installing dependencies ‘animation’, ‘BiocParallel’, ‘crosstalk’, ‘data.table’, ‘DT’, ‘igraph’, ‘knitr’, ‘mixtools’, ‘MSnbase’, ‘plotly’, ‘RColorBrewer’, ‘Rdisop’, ‘rmarkdown’, ‘shiny’, ‘testthat’, ‘xcms’ also installing the dependencies ‘BiocBaseUtils’, ‘sys’, ‘formatR’, ‘colorspace’, ‘matrixStats’, ‘XVector’, ‘UCSC.utils’, ‘GenomeInfoDbData’, ‘abind’, ‘SparseArray’, ‘MultiAssayExperiment’, ‘AnnotationFilter’, ‘reshape2’, ‘statmod’, ‘askpass’, ‘stringi’, ‘utf8’, ‘rappdirs’, ‘lambda.r’, ‘futile.options’, ‘curl’, ‘farver’, ‘labeling’, ‘munsell’, ‘fs’, ‘pkgbuild’, ‘rprojroot’, ‘diffobj’, ‘ncdf4’, ‘Rhdf5lib’, ‘MatrixGenerics’, ‘GenomicRanges’, ‘GenomeInfoDb’, ‘S4Arrays’, ‘DelayedArray’, ‘clue’, ‘QFeatures’, ‘DBI’, ‘hms’, ‘prettyunits’, ‘limma’, ‘affyio’, ‘BiocManager’, ‘preprocessCore’, ‘zlibbioc’, ‘XML’, ‘doParallel’, ‘foreach’, ‘iterators’, ‘gtable’, ‘isoband’, ‘openssl’, ‘stringr’, ‘tidyselect’, ‘generics’, ‘pillar’, ‘fansi’, ‘memoise’, ‘sass’, ‘Rcpp’, ‘futile.logger’, ‘snow’, ‘BH’, ‘cpp11’, ‘magick’, ‘kernlab’, ‘scales’, ‘segmented’, ‘cli’, ‘lifecycle’, ‘magrittr’, ‘pkgconfig’, ‘rlang’, ‘vctrs’, ‘evaluate’, ‘highr’, ‘xfun’, ‘yaml’, ‘brio’, ‘callr’, ‘desc’, ‘digest’, ‘jsonlite’, ‘pkgload’, ‘praise’, ‘processx’, ‘ps’, ‘R6’, ‘waldo’, ‘withr’, ‘mzR’, ‘Biobase’, ‘BiocGenerics’, ‘ProtGenerics’, ‘MassSpecWavelet’, ‘S4Vectors’, ‘IRanges’, ‘SummarizedExperiment’, ‘MsCoreUtils’, ‘MsFeatures’, ‘MsExperiment’, ‘Spectra’, ‘progress’, ‘MetaboCoreUtils’, ‘PSMatch’, ‘plyr’, ‘vsn’, ‘affy’, ‘impute’, ‘pcaMethods’, ‘MALDIquant’, ‘mzID’, ‘ggplot2’, ‘httr’, ‘viridisLite’, ‘base64enc’, ‘htmltools’, ‘htmlwidgets’, ‘tidyr’, ‘dplyr’, ‘tibble’, ‘lazyeval’, ‘purrr’, ‘promises’, ‘httpuv’, ‘mime’, ‘xtable’, ‘fontawesome’, ‘sourcetools’, ‘later’, ‘crayon’, ‘fastmap’, ‘commonmark’, ‘glue’, ‘bslib’, ‘cachem’, ‘jquerylib’, ‘tinytex’ begin installing package ‘BiocBaseUtils’ begin installing package ‘sys’ begin installing package ‘formatR’ begin installing package ‘colorspace’ begin installing package ‘matrixStats’ begin installing package ‘GenomeInfoDbData’ begin installing package ‘abind’ begin installing package ‘statmod’ begin installing package ‘stringi’ begin installing package ‘utf8’ begin installing package ‘rappdirs’ begin installing package ‘futile.options’ begin installing package ‘curl’ begin installing package ‘farver’ begin installing package ‘labeling’ begin installing package ‘fs’ begin installing package ‘rprojroot’ begin installing package ‘ncdf4’ begin installing package ‘Rhdf5lib’ begin installing package ‘DBI’ begin installing package ‘clue’ begin installing package ‘prettyunits’ begin installing package ‘BiocManager’ begin installing package ‘preprocessCore’ begin installing package ‘XML’ begin installing package ‘zlibbioc’ begin installing package ‘iterators’ begin installing package ‘isoband’ * installing *source* package ‘futile.options’ ... ** package ‘futile.options’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (futile.options) begin installing package ‘generics’ * installing *source* package ‘BiocBaseUtils’ ... ** package ‘BiocBaseUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocBaseUtils) begin installing package ‘fansi’ * installing *source* package ‘rappdirs’ ... ** package ‘rappdirs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLLLhQ7/R.INSTALL27496a53a91fe/rappdirs/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c win-path.c -o win-path.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o rappdirs.so init.o win-path.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLLLhQ7/R.INSTALL27496a53a91fe/rappdirs/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-rappdirs/00new/rappdirs/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rappdirs) begin installing package ‘Rcpp’ * installing *source* package ‘zlibbioc’ ... ** package ‘zlibbioc’ successfully unpacked and MD5 sums checked ** using staged installation configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpbYm89e/R.INSTALL274995629b4ef0/zlibbioc/src' mkdir -p "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-zlibbioc/00new/zlibbioc/include" clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_zlibbioc.c -o R_init_zlibbioc.o R_init_zlibbioc.c:1:20: warning: ISO C requires a translation unit to contain at least one declaration [-Wempty-translation-unit] 1 | /* do not remove */ | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o zlibbioc.so R_init_zlibbioc.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpbYm89e/R.INSTALL274995629b4ef0/zlibbioc/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-zlibbioc/00new/zlibbioc/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in fun(libname, pkgname) : Package 'zlibbioc' is deprecated and will be removed from Bioconductor version 3.22 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning in fun(libname, pkgname) : Package 'zlibbioc' is deprecated and will be removed from Bioconductor version 3.22 ** testing if installed package keeps a record of temporary installation path * DONE (zlibbioc) begin installing package ‘snow’ * installing *source* package ‘sys’ ... ** package ‘sys’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpO8h4oR/R.INSTALL2749347e18fe5d/sys/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c exec.c -o exec.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o sys.so exec.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpO8h4oR/R.INSTALL2749347e18fe5d/sys/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-sys/00new/sys/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sys) begin installing package ‘BH’ * installing *source* package ‘prettyunits’ ... ** package ‘prettyunits’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prettyunits) begin installing package ‘cpp11’ * installing *source* package ‘GenomeInfoDbData’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomeInfoDbData) begin installing package ‘kernlab’ * installing *source* package ‘rprojroot’ ... ** package ‘rprojroot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rprojroot) begin installing package ‘segmented’ * installing *source* package ‘iterators’ ... ** package ‘iterators’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iterators) begin installing package ‘cli’ * installing *source* package ‘labeling’ ... ** package ‘labeling’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (labeling) begin installing package ‘magrittr’ * installing *source* package ‘abind’ ... ** package ‘abind’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (abind) begin installing package ‘pkgconfig’ * installing *source* package ‘formatR’ ... ** package ‘formatR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (formatR) begin installing package ‘rlang’ * installing *source* package ‘BiocManager’ ... ** package ‘BiocManager’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocManager) begin installing package ‘evaluate’ * installing *source* package ‘generics’ ... ** package ‘generics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (generics) begin installing package ‘xfun’ * installing *source* package ‘pkgconfig’ ... ** package ‘pkgconfig’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgconfig) begin installing package ‘yaml’ * installing *source* package ‘utf8’ ... ** package ‘utf8’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGVjRzk/R.INSTALL27495c4523231f/utf8/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c as_utf8.c -o as_utf8.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c bytes.c -o bytes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c context.c -o context.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c render.c -o render.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c render_table.c -o render_table.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c string.c -o string.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c text.c -o text.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_encode.c -o utf8_encode.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_format.c -o utf8_format.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_normalize.c -o utf8_normalize.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_valid.c -o utf8_valid.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8_width.c -o utf8_width.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c util.c -o util.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/array.c -o utf8lite/src/array.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/char.c -o utf8lite/src/char.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/encode.c -o utf8lite/src/encode.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/error.c -o utf8lite/src/error.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/escape.c -o utf8lite/src/escape.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/graph.c -o utf8lite/src/graph.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/render.c -o utf8lite/src/render.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/text.c -o utf8lite/src/text.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Iutf8lite/src -fpic -g -O3 -Wall -pedantic -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGVjRzk/R.INSTALL27495c4523231f/utf8/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-utf8/00new/utf8/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (utf8) begin installing package ‘brio’ * installing *source* package ‘magrittr’ ... ** package ‘magrittr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpA53V1T/R.INSTALL275a6d82eb624/magrittr/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pipe.c -o pipe.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o magrittr.so pipe.o utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpA53V1T/R.INSTALL275a6d82eb624/magrittr/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-magrittr/00new/magrittr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (magrittr) begin installing package ‘digest’ * installing *source* package ‘cpp11’ ... ** package ‘cpp11’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cpp11) begin installing package ‘jsonlite’ * installing *source* package ‘curl’ ... ** package ‘curl’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 Using PKG_LIBS=-lcurl Found recent recent version of libcurl ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTPCzh8/R.INSTALL2749712b325ab4/curl/src' rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o findport.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o options.o reflist.o split.o ssl.o typechecking.o urlparser.o utils.o version.o winidn.o writer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c callbacks.c -o callbacks.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c curl.c -o curl.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c download.c -o download.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c escape.c -o escape.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c fetch.c -o fetch.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c findport.c -o findport.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c form.c -o form.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c getdate.c -o getdate.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c handle.c -o handle.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ieproxy.c -o ieproxy.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c interrupt.c -o interrupt.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c multi.c -o multi.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c nslookup.c -o nslookup.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c options.c -o options.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c reflist.c -o reflist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c split.c -o split.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ssl.c -o ssl.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c typechecking.c -o typechecking.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c urlparser.c -o urlparser.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c version.c -o version.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c winidn.c -o winidn.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c writer.c -o writer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o curl.so callbacks.o curl.o download.o escape.o fetch.o findport.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o options.o reflist.o split.o ssl.o typechecking.o urlparser.o utils.o version.o winidn.o writer.o -lcurl -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTPCzh8/R.INSTALL2749712b325ab4/curl/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-curl/00new/curl/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (curl) begin installing package ‘praise’ * installing *source* package ‘snow’ ... ** package ‘snow’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (snow) begin installing package ‘ps’ * installing *source* package ‘evaluate’ ... ** package ‘evaluate’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (evaluate) begin installing package ‘R6’ * installing *source* package ‘statmod’ ... ** package ‘statmod’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ using Fortran compiler: ‘Debian flang-new version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMpFLsp/R.INSTALL2749614b3e5e57/statmod/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c expectedDeviance.c -o expectedDeviance.o flang-new-19 -fpic -g -O2 -c gaussq2.f -o gaussq2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o statmod.so expectedDeviance.o gaussq2.o init.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMpFLsp/R.INSTALL2749614b3e5e57/statmod/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-statmod/00new/statmod/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (statmod) begin installing package ‘withr’ * installing *source* package ‘praise’ ... ** package ‘praise’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (praise) begin installing package ‘BiocGenerics’ * installing *source* package ‘brio’ ... ** package ‘brio’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEojDZs/R.INSTALL2762226b604bc9/brio/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c brio.c -o brio.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c file_line_endings.c -o file_line_endings.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c read_file.c -o read_file.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c read_file_raw.c -o read_file_raw.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c read_lines.c -o read_lines.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write_file.c -o write_file.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write_file_raw.c -o write_file_raw.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write_lines.c -o write_lines.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_file_raw.o write_lines.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEojDZs/R.INSTALL2762226b604bc9/brio/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-brio/00new/brio/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brio) begin installing package ‘ProtGenerics’ * installing *source* package ‘isoband’ ... ** package ‘isoband’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1)’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8n4Df8/R.INSTALL2749971619f51c/isoband/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c clip-lines.cpp -o clip-lines.o clip-lines.cpp:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c init.cpp -o init.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c isoband.cpp -o isoband.o isoband.cpp:6:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 6 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c polygon.cpp -o polygon.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c separate-polygons.cpp -o separate-polygons.o separate-polygons.cpp:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c test-clip-lines.cpp -o test-clip-lines.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c test-runner.cpp -o test-runner.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c test-separate-polygons.cpp -o test-separate-polygons.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o isoband.so clip-lines.o init.o isoband.o polygon.o separate-polygons.o test-clip-lines.o test-runner.o test-separate-polygons.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8n4Df8/R.INSTALL2749971619f51c/isoband/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-isoband/00new/isoband/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (isoband) begin installing package ‘MassSpecWavelet’ * installing *source* package ‘ncdf4’ ... ** package ‘ncdf4’ successfully unpacked and MD5 sums checked ** using staged installation configure.ac: starting checking for nc-config... yes Using nc-config: nc-config Output of nc-config --all: This netCDF 4.9.2 has been built with the following features: --cc -> /usr/bin/cc --cflags -> -I/usr/include -I/usr/include/hdf5/serial --libs -> -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf --static -> -lhdf5_hl -lhdf5 -lcrypto -lcurl -lpthread -lsz -lz -ldl -lm -lzstd -lxml2 --has-dap -> yes --has-dap2 -> yes --has-dap4 -> yes --has-nc2 -> yes --has-nc4 -> yes --has-hdf5 -> yes --has-hdf4 -> no --has-logging -> no --has-pnetcdf -> no --has-szlib -> no --has-cdf5 -> yes --has-parallel4 -> no --has-parallel -> no --has-nczarr -> yes --has-zstd -> yes --has-benchmarks -> no --has-multifilters -> no --has-stdfilters -> deflate szip zstd bz2 --has-quantize -> no --prefix -> /usr --includedir -> /usr/include --libdir -> /usr/lib/x86_64-linux-gnu --plugindir -> --version -> netCDF 4.9.2 --- netcdf.m4: about to set rpath, here is source string: >-L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf< netcdf.m4: final rpath: -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial Netcdf library version: netCDF 4.9.2 Netcdf library has version 4 interface present: yes Netcdf library was compiled with C compiler: /usr/bin/cc configure: creating ./config.status config.status: creating src/Makevars ********************** Results of ncdf4 package configure ******************* netCDF v4 CPP flags = -I/usr/include -I/usr/include/hdf5/serial netCDF v4 LD flags = -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-O1 netCDF v4 runtime path = -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial netCDF C compiler used = /usr/bin/cc R C compiler used = clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic ****************************************************************************** checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... yes checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to accept ISO C89... none needed checking whether we are using the GNU C compiler... (cached) yes checking whether clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... (cached) yes checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to accept ISO C89... (cached) none needed netcdf cc arg1: /usr/bin/cc R cc arg1: clang-19 R_IS_GCC: 1 R_IS_CLANG: 1 NETCDF_IS_GCC: 1 NETCDF_IS_CLANG: 0 emit_warning: 0 ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8GyQ1v/R.INSTALL2749847e35af14/ncdf4/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include -I/usr/include/hdf5/serial -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ncdf.c -o ncdf.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o ncdf4.so ncdf.o -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-O1 -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8GyQ1v/R.INSTALL2749847e35af14/ncdf4/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-ncdf4/00new/ncdf4/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ncdf4) begin installing package ‘impute’ * installing *source* package ‘fansi’ ... ** package ‘fansi’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXExTjp/R.INSTALL2758235eb054c1/fansi/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c assumptions.c -o assumptions.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c carry.c -o carry.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c has.c -o has.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c nchar.c -o nchar.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c normalize.c -o normalize.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c read.c -o read.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rnchar.c -o rnchar.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c state.c -o state.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c strip.c -o strip.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c substr.c -o substr.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c tabs.c -o tabs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c tohtml.c -o tohtml.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c trimws.c -o trimws.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c unhandled.c -o unhandled.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utf8.c -o utf8.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c wrap.c -o wrap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c write.c -o write.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o fansi.so assumptions.o carry.o has.o init.o nchar.o normalize.o read.o rnchar.o state.o strip.o substr.o tabs.o tohtml.o trimws.o unhandled.o utf8.o utils.o wrap.o write.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXExTjp/R.INSTALL2758235eb054c1/fansi/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-fansi/00new/fansi/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fansi) begin installing package ‘MALDIquant’ * installing *source* package ‘R6’ ... ** package ‘R6’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R6) begin installing package ‘viridisLite’ * installing *source* package ‘DBI’ ... ** package ‘DBI’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DBI) begin installing package ‘base64enc’ * installing *source* package ‘impute’ ... ** package ‘impute’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using Fortran compiler: ‘Debian flang-new version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpp8ovU7/R.INSTALL276b962eb1fb4c/impute/src' flang-new-19 -fpic -g -O2 -c knnimpute.f -o knnimpute.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o impute.so knnimpute.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpp8ovU7/R.INSTALL276b962eb1fb4c/impute/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-impute/00new/impute/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (impute) begin installing package ‘lazyeval’ * installing *source* package ‘preprocessCore’ ... ** package ‘preprocessCore’ successfully unpacked and MD5 sums checked ** using staged installation 'config' variable 'CPP' is defunct checking for gcc... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... yes checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to accept ISO C89... none needed checking how to run the C preprocessor... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -E checking for library containing pthread_create... none required checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking if PTHREAD_STACK_MIN is defined... yes checking if R is using flexiblas... flexiblas not found. preprocessCore threading will not be disabled configure: Enabling threading for preprocessCore configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmCGUe0/R.INSTALL2749917e8e10a0/preprocessCore/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c R_colSummarize.c -o R_colSummarize.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c R_plmd_interfaces.c -o R_plmd_interfaces.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c R_plmr_interfaces.c -o R_plmr_interfaces.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c R_rlm_interfaces.c -o R_rlm_interfaces.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c R_subColSummarize.c -o R_subColSummarize.o R_subColSummarize.c:109:21: warning: unused variable 'buffer' [-Wunused-variable] 109 | double *results, *buffer; | ^~~~~~ R_subColSummarize.c:111:8: warning: unused variable 'cur_rows' [-Wunused-variable] 111 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:115:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 115 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:117:9: warning: unused variable 'j' [-Wunused-variable] 117 | int i,j; | ^ R_subColSummarize.c:282:21: warning: unused variable 'buffer' [-Wunused-variable] 282 | double *results, *buffer; | ^~~~~~ R_subColSummarize.c:284:8: warning: unused variable 'cur_rows' [-Wunused-variable] 284 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:288:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 288 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:290:9: warning: unused variable 'j' [-Wunused-variable] 290 | int i,j; | ^ R_subColSummarize.c:458:21: warning: unused variable 'buffer' [-Wunused-variable] 458 | double *results, *buffer; | ^~~~~~ R_subColSummarize.c:460:8: warning: unused variable 'cur_rows' [-Wunused-variable] 460 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:464:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 464 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:466:9: warning: unused variable 'j' [-Wunused-variable] 466 | int i,j; | ^ R_subColSummarize.c:635:21: warning: unused variable 'buffer' [-Wunused-variable] 635 | double *results, *buffer; | ^~~~~~ R_subColSummarize.c:637:8: warning: unused variable 'cur_rows' [-Wunused-variable] 637 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:641:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 641 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:643:9: warning: unused variable 'j' [-Wunused-variable] 643 | int i,j; | ^ R_subColSummarize.c:811:21: warning: unused variable 'buffer' [-Wunused-variable] 811 | double *results, *buffer; | ^~~~~~ R_subColSummarize.c:813:8: warning: unused variable 'cur_rows' [-Wunused-variable] 813 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:817:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 817 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:819:9: warning: unused variable 'j' [-Wunused-variable] 819 | int i,j; | ^ R_subColSummarize.c:988:21: warning: unused variable 'buffer' [-Wunused-variable] 988 | double *results, *buffer; | ^~~~~~ R_subColSummarize.c:990:8: warning: unused variable 'cur_rows' [-Wunused-variable] 990 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:994:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 994 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:996:9: warning: unused variable 'j' [-Wunused-variable] 996 | int i,j; | ^ R_subColSummarize.c:1163:21: warning: unused variable 'buffer' [-Wunused-variable] 1163 | double *results, *buffer; | ^~~~~~ R_subColSummarize.c:1165:8: warning: unused variable 'cur_rows' [-Wunused-variable] 1165 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:1169:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 1169 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:1171:9: warning: unused variable 'j' [-Wunused-variable] 1171 | int i,j; | ^ R_subColSummarize.c:1337:21: warning: unused variable 'buffer' [-Wunused-variable] 1337 | double *results, *buffer; | ^~~~~~ R_subColSummarize.c:1339:8: warning: unused variable 'cur_rows' [-Wunused-variable] 1339 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:1343:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 1343 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:1345:9: warning: unused variable 'j' [-Wunused-variable] 1345 | int i,j; | ^ R_subColSummarize.c:1516:21: warning: variable 'buffer' set but not used [-Wunused-but-set-variable] 1516 | double *results, *buffer, *buffer2; | ^ R_subColSummarize.c:1516:30: warning: variable 'buffer2' set but not used [-Wunused-but-set-variable] 1516 | double *results, *buffer, *buffer2; | ^ R_subColSummarize.c:1518:8: warning: unused variable 'cur_rows' [-Wunused-variable] 1518 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:1522:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 1522 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:1524:9: warning: unused variable 'j' [-Wunused-variable] 1524 | int i,j; | ^ R_subColSummarize.c:1696:21: warning: unused variable 'buffer' [-Wunused-variable] 1696 | double *results, *buffer, *buffer2; | ^~~~~~ R_subColSummarize.c:1696:30: warning: unused variable 'buffer2' [-Wunused-variable] 1696 | double *results, *buffer, *buffer2; | ^~~~~~~ R_subColSummarize.c:1698:8: warning: unused variable 'cur_rows' [-Wunused-variable] 1698 | int *cur_rows; | ^~~~~~~~ R_subColSummarize.c:1702:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 1702 | int ncur_rows; | ^~~~~~~~~ R_subColSummarize.c:1704:9: warning: unused variable 'j' [-Wunused-variable] 1704 | int i,j; | ^ R_subColSummarize.c:1660:14: warning: unused function 'subColSummarize_medianpolish_group' [-Wunused-function] 1660 | static void *subColSummarize_medianpolish_group(void *data){ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c R_subrcModel_interfaces.c -o R_subrcModel_interfaces.o R_subrcModel_interfaces.c:75:11: warning: unused variable 'buffer' [-Wunused-variable] 75 | double *buffer, *buffer2; | ^~~~~~ R_subrcModel_interfaces.c:75:20: warning: unused variable 'buffer2' [-Wunused-variable] 75 | double *buffer, *buffer2; | ^~~~~~~ R_subrcModel_interfaces.c:90:11: warning: unused variable 'weights' [-Wunused-variable] 90 | double *weights; | ^~~~~~~ R_subrcModel_interfaces.c:91:11: warning: unused variable 'se' [-Wunused-variable] 91 | double *se; | ^~ R_subrcModel_interfaces.c:165:11: warning: unused variable 'results' [-Wunused-variable] 165 | double *results, *buffer, *buffer2; | ^~~~~~~ R_subrcModel_interfaces.c:165:21: warning: unused variable 'buffer' [-Wunused-variable] 165 | double *results, *buffer, *buffer2; | ^~~~~~ R_subrcModel_interfaces.c:165:30: warning: unused variable 'buffer2' [-Wunused-variable] 165 | double *results, *buffer, *buffer2; | ^~~~~~~ R_subrcModel_interfaces.c:167:8: warning: unused variable 'cur_rows' [-Wunused-variable] 167 | int *cur_rows; | ^~~~~~~~ R_subrcModel_interfaces.c:171:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 171 | int ncur_rows; | ^~~~~~~~~ R_subrcModel_interfaces.c:173:9: warning: unused variable 'j' [-Wunused-variable] 173 | int i,j; | ^ R_subrcModel_interfaces.c:377:11: warning: unused variable 'buffer' [-Wunused-variable] 377 | double *buffer, *buffer2; | ^~~~~~ R_subrcModel_interfaces.c:377:20: warning: unused variable 'buffer2' [-Wunused-variable] 377 | double *buffer, *buffer2; | ^~~~~~~ R_subrcModel_interfaces.c:398:10: warning: unused variable 'scale' [-Wunused-variable] 398 | double scale=-1.0; | ^~~~~ R_subrcModel_interfaces.c:485:11: warning: unused variable 'results' [-Wunused-variable] 485 | double *results, *buffer, *buffer2; | ^~~~~~~ R_subrcModel_interfaces.c:485:21: warning: unused variable 'buffer' [-Wunused-variable] 485 | double *results, *buffer, *buffer2; | ^~~~~~ R_subrcModel_interfaces.c:485:30: warning: unused variable 'buffer2' [-Wunused-variable] 485 | double *results, *buffer, *buffer2; | ^~~~~~~ R_subrcModel_interfaces.c:487:8: warning: unused variable 'cur_rows' [-Wunused-variable] 487 | int *cur_rows; | ^~~~~~~~ R_subrcModel_interfaces.c:491:7: warning: unused variable 'ncur_rows' [-Wunused-variable] 491 | int ncur_rows; | ^~~~~~~~~ R_subrcModel_interfaces.c:493:9: warning: unused variable 'j' [-Wunused-variable] 493 | int i,j; | ^ 19 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c avg.c -o avg.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c avg_log.c -o avg_log.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c biweight.c -o biweight.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c init_package.c -o init_package.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c lm.c -o lm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c log_avg.c -o log_avg.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c log_median.c -o log_median.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c matrix_functions.c -o matrix_functions.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c median.c -o median.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c median_log.c -o median_log.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c medianpolish.c -o medianpolish.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c plmd.c -o plmd.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c plmr.c -o plmr.o plmr.c:82:13: warning: unused function 'XTWY_R' [-Wunused-function] 82 | static void XTWY_R(int *rows, int *cols, double *out_weights, double *y,double *xtwy){ | ^~~~~~ plmr.c:152:13: warning: unused function 'XTWX_R' [-Wunused-function] 152 | static void XTWX_R(int *rows, int *cols, double *out_weights, double *xtwx){ | ^~~~~~ plmr.c:279:13: warning: unused function 'XTWX_R_inv' [-Wunused-function] 279 | static void XTWX_R_inv(int *rows, int *cols, double *xtwx){ | ^~~~~~~~~~ 3 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c psi_fns.c -o psi_fns.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c qnorm.c -o qnorm.o qnorm.c:596:9: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 595 | error("ERROR; return code from pthread_join(thread #%d) is %d, exit status for thread was %d\n", | ~~ | %zu 596 | i, returnCode, *((int *) status)); | ^ qnorm.c:617:9: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 616 | error("ERROR; return code from pthread_join(thread #%d) is %d, exit status for thread was %d\n", | ~~ | %zu 617 | i, returnCode, *((int *) status)); | ^ qnorm.c:2005:9: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 2004 | error("ERROR; return code from pthread_join(thread #%d) is %d, exit status for thread was %d\n", | ~~ | %zu 2005 | i, returnCode, *((int *) status)); | ^ qnorm.c:1905:12: warning: unused variable 'j' [-Wunused-variable] 1905 | size_t i,j,row_mean_ind; | ^ qnorm.c:1910:7: warning: unused variable 'non_na' [-Wunused-variable] 1910 | int non_na; | ^~~~~~ qnorm.c:2102:14: warning: variable 'target_rows' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 2102 | } else if (isMatrix(target)){ | ^~~~~~~~~~~~~~~~ /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:970:19: note: expanded from macro 'isMatrix' 970 | #define isMatrix Rf_isMatrix | ^ qnorm.c:2115:55: note: uninitialized use occurs here 2115 | qnorm_c_using_target_l(Xptr, rows, cols ,targetptr, target_rows); | ^~~~~~~~~~~ qnorm.c:2102:10: note: remove the 'if' if its condition is always true 2102 | } else if (isMatrix(target)){ | ^~~~~~~~~~~~~~~~~~~~~ qnorm.c:2083:21: note: initialize the variable 'target_rows' to silence this warning 2083 | size_t target_rows, target_cols; | ^ | = 0 qnorm.c:2605:9: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 2604 | error("ERROR; return code from pthread_join(thread #%d) is %d, exit status for thread was %d\n", | ~~ | %zu 2605 | i, returnCode, *((int *) status)); | ^ qnorm.c:2504:12: warning: unused variable 'j' [-Wunused-variable] 2504 | size_t i,j,row_mean_ind; | ^ qnorm.c:2509:7: warning: unused variable 'non_na' [-Wunused-variable] 2509 | int non_na; | ^~~~~~ qnorm.c:2725:14: warning: variable 'ind' set but not used [-Wunused-but-set-variable] 2725 | size_t i,j,ind,target_ind; | ^ qnorm.c:2823:11: warning: unused variable 'sample_percentiles' [-Wunused-variable] 2823 | double *sample_percentiles; | ^~~~~~~~~~~~~~~~~~ qnorm.c:2824:11: warning: unused variable 'datvec' [-Wunused-variable] 2824 | double *datvec; | ^~~~~~ qnorm.c:2957:12: warning: unused variable 'j' [-Wunused-variable] 2957 | size_t i,j,ind,target_ind; | ^ qnorm.c:2957:14: warning: unused variable 'ind' [-Wunused-variable] 2957 | size_t i,j,ind,target_ind; | ^~~ qnorm.c:2957:18: warning: unused variable 'target_ind' [-Wunused-variable] 2957 | size_t i,j,ind,target_ind; | ^~~~~~~~~~ qnorm.c:2959:14: warning: unused variable 'dimat' [-Wunused-variable] 2959 | dataitem **dimat; | ^~~~~ qnorm.c:2961:11: warning: unused variable 'row_mean' [-Wunused-variable] 2961 | double *row_mean = target; | ^~~~~~~~ qnorm.c:2963:11: warning: unused variable 'ranks' [-Wunused-variable] 2963 | double *ranks = (double *)R_Calloc((rows),double); | ^~~~~ qnorm.c:2964:10: warning: unused variable 'samplepercentile' [-Wunused-variable] 2964 | double samplepercentile; | ^~~~~~~~~~~~~~~~ qnorm.c:2965:10: warning: unused variable 'target_ind_double' [-Wunused-variable] 2965 | double target_ind_double,target_ind_double_floor; | ^~~~~~~~~~~~~~~~~ qnorm.c:2965:28: warning: unused variable 'target_ind_double_floor' [-Wunused-variable] 2965 | double target_ind_double,target_ind_double_floor; | ^~~~~~~~~~~~~~~~~~~~~~~ qnorm.c:2967:7: warning: unused variable 'targetnon_na' [-Wunused-variable] 2967 | int targetnon_na = targetrows; | ^~~~~~~~~~~~ qnorm.c:2968:7: warning: unused variable 'non_na' [-Wunused-variable] 2968 | int non_na = 0; | ^~~~~~ qnorm.c:2972:11: warning: unused variable 'sample_percentiles' [-Wunused-variable] 2972 | double *sample_percentiles; | ^~~~~~~~~~~~~~~~~~ qnorm.c:2973:11: warning: unused variable 'datvec' [-Wunused-variable] 2973 | double *datvec; | ^~~~~~ qnorm.c:3228:14: warning: variable 'target_rows' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 3228 | } else if (isMatrix(target)){ | ^~~~~~~~~~~~~~~~ /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:970:19: note: expanded from macro 'isMatrix' 970 | #define isMatrix Rf_isMatrix | ^ qnorm.c:3242:77: note: uninitialized use occurs here 3242 | qnorm_c_using_target_via_subset_l(Xptr, rows, cols, subsetptr, targetptr, target_rows); | ^~~~~~~~~~~ qnorm.c:3228:10: note: remove the 'if' if its condition is always true 3228 | } else if (isMatrix(target)){ | ^~~~~~~~~~~~~~~~~~~~~ qnorm.c:3209:21: note: initialize the variable 'target_rows' to silence this warning 3209 | size_t target_rows, target_cols; | ^ | = 0 26 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c rlm.c -o rlm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c rlm_anova.c -o rlm_anova.o rlm_anova.c:1235:10: warning: unused variable 'endprobe' [-Wunused-variable] 1235 | double endprobe; | ^~~~~~~~ rlm_anova.c:1414:10: warning: unused variable 'k1' [-Wunused-variable] 1414 | double k1 = psi_k; /* was 1.345; */ | ^~ rlm_anova.c:1415:10: warning: unused variable 'sumpsi2' [-Wunused-variable] 1415 | double sumpsi2=0.0; /* sum of psi(r_i)^2 */ | ^~~~~~~ rlm_anova.c:1417:10: warning: unused variable 'sumderivpsi' [-Wunused-variable] 1417 | double sumderivpsi=0.0; /* sum of psi'(r_i) */ | ^~~~~~~~~~~ rlm_anova.c:1418:10: warning: unused variable 'Kappa' [-Wunused-variable] 1418 | double Kappa=0.0; /* A correction factor */ | ^~~~~ rlm_anova.c:1419:10: warning: unused variable 'scale' [-Wunused-variable] 1419 | double scale=0.0; | ^~~~~ rlm_anova.c:1426:10: warning: unused variable 'vs' [-Wunused-variable] 1426 | double vs=0.0,m,varderivpsi=0.0; | ^~ rlm_anova.c:1426:17: warning: unused variable 'm' [-Wunused-variable] 1426 | double vs=0.0,m,varderivpsi=0.0; | ^ rlm_anova.c:1426:19: warning: unused variable 'varderivpsi' [-Wunused-variable] 1426 | double vs=0.0,m,varderivpsi=0.0; | ^~~~~~~~~~~ rlm_anova.c:1505:10: warning: unused variable 'endprobe' [-Wunused-variable] 1505 | double endprobe; | ^~~~~~~~ 10 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c rlm_se.c -o rlm_se.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c rma_background4.c -o rma_background4.o rma_background4.c:354:10: warning: unused variable 'j' [-Wunused-variable] 354 | size_t j; | ^ rma_background4.c:355:10: warning: unused variable 'param' [-Wunused-variable] 355 | double param[3]; | ^~~~~ 2 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c rma_common.c -o rma_common.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_STDLIB_H=1 -DUSE_PTHREADS=1 -fpic -g -O3 -Wall -pedantic -c weightedkerneldensity.c -o weightedkerneldensity.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o preprocessCore.so R_colSummarize.o R_plmd_interfaces.o R_plmr_interfaces.o R_rlm_interfaces.o R_subColSummarize.o R_subrcModel_interfaces.o avg.o avg_log.o biweight.o init_package.o lm.o log_avg.o log_median.o matrix_functions.o median.o median_log.o medianpolish.o plmd.o plmr.o psi_fns.o qnorm.o rlm.o rlm_anova.o rlm_se.o rma_background4.o rma_common.o weightedkerneldensity.o -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmCGUe0/R.INSTALL2749917e8e10a0/preprocessCore/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-preprocessCore/00new/preprocessCore/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (preprocessCore) begin installing package ‘mime’ * installing *source* package ‘withr’ ... ** package ‘withr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (withr) begin installing package ‘xtable’ * installing *source* package ‘clue’ ... ** package ‘clue’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpluy4bs/R.INSTALL274988164f8c8e/clue/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c assignment.c -o assignment.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c clue.c -o clue.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lsap.c -o lsap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c trees.c -o trees.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o clue.so assignment.o clue.o init.o lsap.o trees.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpluy4bs/R.INSTALL274988164f8c8e/clue/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-clue/00new/clue/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clue) begin installing package ‘sourcetools’ * installing *source* package ‘viridisLite’ ... ** package ‘viridisLite’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (viridisLite) begin installing package ‘crayon’ * installing *source* package ‘ProtGenerics’ ... ** package ‘ProtGenerics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘smooth’ in package ‘ProtGenerics’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ProtGenerics) begin installing package ‘fastmap’ * installing *source* package ‘base64enc’ ... ** package ‘base64enc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpItk0iu/R.INSTALL2774922cd49b2/base64enc/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c uriencode.c -o uriencode.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utf8.c -o utf8.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o base64enc.so base64.o uriencode.o utf8.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpItk0iu/R.INSTALL2774922cd49b2/base64enc/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-base64enc/00new/base64enc/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (base64enc) begin installing package ‘commonmark’ * installing *source* package ‘MassSpecWavelet’ ... ** package ‘MassSpecWavelet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZKu82k/R.INSTALL276b505b9c8c6d/MassSpecWavelet/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c find_local_maximum.c -o find_local_maximum.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o MassSpecWavelet.so find_local_maximum.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZKu82k/R.INSTALL276b505b9c8c6d/MassSpecWavelet/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-MassSpecWavelet/00new/MassSpecWavelet/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MassSpecWavelet) begin installing package ‘glue’ * installing *source* package ‘jsonlite’ ... ** package ‘jsonlite’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFF6Ufk/R.INSTALL2762982552e31a/jsonlite/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c collapse_array.c -o collapse_array.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c collapse_object.c -o collapse_object.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c collapse_pretty.c -o collapse_pretty.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c escape_chars.c -o escape_chars.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c integer64_to_na.c -o integer64_to_na.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c is_datelist.c -o is_datelist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c is_recordlist.c -o is_recordlist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c is_scalarlist.c -o is_scalarlist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c modp_numtoa.c -o modp_numtoa.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c null_to_na.c -o null_to_na.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c num_to_char.c -o num_to_char.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c parse.c -o parse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c prettify.c -o prettify.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c push_parser.c -o push_parser.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c r-base64.c -o r-base64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c register.c -o register.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c row_collapse.c -o row_collapse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c transpose_list.c -o transpose_list.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c validate.c -o validate.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl.c -o yajl/yajl.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_buf.c -o yajl/yajl_buf.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_encode.c -o yajl/yajl_encode.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_gen.c -o yajl/yajl_gen.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_lex.c -o yajl/yajl_lex.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_parser.c -o yajl/yajl_parser.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Iyajl/api -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c yajl/yajl_tree.c -o yajl/yajl_tree.o ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFF6Ufk/R.INSTALL2762982552e31a/jsonlite/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-jsonlite/00new/jsonlite/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘asJSON’ with signature ‘"AsIs"’: no definition for class “AsIs” in method for ‘asJSON’ with signature ‘"ITime"’: no definition for class “ITime” in method for ‘asJSON’ with signature ‘"hms"’: no definition for class “hms” in method for ‘asJSON’ with signature ‘"json"’: no definition for class “json” in method for ‘asJSON’ with signature ‘"integer64"’: no definition for class “integer64” in method for ‘asJSON’ with signature ‘"pairlist"’: no definition for class “pairlist” in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” in method for ‘asJSON’ with signature ‘"scalar"’: no definition for class “scalar” in method for ‘asJSON’ with signature ‘"sf"’: no definition for class “sf” in method for ‘asJSON’ with signature ‘"sfc"’: no definition for class “sfc” in method for ‘asJSON’ with signature ‘"vctrs_vctr"’: no definition for class “vctrs_vctr” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jsonlite) begin installing package ‘RColorBrewer’ * installing *source* package ‘mime’ ... ** package ‘mime’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiNXjLz/R.INSTALL27763c4f586bec/mime/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rawmatch.c -o rawmatch.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o mime.so init.o rawmatch.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiNXjLz/R.INSTALL27763c4f586bec/mime/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-mime/00new/mime/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mime) begin installing package ‘data.table’ * installing *source* package ‘ps’ ... ** package ‘ps’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQ4Iayd/R.INSTALL2763606173dfb0/ps/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -Wl,-O1 -Wall px.c -o px clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api-common.c -o api-common.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c common.c -o common.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c extra.c -o extra.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dummy.c -o dummy.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c error-codes.c -o error-codes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c posix.c -o posix.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api-posix.c -o api-posix.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c linux.c -o linux.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api-linux.c -o api-linux.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o cleancall.o posix.o api-posix.o linux.o api-linux.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQ4Iayd/R.INSTALL2763606173dfb0/ps/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-ps/00new/ps ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ps) begin installing package ‘askpass’ * installing *source* package ‘lazyeval’ ... ** package ‘lazyeval’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdKCv5i/R.INSTALL2775b34902a517/lazyeval/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c expr.c -o expr.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c interp.c -o interp.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lazy.c -o lazy.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c name.c -o name.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdKCv5i/R.INSTALL2775b34902a517/lazyeval/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-lazyeval/00new/lazyeval/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lazyeval) begin installing package ‘lambda.r’ * installing *source* package ‘sourcetools’ ... ** package ‘sourcetools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmph5nIg2/R.INSTALL2776d35217f519/sourcetools/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c Reader.cpp -o Reader.o In file included from Reader.cpp:3: In file included from ../inst/include/sourcetools/read/read.h:7: In file included from ../inst/include/sourcetools/read/MemoryMappedReader.h:10: ../inst/include/sourcetools/r/RHeaders.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c Tokenizer.cpp -o Tokenizer.o In file included from Tokenizer.cpp:1: In file included from ../inst/include/sourcetools.h:9: In file included from ../inst/include/sourcetools/read/read.h:7: In file included from ../inst/include/sourcetools/read/MemoryMappedReader.h:10: ../inst/include/sourcetools/r/RHeaders.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sourcetools-init.c -o sourcetools-init.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o sourcetools.so Reader.o Tokenizer.o sourcetools-init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmph5nIg2/R.INSTALL2776d35217f519/sourcetools/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-sourcetools/00new/sourcetools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sourcetools) begin installing package ‘limma’ * installing *source* package ‘colorspace’ ... ** package ‘colorspace’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzZTLKU/R.INSTALL274940411dbc5d/colorspace/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colorspace.c -o colorspace.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o colorspace.so colorspace.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzZTLKU/R.INSTALL274940411dbc5d/colorspace/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-colorspace/00new/colorspace/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (colorspace) begin installing package ‘affyio’ * installing *source* package ‘xtable’ ... ** package ‘xtable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xtable) begin installing package ‘foreach’ * installing *source* package ‘RColorBrewer’ ... ** package ‘RColorBrewer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RColorBrewer) begin installing package ‘processx’ * installing *source* package ‘crayon’ ... ** package ‘crayon’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crayon) begin installing package ‘munsell’ * installing *source* package ‘xfun’ ... ** package ‘xfun’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphO30xb/R.INSTALL2760ce36a9a75d/xfun/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o xfun.so base64.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphO30xb/R.INSTALL2760ce36a9a75d/xfun/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-xfun/00new/xfun/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xfun) begin installing package ‘diffobj’ * installing *source* package ‘BiocGenerics’ ... ** package ‘BiocGenerics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘aperm’ in package ‘BiocGenerics’ Creating a new generic function for ‘append’ in package ‘BiocGenerics’ Creating a new generic function for ‘as.data.frame’ in package ‘BiocGenerics’ Creating a new generic function for ‘cbind’ in package ‘BiocGenerics’ Creating a new generic function for ‘rbind’ in package ‘BiocGenerics’ Creating a new generic function for ‘do.call’ in package ‘BiocGenerics’ Creating a new generic function for ‘duplicated’ in package ‘BiocGenerics’ Creating a new generic function for ‘anyDuplicated’ in package ‘BiocGenerics’ Creating a new generic function for ‘eval’ in package ‘BiocGenerics’ Creating a new generic function for ‘pmax’ in package ‘BiocGenerics’ Creating a new generic function for ‘pmin’ in package ‘BiocGenerics’ Creating a new generic function for ‘pmax.int’ in package ‘BiocGenerics’ Creating a new generic function for ‘pmin.int’ in package ‘BiocGenerics’ Creating a new generic function for ‘Reduce’ in package ‘BiocGenerics’ Creating a new generic function for ‘Filter’ in package ‘BiocGenerics’ Creating a new generic function for ‘Find’ in package ‘BiocGenerics’ Creating a new generic function for ‘Map’ in package ‘BiocGenerics’ Creating a new generic function for ‘Position’ in package ‘BiocGenerics’ Creating a new generic function for ‘get’ in package ‘BiocGenerics’ Creating a new generic function for ‘mget’ in package ‘BiocGenerics’ Creating a new generic function for ‘grep’ in package ‘BiocGenerics’ Creating a new generic function for ‘grepl’ in package ‘BiocGenerics’ Creating a new generic function for ‘is.unsorted’ in package ‘BiocGenerics’ Creating a new generic function for ‘lapply’ in package ‘BiocGenerics’ Creating a new generic function for ‘sapply’ in package ‘BiocGenerics’ Creating a new generic function for ‘mapply’ in package ‘BiocGenerics’ Creating a new generic function for ‘match’ in package ‘BiocGenerics’ Creating a new generic function for ‘order’ in package ‘BiocGenerics’ Creating a new generic function for ‘paste’ in package ‘BiocGenerics’ Creating a new generic function for ‘rank’ in package ‘BiocGenerics’ Creating a new generic function for ‘rownames’ in package ‘BiocGenerics’ Creating a new generic function for ‘colnames’ in package ‘BiocGenerics’ Creating a new generic function for ‘saveRDS’ in package ‘BiocGenerics’ Creating a new generic function for ‘union’ in package ‘BiocGenerics’ Creating a new generic function for ‘intersect’ in package ‘BiocGenerics’ Creating a new generic function for ‘setdiff’ in package ‘BiocGenerics’ Creating a new generic function for ‘table’ in package ‘BiocGenerics’ Creating a new generic function for ‘tapply’ in package ‘BiocGenerics’ Creating a new generic function for ‘unique’ in package ‘BiocGenerics’ Creating a new generic function for ‘unsplit’ in package ‘BiocGenerics’ Creating a new generic function for ‘var’ in package ‘BiocGenerics’ Creating a new generic function for ‘sd’ in package ‘BiocGenerics’ Creating a new generic function for ‘which.min’ in package ‘BiocGenerics’ Creating a new generic function for ‘which.max’ in package ‘BiocGenerics’ Creating a new generic function for ‘IQR’ in package ‘BiocGenerics’ Creating a new generic function for ‘mad’ in package ‘BiocGenerics’ Creating a new generic function for ‘xtabs’ in package ‘BiocGenerics’ Creating a new generic function for ‘basename’ in package ‘BiocGenerics’ Creating a new generic function for ‘dirname’ in package ‘BiocGenerics’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocGenerics) begin installing package ‘highr’ * installing *source* package ‘glue’ ... ** package ‘glue’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpawDWia/R.INSTALL2778a52e54dd84/glue/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c glue.c -o glue.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c trim.c -o trim.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o glue.so glue.o init.o trim.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpawDWia/R.INSTALL2778a52e54dd84/glue/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-glue/00new/glue/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glue) begin installing package ‘Biobase’ * installing *source* package ‘askpass’ ... ** package ‘askpass’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp79aMEK/R.INSTALL277c7c6e625250/askpass/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c askpass.c -o askpass.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o askpass.so askpass.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp79aMEK/R.INSTALL277c7c6e625250/askpass/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-askpass/00new/askpass/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (askpass) begin installing package ‘S4Vectors’ * installing *source* package ‘fastmap’ ... ** package ‘fastmap’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpV8b4mK/R.INSTALL2778251f0ec88e/fastmap/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Ilib/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c fastmap.cpp -o fastmap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Ilib/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o fastmap.so fastmap.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpV8b4mK/R.INSTALL2778251f0ec88e/fastmap/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-fastmap/00new/fastmap/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastmap) begin installing package ‘tinytex’ * installing *source* package ‘MALDIquant’ ... ** package ‘MALDIquant’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHgkrP1/R.INSTALL276c3768c8b26f/MALDIquant/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colMedians.c -o colMedians.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c localMaxima.c -o localMaxima.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lowerConvexHull.c -o lowerConvexHull.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c morphologicalFilters.c -o morphologicalFilters.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c snip.c -o snip.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o MALDIquant.so colMedians.o init.o localMaxima.o lowerConvexHull.o morphologicalFilters.o snip.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHgkrP1/R.INSTALL276c3768c8b26f/MALDIquant/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-MALDIquant/00new/MALDIquant/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘approxfun’ from package ‘stats’ in package ‘MALDIquant’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MALDIquant) begin installing package ‘openssl’ * installing *source* package ‘lambda.r’ ... ** package ‘lambda.r’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lambda.r) begin installing package ‘futile.logger’ * installing *source* package ‘highr’ ... ** package ‘highr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (highr) * installing *source* package ‘foreach’ ... ** package ‘foreach’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (foreach) begin installing package ‘doParallel’ * installing *source* package ‘munsell’ ... ** package ‘munsell’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (munsell) * installing *source* package ‘yaml’ ... ** package ‘yaml’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmppkBY72/R.INSTALL2761ec2cacecc5/yaml/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c api.c -o api.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dumper.c -o dumper.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c emitter.c -o emitter.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c implicit.c -o implicit.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c loader.c -o loader.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c parser.c -o parser.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c r_emit.c -o r_emit.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c r_ext.c -o r_ext.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c r_parse.c -o r_parse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c reader.c -o reader.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c scanner.c -o scanner.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c writer.c -o writer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmppkBY72/R.INSTALL2761ec2cacecc5/yaml/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-yaml/00new/yaml/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (yaml) begin installing package ‘knitr’ * installing *source* package ‘digest’ ... ** package ‘digest’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp243iyK/R.INSTALL2762601a6cbf3e/digest/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c SpookyV2.cpp -o SpookyV2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c aes.c -o aes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c blake3.c -o blake3.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c blake3_dispatch.c -o blake3_dispatch.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c blake3_portable.c -o blake3_portable.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c crc32.c -o crc32.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c crc32c.cpp -o crc32c.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c crc32c_portable.cpp -o crc32c_portable.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c digest.c -o digest.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c digest2int.c -o digest2int.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pmurhash.c -o pmurhash.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c raes.c -o raes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sha1.c -o sha1.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sha2.c -o sha2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sha256.c -o sha256.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c spooky_serialize.cpp -o spooky_serialize.o spooky_serialize.cpp:25:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 25 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c xxhash.c -o xxhash.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o crc32c.o crc32c_portable.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp243iyK/R.INSTALL2762601a6cbf3e/digest/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-digest/00new/digest/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (digest) * installing *source* package ‘tinytex’ ... ** package ‘tinytex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinytex) * installing *source* package ‘futile.logger’ ... ** package ‘futile.logger’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (futile.logger) * installing *source* package ‘doParallel’ ... ** package ‘doParallel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (doParallel) * installing *source* package ‘matrixStats’ ... ** package ‘matrixStats’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgaGHrp/R.INSTALL27493c45e06967/matrixStats/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c 000.init.c -o 000.init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c allocMatrix2.c -o allocMatrix2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c anyMissing.c -o anyMissing.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c binCounts.c -o binCounts.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c binMeans.c -o binMeans.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colCounts.c -o colCounts.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colOrderStats.c -o colOrderStats.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c colRanges.c -o colRanges.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diff2.c -o diff2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c indexByRow.c -o indexByRow.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c logSumExp.c -o logSumExp.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mean2.c -o mean2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c naming.c -o naming.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c productExpSumLog.c -o productExpSumLog.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c psortKM.c -o psortKM.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCounts.c -o rowCounts.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCummaxs.c -o rowCummaxs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCummins.c -o rowCummins.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCumprods.c -o rowCumprods.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowCumsums.c -o rowCumsums.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowDiffs.c -o rowDiffs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowLogSumExp.c -o rowLogSumExp.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowMads.c -o rowMads.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowMeans2.c -o rowMeans2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowMedians.c -o rowMedians.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowOrderStats.c -o rowOrderStats.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowRanges.c -o rowRanges.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowRanksWithTies.c -o rowRanksWithTies.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowSums2.c -o rowSums2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowVars.c -o rowVars.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c signTabulate.c -o signTabulate.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sum2.c -o sum2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c validateIndices.c -o validateIndices.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c weightedMean.c -o weightedMean.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c weightedMedian.c -o weightedMedian.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c x_OP_y.c -o x_OP_y.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o naming.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgaGHrp/R.INSTALL27493c45e06967/matrixStats/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-matrixStats/00new/matrixStats/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (matrixStats) begin installing package ‘MatrixGenerics’ * installing *source* package ‘cli’ ... ** package ‘cli’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0Rrdmj/R.INSTALL2759f266a5eda9/cli/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c ansi.c -o ansi.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c diff.c -o diff.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c errors.c -o errors.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c glue.c -o glue.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c inst.c -o inst.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress-unix.c -o keypress-unix.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress-win.c -o keypress-win.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c keypress.c -o keypress.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c progress-altrep.c -o progress-altrep.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c progress.c -o progress.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c sha1.c -o sha1.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c sha256.c -o sha256.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c thread.c -o thread.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c tty.c -o tty.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c utf8.c -o utf8.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vt.c -o vt.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vtparse.c -o vtparse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c vtparse_table.c -o vtparse_table.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c win-utf8.c -o win-utf8.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -I../inst/include -fpic -g -O3 -Wall -pedantic -c winfiles.c -o winfiles.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o cli.so ansi.o cleancall.o diff.o errors.o glue.o init.o inst.o keypress-unix.o keypress-win.o keypress.o md5.o progress-altrep.o progress.o sha1.o sha256.o thread.o tty.o utf8.o utils.o vt.o vtparse.o vtparse_table.o win-utf8.o winfiles.o -lpthread -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0Rrdmj/R.INSTALL2759f266a5eda9/cli/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-cli/00new/cli/libs ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cli) begin installing package ‘desc’ * installing *source* package ‘commonmark’ ... ** package ‘commonmark’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpW9CUTY/R.INSTALL27785d6b95a44c/commonmark/src' rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions/tasklist.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions.c -o extensions.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c wrapper.c -o wrapper.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/cmark.c -o cmark/cmark.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/node.c -o cmark/node.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/iterator.c -o cmark/iterator.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/blocks.c -o cmark/blocks.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/inlines.c -o cmark/inlines.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/scanners.c -o cmark/scanners.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/utf8.c -o cmark/utf8.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/buffer.c -o cmark/buffer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/references.c -o cmark/references.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/render.c -o cmark/render.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/man.c -o cmark/man.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/xml.c -o cmark/xml.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/html.c -o cmark/html.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/commonmark.c -o cmark/commonmark.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/latex.c -o cmark/latex.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/arena.c -o cmark/arena.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/linked_list.c -o cmark/linked_list.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/plugin.c -o cmark/plugin.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/registry.c -o cmark/registry.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/syntax_extension.c -o cmark/syntax_extension.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/plaintext.c -o cmark/plaintext.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/footnotes.c -o cmark/footnotes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/map.c -o cmark/map.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/autolink.c -o extensions/autolink.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/core-extensions.c -o extensions/core-extensions.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/ext_scanners.c -o extensions/ext_scanners.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/strikethrough.c -o extensions/strikethrough.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/table.c -o extensions/table.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/tagfilter.c -o extensions/tagfilter.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/tasklist.c -o extensions/tasklist.o ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions/tasklist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpW9CUTY/R.INSTALL27785d6b95a44c/commonmark/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-commonmark/00new/commonmark/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (commonmark) * installing *source* package ‘XML’ ... ** package ‘XML’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... yes checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to enable C11 features... none needed checking how to run the C preprocessor... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -E checking for sed... /usr/bin/sed checking for pkg-config... /usr/bin/pkg-config checking for xml2-config... /usr/bin/xml2-config USE_XML2 = yes SED_EXTENDED_ARG: -E Minor 9, Patch 14 for 2.9.14 Located parser file -I/usr/include/libxml2/parser.h Checking for 1.8: -I/usr/include/libxml2 Using libxml2.* checking for gzopen in -lz... yes checking for xmlParseFile in -lxml2... yes checking for xmlHashSize in -lxml2... yes Using built-in xmlHashSize Checking DTD parsing (presence of externalSubset)... checking for xmlHashSize in -lxml2... (cached) yes Found xmlHashSize checking for xmlOutputBufferCreateBuffer in -lxml2... yes have xmlOutputBufferCreateBuffer() checking for xmlDocDumpFormatMemoryEnc in -lxml2... yes checking for libxml/xmlversion.h... yes Expat: FALSE Checking for return type of xmlHashScan element routine. No return value for xmlHashScan xmlNs has a context field Checking for cetype_t enumeration Using recent version of R with cetype_t enumeration type for encoding checking for xmlsec1-config... no nodegc default xml-debug default Version has XML_WITH_ZLIB Version has xmlHasFeature() **************************************** Configuration information: Libxml settings libxml include directory: -I/usr/include/libxml2 libxml library directory: -lxml2 -lz -lxml2 libxml 2: -DLIBXML2=1 Compilation flags: -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 Link flags: -lxml2 -lz -lxml2 **************************************** configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/supports.R config.status: creating inst/scripts/RSXML.csh config.status: creating inst/scripts/RSXML.bsh ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuSevBY/R.INSTALL27498f5d5b95b3/XML/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c DocParse.c -o DocParse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c EventParse.c -o EventParse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ExpatParse.c -o ExpatParse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c HTMLParse.c -o HTMLParse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c NodeGC.c -o NodeGC.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RSDTD.c -o RSDTD.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RUtils.c -o RUtils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rcatalog.c -o Rcatalog.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Utils.c -o Utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XMLEventParse.c -o XMLEventParse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XMLHashTree.c -o XMLHashTree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XMLTree.c -o XMLTree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c fixNS.c -o fixNS.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libxmlFeatures.c -o libxmlFeatures.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c schema.c -o schema.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c xmlsecurity.c -o xmlsecurity.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DLIBXML -I/usr/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c xpath.c -o xpath.o xpath.c:255:15: warning: assigning to 'xmlXPathFunction' (aka 'void (*)(struct _xmlXPathParserContext *, int)') from 'void *' converts between void pointer and function pointer [-Wpedantic] 255 | routine = R_ExternalPtrAddr(el); | ^ ~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o XML.so DocParse.o EventParse.o ExpatParse.o HTMLParse.o NodeGC.o RSDTD.o RUtils.o Rcatalog.o Utils.o XMLEventParse.o XMLHashTree.o XMLTree.o fixNS.o libxmlFeatures.o schema.o xmlsecurity.o xpath.o -lxml2 -lz -lxml2 -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuSevBY/R.INSTALL27498f5d5b95b3/XML/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-XML/00new/XML/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘source’ from package ‘base’ in package ‘XML’ in method for ‘xmlAttrsToDataFrame’ with signature ‘"AsIs"’: no definition for class “AsIs” in method for ‘readKeyValueDB’ with signature ‘"AsIs"’: no definition for class “AsIs” in method for ‘readSolrDoc’ with signature ‘"AsIs"’: no definition for class “AsIs” ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (XML) * installing *source* package ‘processx’ ... ** package ‘processx’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsBdU0X/R.INSTALL277fd21a87ab90/processx/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -Wl,-O1 -Wall tools/px.c -o tools/px clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -Wl,-O1 -I../inst/include -Wall tools/sock.c -o tools/sock clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -Wl,-O1 supervisor/supervisor.c \ supervisor/utils.c -o supervisor/supervisor clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c client.c -o client.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c errors.c -o errors.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L"/home/hornik/tmp/R-d-clang-xtra/lib" -Wl,-O1 -o client.so base64.o client.o errors.o \ -L"/home/hornik/tmp/R-d-clang-xtra/lib" -lR if [ -n "" ]; then \ echo Removing libR.so dependency from client.so; \ patchelf --remove-needed libR.so client.so; \ fi clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c poll.c -o poll.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c processx-connection.c -o processx-connection.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c processx-vector.c -o processx-vector.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c create-time.c -o create-time.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/childlist.c -o unix/childlist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/connection.c -o unix/connection.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/processx.c -o unix/processx.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/sigchld.c -o unix/sigchld.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/utils.c -o unix/utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unix/named_pipe.c -o unix/named_pipe.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsBdU0X/R.INSTALL277fd21a87ab90/processx/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-processx/00new/processx ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (processx) begin installing package ‘callr’ * installing *source* package ‘openssl’ ... ** package ‘openssl’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS= Using PKG_LIBS=-l:libssl.so.3 -l:libcrypto.so.3 ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQvsjmu/R.INSTALL2785ac74ae7e85/openssl/src' rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c aes.c -o aes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c base64.c -o base64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bignum.c -o bignum.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cert.c -o cert.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c compatibility.c -o compatibility.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diffie.c -o diffie.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c envelope.c -o envelope.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c error.c -o error.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hash.c -o hash.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c info.c -o info.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c keygen.c -o keygen.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c keys.c -o keys.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c onload.c -o onload.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c openssh.c -o openssh.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c password.c -o password.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pbkdf.c -o pbkdf.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pem.c -o pem.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pkcs12.c -o pkcs12.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pkcs7.c -o pkcs7.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rand.c -o rand.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rsa.c -o rsa.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c signing.c -o signing.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ssl.c -o ssl.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stream.c -o stream.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write.c -o write.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c x25519.c -o x25519.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bcrypt/blowfish.c -o bcrypt/blowfish.o ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.3 -l:libcrypto.so.3 -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQvsjmu/R.INSTALL2785ac74ae7e85/openssl/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-openssl/00new/openssl/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (openssl) begin installing package ‘httr’ * installing *source* package ‘affyio’ ... ** package ‘affyio’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... yes checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to accept ISO C89... none needed checking how to run the C preprocessor... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for main in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes checking for pthread_create in -lpthread... yes checking if we can use pthreads... yes checking if PTHREAD_STACK_MIN is defined... yes configure: Enabling threading for affyio configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwDXxjq/R.INSTALL277e06747c8409/affyio/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c fread_functions.c -o fread_functions.o fread_functions.c:728:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 728 | void test_parsers_le(){ | ^ | void fread_functions.c:801:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 801 | void test_parsers_be(){ | ^ | void 2 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c init_package.c -o init_package.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_abatch.c -o read_abatch.o read_abatch.c:656:207: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 656 | Rprintf("Warning: found an empty line where not expected in %s.\nThis means that there is a cel intensity missing from the cel file.\nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~~ ^~~ | %zu read_abatch.c:656:212: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 656 | Rprintf("Warning: found an empty line where not expected in %s.\nThis means that there is a cel intensity missing from the cel file.\nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~~ ^ | %zu read_abatch.c:665:177: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:665:182: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:677:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:677:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:689:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:689:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:764:209: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 764 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~~ ^~~ | %zu read_abatch.c:764:214: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 764 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~~ ^ | %zu read_abatch.c:774:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 774 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:774:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 774 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:785:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 785 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:785:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 785 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:795:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 795 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:795:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 795 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:805:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 805 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:805:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 805 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:870:209: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 870 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~~ ^~~ | %zu read_abatch.c:870:214: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 870 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~~ ^ | %zu read_abatch.c:879:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 879 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:879:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 879 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:890:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 890 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:890:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 890 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:901:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 901 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:901:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 901 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:913:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 913 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:913:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 913 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:924:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 924 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:924:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 924 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1567:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1567 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1567:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1567 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1578:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1578 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1578:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1578 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1589:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1589 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1589:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1589 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1665:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1665:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1677:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1677:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1689:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1689:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1701:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1701 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1701:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1701 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1769:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1769 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1769:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1769 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1780:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1780 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1780:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1780 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1791:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1791 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1791:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1791 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1801:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1801 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1801:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1801 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu read_abatch.c:1811:176: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1811 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~ | %zu read_abatch.c:1811:181: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 1811 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~~ ^~~~ | %zu 54 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_bpmap.c -o read_bpmap.o read_bpmap.c:849:42: warning: format specifies type 'char *' but the argument has type 'SEXP' (aka 'struct SEXPREC *') [-Wformat] 849 | error("Unable to open the file %s",filename); | ~~ ^~~~~~~~ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_cdf_xda.c -o read_cdf_xda.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_cdffile2.c -o read_cdffile2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_celfile_generic.c -o read_celfile_generic.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_clf.c -o read_clf.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_generic.c -o read_generic.o read_generic.c:1293:42: warning: format specifies type 'double' but the argument has type 'int' [-Wformat] 1293 | Rprintf("Its a float value is %f\n",temp32); | ~~ ^~~~~~ | %d read_generic.c:1293:42: warning: variable 'temp32' is uninitialized when used here [-Wuninitialized] 1293 | Rprintf("Its a float value is %f\n",temp32); | ^~~~~~ read_generic.c:1283:13: note: initialize the variable 'temp32' to silence this warning 1283 | int temp32; | ^ | = 0 2 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_multichannel_celfile_generic.c -o read_multichannel_celfile_generic.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c read_pgf.c -o read_pgf.o read_pgf.c:363:12: warning: unused function 'token_ends_with' [-Wunused-function] 363 | static int token_ends_with(char *token, char *ends_in){ | ^~~~~~~~~~~~~~~ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o affyio.so fread_functions.o init_package.o read_abatch.o read_bpmap.o read_cdf_xda.o read_cdffile2.o read_celfile_generic.o read_clf.o read_generic.o read_multichannel_celfile_generic.o read_pgf.o -lpthread -lz -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwDXxjq/R.INSTALL277e06747c8409/affyio/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-affyio/00new/affyio/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affyio) * installing *source* package ‘rlang’ ... ** package ‘rlang’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpaMqlQ4/R.INSTALL275add1a83f50b/rlang/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c capture.c -o capture.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c internal.c -o internal.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rlang.c -o rlang.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c version.c -o version.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o rlang.so capture.o internal.o rlang.o version.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpaMqlQ4/R.INSTALL275add1a83f50b/rlang/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-rlang/00new/rlang/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlang) begin installing package ‘lifecycle’ begin installing package ‘htmltools’ begin installing package ‘cachem’ * installing *source* package ‘MatrixGenerics’ ... ** package ‘MatrixGenerics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘rowAlls’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colAlls’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowAnyNAs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colAnyNAs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowAnys’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colAnys’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowAvgsPerColSet’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colAvgsPerRowSet’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCollapse’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCollapse’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCounts’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCounts’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCummaxs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCummaxs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCummins’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCummins’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCumprods’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCumprods’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowCumsums’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colCumsums’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowIQRDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colIQRDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowIQRs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colIQRs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowLogSumExps’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colLogSumExps’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMadDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMadDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMads’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMads’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMaxs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMaxs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMeans2’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMeans2’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMedians’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMedians’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowMins’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colMins’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowOrderStats’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colOrderStats’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowProds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colProds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowQuantiles’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colQuantiles’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowRanges’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colRanges’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowRanks’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colRanks’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowSdDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colSdDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowSds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colSds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowSums2’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colSums2’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowTabulates’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colTabulates’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowVarDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colVarDiffs’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowVars’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colVars’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowWeightedMads’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colWeightedMads’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowWeightedMeans’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colWeightedMeans’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowWeightedMedians’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colWeightedMedians’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowWeightedSds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colWeightedSds’ in package ‘MatrixGenerics’ Creating a new generic function for ‘rowWeightedVars’ in package ‘MatrixGenerics’ Creating a new generic function for ‘colWeightedVars’ in package ‘MatrixGenerics’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MatrixGenerics) * installing *source* package ‘desc’ ... ** package ‘desc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (desc) * installing *source* package ‘Rcpp’ ... ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPvt3cL/R.INSTALL27587837770639/Rcpp/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c api.cpp -o api.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c attributes.cpp -o attributes.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c barrier.cpp -o barrier.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c date.cpp -o date.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c module.cpp -o module.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c rcpp_init.cpp -o rcpp_init.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPvt3cL/R.INSTALL27587837770639/Rcpp/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rcpp/00new/Rcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcpp) begin installing package ‘magick’ begin installing package ‘plyr’ begin installing package ‘later’ begin installing package ‘Rdisop’ * installing *source* package ‘fs’ ... ** package ‘fs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTzLZc0/R.INSTALL27497922e50ad1/fs/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c dir.cc -o dir.o In file included from dir.cc:6: ./getmode.h:3:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 3 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c error.cc -o error.o In file included from error.cc:1: ./error.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c file.cc -o file.o In file included from file.cc:10: ./error.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c fs.cc -o fs.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c getmode.cc -o getmode.o In file included from getmode.cc:1: ./getmode.h:3:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 3 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c id.cc -o id.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c init.cc -o init.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c link.cc -o link.o In file included from link.cc:6: ./error.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c path.cc -o path.o In file included from path.cc:9: ./error.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c utils.cc -o utils.o In file included from utils.cc:6: ./error.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c unix/getmode.cc -o unix/getmode.o In file included from unix/getmode.cc:1: ./getmode.h:3:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 3 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bsd/setmode.c -o bsd/setmode.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bsd/strmode.c -o bsd/strmode.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libuv-1.44.2/include -I. -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bsd/reallocarray.c -o bsd/reallocarray.o touch libuv-1.44.2/aclocal.m4 && touch libuv-1.44.2/configure && touch libuv-1.44.2/Makefile.in (cd libuv-1.44.2 \ && CC="clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer" CPPFLAGS="-I/usr/local/include" CFLAGS="-g -O3 -Wall -pedantic -fpic -fvisibility=hidden -std=c99" AR="ar" RANLIB="ranlib" LDFLAGS="-Wl,-O1" ./configure --quiet) make --directory=libuv-1.44.2 \ HAVE_DTRACE=0 make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpTzLZc0/R.INSTALL27497922e50ad1/fs/src/libuv-1.44.2' CC src/libuv_la-fs-poll.lo CC src/libuv_la-idna.lo CC src/libuv_la-inet.lo CC src/libuv_la-random.lo CC src/libuv_la-strscpy.lo CC src/libuv_la-threadpool.lo CC src/libuv_la-timer.lo CC src/libuv_la-uv-data-getter-setters.lo CC src/libuv_la-uv-common.lo CC src/libuv_la-version.lo CC src/libuv_la-strtok.lo CC src/unix/libuv_la-async.lo CC src/unix/libuv_la-core.lo CC src/unix/libuv_la-dl.lo CC src/unix/libuv_la-fs.lo CC src/unix/libuv_la-getaddrinfo.lo CC src/unix/libuv_la-getnameinfo.lo CC src/unix/libuv_la-loop-watcher.lo CC src/unix/libuv_la-loop.lo CC src/unix/libuv_la-pipe.lo CC src/unix/libuv_la-poll.lo CC src/unix/libuv_la-process.lo CC src/unix/libuv_la-random-devurandom.lo CC src/unix/libuv_la-signal.lo CC src/unix/libuv_la-stream.lo CC src/unix/libuv_la-tcp.lo CC src/unix/libuv_la-thread.lo CC src/unix/libuv_la-tty.lo CC src/unix/libuv_la-udp.lo CC src/unix/libuv_la-linux-core.lo CC src/unix/libuv_la-linux-inotify.lo CC src/unix/libuv_la-linux-syscalls.lo CC src/unix/libuv_la-procfs-exepath.lo CC src/unix/libuv_la-proctitle.lo CC src/unix/libuv_la-random-getrandom.lo CC src/unix/libuv_la-random-sysctl-linux.lo CC src/unix/libuv_la-epoll.lo CCLD libuv.la make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpTzLZc0/R.INSTALL27497922e50ad1/fs/src/libuv-1.44.2' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o fs.so dir.o error.o file.o fs.o getmode.o id.o init.o link.o path.o utils.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv-1.44.2/.libs/libuv.a -pthread -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTzLZc0/R.INSTALL27497922e50ad1/fs/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-fs/00new/fs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fs) * installing *source* package ‘lifecycle’ ... ** package ‘lifecycle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lifecycle) begin installing package ‘gtable’ begin installing package ‘vctrs’ * installing *source* package ‘cachem’ ... ** package ‘cachem’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9d9Eyk/R.INSTALL279f483ce2f2a4/cachem/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cache.c -o cache.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o cachem.so cache.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9d9Eyk/R.INSTALL279f483ce2f2a4/cachem/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-cachem/00new/cachem/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cachem) begin installing package ‘memoise’ * installing *source* package ‘Biobase’ ... ** package ‘Biobase’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfwZPWZ/R.INSTALL2781975ec50127/Biobase/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rinit.c -o Rinit.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c anyMissing.c -o anyMissing.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c envir.c -o envir.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c matchpt.c -o matchpt.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowMedians.c -o rowMedians.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sublist_extract.c -o sublist_extract.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfwZPWZ/R.INSTALL2781975ec50127/Biobase/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Biobase/00new/Biobase/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Biobase) begin installing package ‘affy’ begin installing package ‘pcaMethods’ * installing *source* package ‘knitr’ ... ** package ‘knitr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (knitr) * installing *source* package ‘memoise’ ... ** package ‘memoise’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (memoise) * installing *source* package ‘diffobj’ ... ** package ‘diffobj’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCvCPOI/R.INSTALL278071afeb99e/diffobj/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diff.c -o diff.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diffobj.c -o diffobj.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o diffobj.so diff.o diffobj.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCvCPOI/R.INSTALL278071afeb99e/diffobj/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-diffobj/00new/diffobj/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (diffobj) begin installing package ‘waldo’ * installing *source* package ‘callr’ ... ** package ‘callr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (callr) begin installing package ‘pkgbuild’ * installing *source* package ‘gtable’ ... ** package ‘gtable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gtable) * installing *source* package ‘httr’ ... ** package ‘httr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httr) * installing *source* package ‘htmltools’ ... ** package ‘htmltools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpqA62o8/R.INSTALL279f45361208a8/htmltools/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c template.c -o template.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o htmltools.so init.o template.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpqA62o8/R.INSTALL279f45361208a8/htmltools/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-htmltools/00new/htmltools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (htmltools) begin installing package ‘sass’ begin installing package ‘jquerylib’ begin installing package ‘fontawesome’ begin installing package ‘crosstalk’ * installing *source* package ‘segmented’ ... ** package ‘segmented’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (segmented) * installing *source* package ‘farver’ ... ** package ‘farver’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZeko5d/R.INSTALL27496e1c2dbb74/farver/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c ColorSpace.cpp -o ColorSpace.o ColorSpace.cpp:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c Comparison.cpp -o Comparison.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c Conversion.cpp -o Conversion.o Conversion.cpp:8:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 8 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c encode.cpp -o encode.o In file included from encode.cpp:1: ./encode.h:8:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 8 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c farver.cpp -o farver.o In file included from farver.cpp:1: ./farver.h:6:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 6 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c init.cpp -o init.o In file included from init.cpp:1: ./farver.h:6:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 6 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o farver.so ColorSpace.o Comparison.o Conversion.o encode.o farver.o init.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZeko5d/R.INSTALL27496e1c2dbb74/farver/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-farver/00new/farver/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (farver) begin installing package ‘scales’ * installing *source* package ‘waldo’ ... ** package ‘waldo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (waldo) * installing *source* package ‘jquerylib’ ... ** package ‘jquerylib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jquerylib) * installing *source* package ‘fontawesome’ ... ** package ‘fontawesome’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fontawesome) * installing *source* package ‘plyr’ ... ** package ‘plyr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4hhW8t/R.INSTALL27a13e22bdd0cc/plyr/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c loop_apply.c -o loop_apply.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c split-numeric.cpp -o split-numeric.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o plyr.so RcppExports.o loop_apply.o split-numeric.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4hhW8t/R.INSTALL27a13e22bdd0cc/plyr/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-plyr/00new/plyr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plyr) begin installing package ‘mzID’ * installing *source* package ‘pkgbuild’ ... ** package ‘pkgbuild’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgbuild) begin installing package ‘pkgload’ * installing *source* package ‘crosstalk’ ... ** package ‘crosstalk’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crosstalk) * installing *source* package ‘BH’ ... ** package ‘BH’ successfully unpacked and MD5 sums checked ** using staged installation ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BH) begin installing package ‘BiocParallel’ * installing *source* package ‘limma’ ... ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpbb2q9k/R.INSTALL277dd55c293473/limma/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c normexp.c -o normexp.o normexp.c:18:8: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 18 | void ex(){} | ^ | void normexp.c:154:10: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 154 | void ex(); | ^ | void normexp.c:166:78: warning: passing 'void (*)()' to parameter of type 'void *' converts between void pointer and function pointer [-Wpedantic] 166 | nmmin(3, par, parsOut, Fmin, normexp_m2loglik_saddle, fail, abstol, intol, &ex, alpha, beta, gamma, trace, fncount, maxit); | ^~~ /home/hornik/tmp/R-d-clang-xtra/include/R_ext/Applic.h:72:51: note: passing argument to parameter 'ex' here 72 | int *fail, double abstol, double intol, void *ex, | ^ 3 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c weighted_lowess.c -o weighted_lowess.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o limma.so init.o normexp.o weighted_lowess.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpbb2q9k/R.INSTALL277dd55c293473/limma/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-limma/00new/limma/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (limma) * installing *source* package ‘later’ ... ** package ‘later’ successfully unpacked and MD5 sums checked ** using staged installation Running configure script -latomic linker flag not needed. Found UBSAN. Will skip tests that raise false positives. ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQ24nor/R.INSTALL27a13f776f321/later/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c callback_registry.cpp -o callback_registry.o In file included from callback_registry.cpp:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c debug.cpp -o debug.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c fd.cpp -o fd.o In file included from fd.cpp:7: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c later.cpp -o later.o In file included from later.cpp:1: In file included from ./later.h:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c later_posix.cpp -o later_posix.o In file included from later_posix.cpp:9: In file included from ./later.h:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c later_win32.cpp -o later_win32.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c timer_posix.cpp -o timer_posix.o In file included from timer_posix.cpp:6: In file included from ./timer_posix.h:8: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c timestamp_unix.cpp -o timestamp_unix.o In file included from timestamp_unix.cpp:5: In file included from ./timeconv.h:9: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] 48 | #define thread_local THREADS_H_ERROR | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c timestamp_win32.cpp -o timestamp_win32.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c tinycthread.c -o tinycthread.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -DRCPP_NO_MODULES -DUSING_UBSAN -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c wref.c -o wref.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o later.so RcppExports.o callback_registry.o debug.o fd.o init.o later.o later_posix.o later_win32.o timer_posix.o timestamp_unix.o timestamp_win32.o tinycthread.o wref.o -pthread -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQ24nor/R.INSTALL27a13f776f321/later/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-later/00new/later/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (later) begin installing package ‘promises’ * installing *source* package ‘affy’ ... ** package ‘affy’ successfully unpacked and MD5 sums checked ** using staged installation creating cache ./config.cache checking how to run the C preprocessor... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -E checking for main in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes updating cache ./config.cache creating ./config.status creating src/Makevars ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFepFlz/R.INSTALL27a64c779f0c9f/affy/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c chipbackground.c -o chipbackground.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c getall_locations.c -o getall_locations.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c mas5calls.c -o mas5calls.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c rma2.c -o rma2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O3 -Wall -pedantic -fpic -g -O3 -Wall -pedantic -c rma_common.c -o rma_common.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFepFlz/R.INSTALL27a64c779f0c9f/affy/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-affy/00new/affy/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affy) * installing *source* package ‘mzID’ ... ** package ‘mzID’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mzID) * installing *source* package ‘scales’ ... ** package ‘scales’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scales) * installing *source* package ‘pkgload’ ... ** package ‘pkgload’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgload) begin installing package ‘testthat’ * installing *source* package ‘data.table’ ... ** package ‘data.table’ successfully unpacked and MD5 sums checked ** using staged installation zlib 1.3.1 is available ok * checking if R installation supports OpenMP without any extra hints... yes ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgDPLyD/R.INSTALL277a7e133663c4/data.table/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c assign.c -o assign.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c between.c -o between.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c bmerge.c -o bmerge.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c chmatch.c -o chmatch.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c cj.c -o cj.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c coalesce.c -o coalesce.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c dogroups.c -o dogroups.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c fastmean.c -o fastmean.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c fcast.c -o fcast.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c fifelse.c -o fifelse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c fmelt.c -o fmelt.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c forder.c -o forder.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c frank.c -o frank.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c fread.c -o fread.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c freadR.c -o freadR.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c froll.c -o froll.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c frollR.c -o frollR.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c frolladaptive.c -o frolladaptive.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c fsort.c -o fsort.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c fwrite.c -o fwrite.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c fwriteR.c -o fwriteR.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c gsumm.c -o gsumm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c idatetime.c -o idatetime.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ijoin.c -o ijoin.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c inrange.c -o inrange.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c nafill.c -o nafill.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c negate.c -o negate.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c nqrecreateindices.c -o nqrecreateindices.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c openmp-utils.c -o openmp-utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c programming.c -o programming.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c quickselect.c -o quickselect.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c rbindlist.c -o rbindlist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c reorder.c -o reorder.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c shift.c -o shift.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c snprintf.c -o snprintf.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c subset.c -o subset.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c transpose.c -o transpose.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c types.c -o types.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c uniqlist.c -o uniqlist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c vecseq.c -o vecseq.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c wrappers.c -o wrappers.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o idatetime.o ijoin.o init.o inrange.o nafill.o negate.o nqrecreateindices.o openmp-utils.o programming.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -lz -L/home/hornik/tmp/R-d-clang-xtra/lib -lR PKG_CFLAGS = -fopenmp PKG_LIBS = -fopenmp -lz if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgDPLyD/R.INSTALL277a7e133663c4/data.table/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-data.table/00new/data.table/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (data.table) * installing *source* package ‘pcaMethods’ ... ** package ‘pcaMethods’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWWnc1D/R.INSTALL27a64a62dccd22/pcaMethods/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c nipals.cpp -o nipals.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o pcaMethods.so RcppExports.o nipals.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWWnc1D/R.INSTALL27a64a62dccd22/pcaMethods/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-pcaMethods/00new/pcaMethods/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘loadings’ in package ‘pcaMethods’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pcaMethods) * installing *source* package ‘kernlab’ ... ** package ‘kernlab’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuLtOSy/R.INSTALL2759bb33509904/kernlab/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c brweight.cpp -o brweight.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c ctable.cpp -o ctable.o ctable.cpp:60:9: warning: variable 'lcp_idx' set but not used [-Wunused-but-set-variable] 60 | UInt32 lcp_idx = 0, lcp_prev_idx = 0; | ^ ctable.cpp:60:22: warning: variable 'lcp_prev_idx' set but not used [-Wunused-but-set-variable] 60 | UInt32 lcp_idx = 0, lcp_prev_idx = 0; | ^ 2 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c cweight.cpp -o cweight.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dbreakpt.c -o dbreakpt.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dcauchy.c -o dcauchy.o dcauchy.c:91:29: warning: variable 'nsteps' set but not used [-Wunused-but-set-variable] 91 | int search, interp, nbrpt, nsteps = 1, i, inc = 1; | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dgpnrm.c -o dgpnrm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dgpstep.c -o dgpstep.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dprecond.c -o dprecond.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dprsrch.c -o dprsrch.o dprsrch.c:93:25: warning: variable 'nsteps' set but not used [-Wunused-but-set-variable] 93 | int search = 1, nbrpt, nsteps = 0, i, inc = 1; | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dspcg.c -o dspcg.o dspcg.c:115:44: warning: variable 'iters' set but not used [-Wunused-but-set-variable] 115 | int i, j, nfaces, nfree, inc = 1, infotr, iters = 0, itertr; | ^ dspcg.c:116:40: warning: variable 'alpha' set but not used [-Wunused-but-set-variable] 116 | double gfnorm, gfnormf, stol = 1e-16, alpha; | ^ 2 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dtron.c -o dtron.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dtrpcg.c -o dtrpcg.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dtrqsol.c -o dtrqsol.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c esa.cpp -o esa.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c expdecayweight.cpp -o expdecayweight.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c inductionsort.cpp -o inductionsort.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c kspectrumweight.cpp -o kspectrumweight.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c lcp.cpp -o lcp.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c misc.c -o misc.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c msufsort.cpp -o msufsort.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c solvebqp.c -o solvebqp.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c stringk.c -o stringk.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stringkernel.cpp -o stringkernel.o In file included from stringkernel.cpp:53: ./stringkernel.h:106:7: warning: private field '_verb' is not used [-Wunused-private-field] 106 | int _verb; | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c svm.cpp -o svm.o svm.cpp:1474:6: warning: variable 'iter' set but not used [-Wunused-but-set-variable] 1474 | int iter = 0, counter = min(l*2, 2000) + 1; | ^ svm.cpp:1549:9: warning: variable 'obj' set but not used [-Wunused-but-set-variable] 1549 | double obj = 0; | ^ svm.cpp:1556:6: warning: variable 'nSV' set but not used [-Wunused-but-set-variable] 1556 | int nSV = 0, nFREE = 0; | ^ svm.cpp:1556:15: warning: variable 'nFREE' set but not used [-Wunused-but-set-variable] 1556 | int nSV = 0, nFREE = 0; | ^ svm.cpp:1857:6: warning: variable 'iter' set but not used [-Wunused-but-set-variable] 1857 | int iter = 0; | ^ svm.cpp:2152:6: warning: 'Solver_B_linear::Solve' hides overloaded virtual function [-Woverloaded-virtual] 2152 | int Solve(int l, svm_node * const * x_, double *b_, schar *y_, | ^ svm.cpp:1709:15: note: hidden overloaded virtual function 'Solver_B::Solve' declared here: different number of parameters (11 vs 12) 1709 | virtual void Solve(int l, const Kernel& Q, double *b_, schar *y_, | ^ svm.cpp:2431:7: warning: 'Solver_MB::Solve' hides overloaded virtual function [-Woverloaded-virtual] 2431 | void Solve(int l, const Kernel& Q, double lin, double *alpha_, | ^ svm.cpp:1709:15: note: hidden overloaded virtual function 'Solver_B::Solve' declared here: different number of parameters (11 vs 12) 1709 | virtual void Solve(int l, const Kernel& Q, double *b_, schar *y_, | ^ svm.cpp:2665:6: warning: variable 'iter' set but not used [-Wunused-but-set-variable] 2665 | int iter = 0; | ^ svm.cpp:3626:7: warning: variable 'totaliter' set but not used [-Wunused-but-set-variable] 3626 | int totaliter = 0; | ^ svm.cpp:3715:7: warning: variable 'totaliter' set but not used [-Wunused-but-set-variable] 3715 | int totaliter = 0; | ^ svm.cpp:3758:9: warning: variable 'sum_alpha' set but not used [-Wunused-but-set-variable] 3758 | double sum_alpha = 0; | ^ svm.cpp:3888:17: warning: variable 's' set but not used [-Wunused-but-set-variable] 3888 | const char* s; | ^ svm.cpp:4110:11: warning: variable 'sum_alpha' set but not used [-Wunused-but-set-variable] 4110 | double sum_alpha = 0; | ^ svm.cpp:4189:17: warning: variable 's' set but not used [-Wunused-but-set-variable] 4189 | const char* s; | ^ 14 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c wkasailcp.cpp -o wkasailcp.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c wmsufsort.cpp -o wmsufsort.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o kernlab.so brweight.o ctable.o cweight.o dbreakpt.o dcauchy.o dgpnrm.o dgpstep.o dprecond.o dprsrch.o dspcg.o dtron.o dtrpcg.o dtrqsol.o esa.o expdecayweight.o inductionsort.o init.o kspectrumweight.o lcp.o misc.o msufsort.o solvebqp.o stringk.o stringkernel.o svm.o wkasailcp.o wmsufsort.o -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuLtOSy/R.INSTALL2759bb33509904/kernlab/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-kernlab/00new/kernlab/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘pattern’ in package ‘kernlab’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kernlab) * installing *source* package ‘Rdisop’ ... ** package ‘Rdisop’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYHwZQC/R.INSTALL27a13b5dcdc6ce/Rdisop/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c disop.cpp -o disop.o disop.cpp:106:8: warning: unused variable 'parityeven' [-Wunused-variable] 106 | bool parityeven = !parityodd; | ^~~~~~~~~~ disop.cpp:191:6: warning: unused variable 'number_molecules_shown' [-Wunused-variable] 191 | int number_molecules_shown = 100; | ^~~~~~~~~~~~~~~~~~~~~~ In file included from disop.cpp:28: ./imslib/src/ims/decomp/decomputils.h:92:53: warning: unused typedef 'weight_type' [-Wunused-local-typedef] 92 | typedef typename DecompositionWeights::weight_type weight_type; | ^ disop.cpp:169:39: warning: unused typedef 'mass_type' [-Wunused-local-typedef] 169 | typedef distribution_t::mass_type mass_type; | ^ disop.cpp:171:47: warning: unused typedef 'nominal_mass_type' [-Wunused-local-typedef] 171 | typedef distribution_t::nominal_mass_type nominal_mass_type; | ^ disop.cpp:174:42: warning: unused typedef 'decomposition_type' [-Wunused-local-typedef] 174 | typedef decompositions_t::value_type decomposition_type; | ^ disop.cpp:377:40: warning: unused typedef 'mass_type' [-Wunused-local-typedef] 377 | typedef distribution_t::mass_type mass_type; | ^ disop.cpp:626:43: warning: unused typedef 'scorer_type' [-Wunused-local-typedef] 626 | typedef DistributionProbabilityScorer scorer_type; | ^ disop.cpp:709:32: warning: unused typedef 'elements_type' [-Wunused-local-typedef] 709 | typedef alphabet_t::container elements_type; | ^ disop.cpp:814:33: warning: unused typedef 'elements_type' [-Wunused-local-typedef] 814 | typedef alphabet_t::container elements_type; | ^ 10 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/element.cpp -o imslib/src/ims/element.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/composedelement.cpp -o imslib/src/ims/composedelement.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/isotopedistribution.cpp -o imslib/src/ims/isotopedistribution.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/alphabet.cpp -o imslib/src/ims/alphabet.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/weights.cpp -o imslib/src/ims/weights.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/distributedalphabet.cpp -o imslib/src/ims/distributedalphabet.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/transformation.cpp -o imslib/src/ims/transformation.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/isotopespecies.cpp -o imslib/src/ims/isotopespecies.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/base/parser/alphabettextparser.cpp -o imslib/src/ims/base/parser/alphabettextparser.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/base/parser/distributedalphabettextparser.cpp -o imslib/src/ims/base/parser/distributedalphabettextparser.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/base/parser/massestextparser.cpp -o imslib/src/ims/base/parser/massestextparser.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/base/parser/moleculesequenceparser.cpp -o imslib/src/ims/base/parser/moleculesequenceparser.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/base/parser/standardmoleculesequenceparser.cpp -o imslib/src/ims/base/parser/standardmoleculesequenceparser.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/base/parser/keggligandcompoundsparser.cpp -o imslib/src/ims/base/parser/keggligandcompoundsparser.o imslib/src/ims/base/parser/keggligandcompoundsparser.cpp:53:31: warning: '&&' within '||' [-Wlogical-op-parentheses] 53 | for (; letter_pos < last_pos && | ~~~~~~~~~~~~~~~~~~~~~~^~ 54 | ( std::isalpha(sequence[letter_pos]) && std::isupper(sequence[letter_pos])) || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ imslib/src/ims/base/parser/keggligandcompoundsparser.cpp:53:31: note: place parentheses around the '&&' expression to silence this warning 53 | for (; letter_pos < last_pos && | ^ | ( 54 | ( std::isalpha(sequence[letter_pos]) && std::isupper(sequence[letter_pos])) || | ) 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/base/parser/moleculeionchargemodificationparser.cpp -o imslib/src/ims/base/parser/moleculeionchargemodificationparser.o imslib/src/ims/base/parser/moleculeionchargemodificationparser.cpp:102:18: warning: variable 'i' set but not used [-Wunused-but-set-variable] 102 | for (size_type i = 0; letter_pos < len && | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/calib/linepairstabber.cpp -o imslib/src/ims/calib/linepairstabber.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/calib/matchmatrix.cpp -o imslib/src/ims/calib/matchmatrix.o imslib/src/ims/calib/matchmatrix.cpp:84:6: warning: variable 'score' set but not used [-Wunused-but-set-variable] 84 | int score = 0; | ^ imslib/src/ims/calib/matchmatrix.cpp:106:6: warning: variable 'score' set but not used [-Wunused-but-set-variable] 106 | int score = 0; | ^ 2 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/calib/linearpointsetmatcher.cpp -o imslib/src/ims/calib/linearpointsetmatcher.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/decomp/realmassdecomposer.cpp -o imslib/src/ims/decomp/realmassdecomposer.o In file included from imslib/src/ims/decomp/realmassdecomposer.cpp:9: ./imslib/src/ims/decomp/decomputils.h:92:53: warning: unused typedef 'weight_type' [-Wunused-local-typedef] 92 | typedef typename DecompositionWeights::weight_type weight_type; | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/utils/distribution.cpp -o imslib/src/ims/utils/distribution.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/distributionprobabilityscorer.cpp -o imslib/src/ims/distributionprobabilityscorer.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/characteralphabet.cpp -o imslib/src/ims/characteralphabet.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./imslib/src/ -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imslib/src/ims/nitrogenrulefilter.cpp -o imslib/src/ims/nitrogenrulefilter.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o Rdisop.so disop.o imslib/src/ims/element.o imslib/src/ims/composedelement.o imslib/src/ims/isotopedistribution.o imslib/src/ims/alphabet.o imslib/src/ims/weights.o imslib/src/ims/distributedalphabet.o imslib/src/ims/transformation.o imslib/src/ims/isotopespecies.o imslib/src/ims/base/parser/alphabettextparser.o imslib/src/ims/base/parser/distributedalphabettextparser.o imslib/src/ims/base/parser/massestextparser.o imslib/src/ims/base/parser/moleculesequenceparser.o imslib/src/ims/base/parser/standardmoleculesequenceparser.o imslib/src/ims/base/parser/keggligandcompoundsparser.o imslib/src/ims/base/parser/moleculeionchargemodificationparser.o imslib/src/ims/calib/linepairstabber.o imslib/src/ims/calib/matchmatrix.o imslib/src/ims/calib/linearpointsetmatcher.o imslib/src/ims/decomp/realmassdecomposer.o imslib/src/ims/utils/distribution.o imslib/src/ims/distributionprobabilityscorer.o imslib/src/ims/characteralphabet.o imslib/src/ims/nitrogenrulefilter.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYHwZQC/R.INSTALL27a13b5dcdc6ce/Rdisop/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rdisop/00new/Rdisop/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rdisop) * installing *source* package ‘S4Vectors’ ... ** package ‘S4Vectors’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdeexPi/R.INSTALL2782827bafd408/S4Vectors/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c AEbufs.c -o AEbufs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c DataFrame_class.c -o DataFrame_class.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Hits_class.c -o Hits_class.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c LLint_class.c -o LLint_class.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c List_class.c -o List_class.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_S4Vectors.c -o R_init_S4Vectors.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rle_class.c -o Rle_class.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rle_utils.c -o Rle_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SEXP_utils.c -o SEXP_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SimpleList_class.c -o SimpleList_class.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c anyMissing.c -o anyMissing.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c character_utils.c -o character_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c eval_utils.c -o eval_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hash_utils.c -o hash_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c integer_utils.c -o integer_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c logical_utils.c -o logical_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c map_ranges_to_runs.c -o map_ranges_to_runs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c raw_utils.c -o raw_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c safe_arithm.c -o safe_arithm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sort_utils.c -o sort_utils.o sort_utils.c:263:13: warning: unused function 'sort_uchar_array' [-Wunused-function] 263 | static void sort_uchar_array(unsigned char *x, int nelt, int desc) | ^~~~~~~~~~~~~~~~ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c subsetting_utils.c -o subsetting_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vector_utils.c -o vector_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o S4Vectors.so AEbufs.o DataFrame_class.o Hits_class.o LLint_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o character_utils.o eval_utils.o hash_utils.o integer_utils.o logical_utils.o map_ranges_to_runs.o raw_utils.o safe_arithm.o sort_utils.o subsetting_utils.o vector_utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdeexPi/R.INSTALL2782827bafd408/S4Vectors/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-S4Vectors/00new/S4Vectors/libs ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘normalizeSingleBracketReplacementValue’ with signature ‘"List"’: no definition for class “List” Creating a new generic function for ‘unname’ in package ‘S4Vectors’ Creating a new generic function for ‘expand.grid’ in package ‘S4Vectors’ Creating a new generic function for ‘findMatches’ in package ‘S4Vectors’ Creating a generic function for ‘setequal’ from package ‘base’ in package ‘S4Vectors’ in method for ‘coerce’ with signature ‘"Hits","DFrame"’: no definition for class “DFrame” Creating a generic function for ‘as.factor’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘tabulate’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘cov’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘cor’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘substr’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘substring’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘chartr’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘tolower’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘toupper’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘sub’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘gsub’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘nlevels’ from package ‘base’ in package ‘S4Vectors’ in method for ‘coerce’ with signature ‘"data.table","DFrame"’: no definition for class “data.table” Creating a generic function for ‘complete.cases’ from package ‘stats’ in package ‘S4Vectors’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (S4Vectors) begin installing package ‘IRanges’ begin installing package ‘MsCoreUtils’ begin installing package ‘UCSC.utils’ * installing *source* package ‘promises’ ... ** package ‘promises’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpatmqSc/R.INSTALL27b2a4639dff43/promises/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c promise_task.cpp -o promise_task.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o promises.so RcppExports.o promise_task.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpatmqSc/R.INSTALL27b2a4639dff43/promises/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-promises/00new/promises/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (promises) begin installing package ‘httpuv’ * installing *source* package ‘vctrs’ ... ** package ‘vctrs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFKFLTR/R.INSTALL27a45d3c45b256/vctrs/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c altrep-lazy-character.c -o altrep-lazy-character.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c altrep-rle.c -o altrep-rle.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c altrep.c -o altrep.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c arg-counter.c -o arg-counter.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c arg.c -o arg.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c assert.c -o assert.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c bind.c -o bind.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c c-unchop.c -o c-unchop.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c c.c -o c.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c callables.c -o callables.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cast-bare.c -o cast-bare.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cast-dispatch.c -o cast-dispatch.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cast.c -o cast.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c compare.c -o compare.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c complete.c -o complete.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c conditions.c -o conditions.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c dictionary.c -o dictionary.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c dim.c -o dim.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c empty.c -o empty.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c equal.c -o equal.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c expand.c -o expand.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c fields.c -o fields.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c fill.c -o fill.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c globals.c -o globals.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c group.c -o group.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c growable.c -o growable.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c hash.c -o hash.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c interval.c -o interval.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c match-joint.c -o match-joint.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c match.c -o match.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c missing.c -o missing.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c names.c -o names.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order-collate.c -o order-collate.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order-groups.c -o order-groups.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order-sortedness.c -o order-sortedness.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order-truelength.c -o order-truelength.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c order.c -o order.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c poly-op.c -o poly-op.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c proxy-restore.c -o proxy-restore.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c proxy.c -o proxy.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ptype-common.c -o ptype-common.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ptype.c -o ptype.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ptype2-dispatch.c -o ptype2-dispatch.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c ptype2.c -o ptype2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rank.c -o rank.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rep.c -o rep.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rlang-dev.c -o rlang-dev.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rlang.c -o rlang.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c runs.c -o runs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c set.c -o set.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c shape.c -o shape.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c size-common.c -o size-common.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c size.c -o size.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-array.c -o slice-array.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-assign-array.c -o slice-assign-array.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-assign.c -o slice-assign.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-chop.c -o slice-chop.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice-interleave.c -o slice-interleave.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c slice.c -o slice.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c split.c -o split.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c subscript-loc.c -o subscript-loc.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c subscript.c -o subscript.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c translate.c -o translate.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-data-frame.c -o type-data-frame.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-date-time.c -o type-date-time.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-factor.c -o type-factor.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-info.c -o type-info.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-integer64.c -o type-integer64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c type-tibble.c -o type-tibble.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c typeof2-s3.c -o typeof2-s3.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c typeof2.c -o typeof2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c unspecified.c -o unspecified.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils-dispatch.c -o utils-dispatch.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vctrs-core.c -o vctrs-core.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./rlang -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c version.c -o version.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o vctrs.so altrep-lazy-character.o altrep-rle.o altrep.o arg-counter.o arg.o assert.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o empty.o equal.o expand.o fields.o fill.o globals.o group.o growable.o hash.o init.o interval.o match-joint.o match.o missing.o names.o order-collate.o order-groups.o order-sortedness.o order-truelength.o order.o poly-op.o proxy-restore.o proxy.o ptype-common.o ptype.o ptype2-dispatch.o ptype2.o rank.o rep.o rlang-dev.o rlang.o runs.o set.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice-interleave.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-integer64.o type-tibble.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils.o vctrs-core.o version.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFKFLTR/R.INSTALL27a45d3c45b256/vctrs/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-vctrs/00new/vctrs/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vctrs) begin installing package ‘hms’ begin installing package ‘tidyselect’ begin installing package ‘pillar’ begin installing package ‘purrr’ begin installing package ‘igraph’ * installing *source* package ‘BiocParallel’ ... ** package ‘BiocParallel’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 accepts -g... yes checking for clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 option to enable C++11 features... none needed checking for library containing shm_open... none required checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/mman.h... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1)’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdZZfCK/R.INSTALL27ae4364db011b/BiocParallel/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c cpp11.cpp -o cpp11.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c ipcmutex.cpp -o ipcmutex.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o BiocParallel.so cpp11.o ipcmutex.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdZZfCK/R.INSTALL27ae4364db011b/BiocParallel/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-BiocParallel/00new/BiocParallel/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocParallel) * installing *source* package ‘hms’ ... ** package ‘hms’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hms) begin installing package ‘progress’ * installing *source* package ‘UCSC.utils’ ... ** package ‘UCSC.utils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (UCSC.utils) * installing *source* package ‘tidyselect’ ... ** package ‘tidyselect’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidyselect) * installing *source* package ‘MsCoreUtils’ ... ** package ‘MsCoreUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpySEuOY/R.INSTALL27b9cc5b011a43/MsCoreUtils/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c between.c -o between.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c closest.c -o closest.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c impNeighbourAvg.c -o impNeighbourAvg.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c join.c -o join.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c localMaxima.c -o localMaxima.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lowerConvexHull.c -o lowerConvexHull.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c maxi.c -o maxi.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c morphologicalFilters.c -o morphologicalFilters.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c snip.c -o snip.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sumi.c -o sumi.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c which.c -o which.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o MsCoreUtils.so between.o closest.o impNeighbourAvg.o init.o join.o localMaxima.o lowerConvexHull.o maxi.o morphologicalFilters.o snip.o sumi.o which.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpySEuOY/R.INSTALL27b9cc5b011a43/MsCoreUtils/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-MsCoreUtils/00new/MsCoreUtils/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MsCoreUtils) begin installing package ‘MetaboCoreUtils’ * installing *source* package ‘progress’ ... ** package ‘progress’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (progress) * installing *source* package ‘purrr’ ... ** package ‘purrr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpphclHQ/R.INSTALL27bb5e4becf530/purrr/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c backports.c -o backports.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cleancall.c -o cleancall.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c coerce.c -o coerce.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c conditions.c -o conditions.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c flatten.c -o flatten.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c map.c -o map.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c pluck.c -o pluck.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c transpose.c -o transpose.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o purrr.so backports.o cleancall.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpphclHQ/R.INSTALL27bb5e4becf530/purrr/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-purrr/00new/purrr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (purrr) * installing *source* package ‘pillar’ ... ** package ‘pillar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pillar) begin installing package ‘tibble’ * installing *source* package ‘MetaboCoreUtils’ ... ** package ‘MetaboCoreUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MetaboCoreUtils) * installing *source* package ‘tibble’ ... ** package ‘tibble’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpj3zO6W/R.INSTALL27c23e20854b45/tibble/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c attributes.c -o attributes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c coerce.c -o coerce.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c matrixToDataFrame.c -o matrixToDataFrame.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpj3zO6W/R.INSTALL27c23e20854b45/tibble/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-tibble/00new/tibble/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tibble) begin installing package ‘ggplot2’ begin installing package ‘dplyr’ * installing *source* package ‘magick’ ... ** package ‘magick’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 Using PKG_LIBS=-lMagick++-7.Q16 -lMagickWand-7.Q16 -lMagickCore-7.Q16 ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmbWhPI/R.INSTALL27a1392ee5a511/magick/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c animation.cpp -o animation.o In file included from animation.cpp:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c attributes.cpp -o attributes.o In file included from attributes.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c base.cpp -o base.o In file included from base.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c color.cpp -o color.o In file included from color.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c composite.cpp -o composite.o In file included from composite.cpp:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c config.cc -o config.o In file included from config.cc:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c convolve.cpp -o convolve.o In file included from convolve.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c device.cpp -o device.o In file included from device.cpp:9: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c edges.cpp -o edges.o In file included from edges.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c edit.cpp -o edit.o In file included from edit.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c fonts.cpp -o fonts.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c options.cpp -o options.o In file included from options.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c properties.cpp -o properties.o In file included from properties.cpp:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c resize.cpp -o resize.o In file included from resize.cpp:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c segment.cpp -o segment.o In file included from segment.cpp:1: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu/ImageMagick-7 -I/usr/include/ImageMagick-7 -fopenmp -DMAGICKCORE_HDRI_ENABLE=0 -DMAGICKCORE_QUANTUM_DEPTH=16 -DMAGICKCORE_CHANNEL_MASK_DEPTH=32 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c transformations.cpp -o transformations.o In file included from transformations.cpp:6: ./magick_types.h:1:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 1 | #define R_NO_REMAP | ^ :7:9: note: previous definition is here 7 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o magick.so RcppExports.o animation.o attributes.o base.o color.o composite.o config.o convolve.o device.o edges.o edit.o fonts.o options.o properties.o resize.o segment.o transformations.o -lMagick++-7.Q16 -lMagickWand-7.Q16 -lMagickCore-7.Q16 -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmbWhPI/R.INSTALL27a1392ee5a511/magick/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-magick/00new/magick/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (magick) begin installing package ‘animation’ * installing *source* package ‘stringi’ ... ** package ‘stringi’ successfully unpacked and MD5 sums checked ** using staged installation checking for R_HOME... /home/hornik/tmp/R-d-clang-xtra checking for R... /home/hornik/tmp/R-d-clang-xtra/bin/R checking for endianness... little checking for cat... /usr/bin/cat checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 accepts -g... yes checking for clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 option to enable C++11 features... none needed checking whether the C++ compiler supports the 'long long' type... yes checking whether the compiler implements namespaces... yes checking whether the compiler supports the Standard Template Library... yes checking whether std::map is available... yes checking for pkg-config... /usr/bin/pkg-config checking with 'pkg-config' for the system ICU4C (icu-i18n icu-uc)... 72.1 checking for ICU4C >= 61... yes checking for additional CPPFLAGS, LDFLAGS, and LIBS required... done checking whether an ICU4C-based project can be built... yes checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes checking the capabilities of the ICU data library (ucnv, uloc, utrans)... yes checking the capabilities of the ICU data library (ucol)... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for elf.h... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/uconfig_local.h config.status: creating src/install.libs.R *** stringi configure summary: ICU_FOUND=1 STRINGI_CXXSTD= STRINGI_CXXFLAGS= -fpic STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H STRINGI_LDFLAGS= -L/usr/lib/x86_64-linux-gnu STRINGI_LIBS= -licui18n -licuuc -licudata *** Compiler settings used: CXX=clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 LD=clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 CXXFLAGS=-g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw CPPFLAGS=-I/usr/local/include LDFLAGS= LIBS= ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpulA4fO/R.INSTALL27494c419c440/stringi/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_brkiter.cpp -o stri_brkiter.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_collator.cpp -o stri_collator.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_common.cpp -o stri_common.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_compare.cpp -o stri_compare.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_base.cpp -o stri_container_base.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_listint.cpp -o stri_container_listint.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_listraw.cpp -o stri_container_listraw.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_listutf8.cpp -o stri_container_listutf8.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_regex.cpp -o stri_container_regex.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_usearch.cpp -o stri_container_usearch.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_utf16.cpp -o stri_container_utf16.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_utf8.cpp -o stri_container_utf8.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_encoding_detection.cpp -o stri_encoding_detection.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_encoding_management.cpp -o stri_encoding_management.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_escape.cpp -o stri_escape.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_exception.cpp -o stri_exception.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_ICU_settings.cpp -o stri_ICU_settings.o In file included from stri_ICU_settings.cpp:37: ./uconfig_local.h:42:9: warning: 'UCONFIG_USE_WINDOWS_LCID_MAPPING_API' macro redefined [-Wmacro-redefined] 42 | #define UCONFIG_USE_WINDOWS_LCID_MAPPING_API 0 | ^ /usr/include/unicode/uconfig.h:381:12: note: previous definition is here 381 | # define UCONFIG_USE_WINDOWS_LCID_MAPPING_API 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_join.cpp -o stri_join.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_length.cpp -o stri_length.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_pad.cpp -o stri_pad.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_prepare_arg.cpp -o stri_prepare_arg.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_random.cpp -o stri_random.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_reverse.cpp -o stri_reverse.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_count.cpp -o stri_search_class_count.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_detect.cpp -o stri_search_class_detect.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_extract.cpp -o stri_search_class_extract.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_locate.cpp -o stri_search_class_locate.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_replace.cpp -o stri_search_class_replace.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_split.cpp -o stri_search_class_split.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_subset.cpp -o stri_search_class_subset.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_class_trim.cpp -o stri_search_class_trim.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_common.cpp -o stri_search_common.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_coll_count.cpp -o stri_search_coll_count.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_coll_split.cpp -o stri_search_coll_split.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_in.cpp -o stri_search_in.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_other_split.cpp -o stri_search_other_split.o stri_search_other_split.cpp:202:24: warning: variable 'k' set but not used [-Wunused-but-set-variable] 202 | R_len_t jlast, k=1; | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_regex_count.cpp -o stri_search_regex_count.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_regex_match.cpp -o stri_search_regex_match.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_regex_split.cpp -o stri_search_regex_split.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_sort.cpp -o stri_sort.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_sprintf.cpp -o stri_sprintf.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_stats.cpp -o stri_stats.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_string8.cpp -o stri_string8.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_stringi.cpp -o stri_stringi.o In file included from stri_stringi.cpp:39: ./uconfig_local.h:42:9: warning: 'UCONFIG_USE_WINDOWS_LCID_MAPPING_API' macro redefined [-Wmacro-redefined] 42 | #define UCONFIG_USE_WINDOWS_LCID_MAPPING_API 0 | ^ /usr/include/unicode/uconfig.h:381:12: note: previous definition is here 381 | # define UCONFIG_USE_WINDOWS_LCID_MAPPING_API 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_sub.cpp -o stri_sub.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_test.cpp -o stri_test.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_time_zone.cpp -o stri_time_zone.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_time_calendar.cpp -o stri_time_calendar.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_time_symbols.cpp -o stri_time_symbols.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_time_format.cpp -o stri_time_format.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_trans_casemap.cpp -o stri_trans_casemap.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_trans_other.cpp -o stri_trans_other.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_trans_normalization.cpp -o stri_trans_normalization.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_ucnv.cpp -o stri_ucnv.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_uloc.cpp -o stri_uloc.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_utils.cpp -o stri_utils.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stri_wrap.cpp -o stri_wrap.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_sprintf.o stri_stats.o stri_string8.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpulA4fO/R.INSTALL27494c419c440/stringi/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-stringi/00new/stringi ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stringi) begin installing package ‘stringr’ * installing *source* package ‘animation’ ... ** package ‘animation’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (animation) * installing *source* package ‘stringr’ ... ** package ‘stringr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stringr) begin installing package ‘reshape2’ * installing *source* package ‘reshape2’ ... ** package ‘reshape2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2KoqwA/R.INSTALL27c9af62fad269/reshape2/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c melt.cpp -o melt.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o reshape2.so RcppExports.o melt.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2KoqwA/R.INSTALL27c9af62fad269/reshape2/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-reshape2/00new/reshape2/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reshape2) * installing *source* package ‘testthat’ ... ** package ‘testthat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9P6k4r/R.INSTALL27b41b7cb17e2c/testthat/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c reassign.c -o reassign.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c test-catch.cpp -o test-catch.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c test-example.cpp -o test-example.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c test-runner.cpp -o test-runner.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9P6k4r/R.INSTALL27b41b7cb17e2c/testthat/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-testthat/00new/testthat/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (testthat) * installing *source* package ‘dplyr’ ... ** package ‘dplyr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpI6SagY/R.INSTALL27c75b66e83839/dplyr/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c chop.cpp -o chop.o In file included from chop.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c filter.cpp -o filter.o In file included from filter.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c funs.cpp -o funs.o In file included from funs.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c group_by.cpp -o group_by.o In file included from group_by.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c group_data.cpp -o group_data.o In file included from group_data.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imports.cpp -o imports.o In file included from imports.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c init.cpp -o init.o In file included from init.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c mask.cpp -o mask.o In file included from mask.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c mutate.cpp -o mutate.o In file included from mutate.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c reconstruct.cpp -o reconstruct.o In file included from reconstruct.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c slice.cpp -o slice.o In file included from slice.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c summarise.cpp -o summarise.o In file included from summarise.cpp:1: ./dplyr.h:4:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 4 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o reconstruct.o slice.o summarise.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpI6SagY/R.INSTALL27c75b66e83839/dplyr/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-dplyr/00new/dplyr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dplyr) begin installing package ‘tidyr’ * installing *source* package ‘tidyr’ ... ** package ‘tidyr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYaFpmH/R.INSTALL27ce994f9e2d1f/tidyr/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c cpp11.cpp -o cpp11.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c melt.cpp -o melt.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c simplifyPieces.cpp -o simplifyPieces.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o tidyr.so cpp11.o melt.o simplifyPieces.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYaFpmH/R.INSTALL27ce994f9e2d1f/tidyr/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-tidyr/00new/tidyr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidyr) * installing *source* package ‘ggplot2’ ... ** package ‘ggplot2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggplot2) begin installing package ‘vsn’ * installing *source* package ‘httpuv’ ... ** package ‘httpuv’ successfully unpacked and MD5 sums checked ** using staged installation ** Using libuv found by pkg-config in /usr ** PKG_CFLAGS= ** PKG_LIBS=-luv -lpthread -ldl -lrt ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRvJMzR/R.INSTALL27bae27edc0657/httpuv/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c callback.cpp -o callback.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c callbackqueue.cpp -o callbackqueue.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c filedatasource-unix.cpp -o filedatasource-unix.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c filedatasource-win.cpp -o filedatasource-win.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c fs.cpp -o fs.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c gzipdatasource.cpp -o gzipdatasource.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c http.cpp -o http.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c httprequest.cpp -o httprequest.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c httpresponse.cpp -o httpresponse.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c httpuv.cpp -o httpuv.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c mime.cpp -o mime.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c socket.cpp -o socket.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c staticpath.cpp -o staticpath.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c thread.cpp -o thread.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c timegm.cpp -o timegm.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c utils.cpp -o utils.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c uvutil.cpp -o uvutil.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c webapplication.cpp -o webapplication.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c websockets-base.cpp -o websockets-base.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c websockets-hixie76.cpp -o websockets-hixie76.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c websockets-hybi03.cpp -o websockets-hybi03.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c websockets-ietf.cpp -o websockets-ietf.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c websockets.cpp -o websockets.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c winutils.cpp -o winutils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c http-parser/http_parser.c -o http-parser/http_parser.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c sha1/sha1.c -o sha1/sha1.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -pthread -I'/home/hornik/tmp/CRAN_special_clang-san/Library/later/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c base64/base64.cpp -o base64/base64.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o httpuv.so RcppExports.o callback.o callbackqueue.o filedatasource-unix.o filedatasource-win.o fs.o gzipdatasource.o http.o httprequest.o httpresponse.o httpuv.o md5.o mime.o socket.o staticpath.o thread.o timegm.o utils.o uvutil.o webapplication.o websockets-base.o websockets-hixie76.o websockets-hybi03.o websockets-ietf.o websockets.o winutils.o -luv -lpthread -ldl -lrt ./http-parser/http_parser.o ./sha1/sha1.o ./base64/base64.o -pthread -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRvJMzR/R.INSTALL27bae27edc0657/httpuv/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-httpuv/00new/httpuv/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httpuv) * installing *source* package ‘vsn’ ... ** package ‘vsn’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpls1xHw/R.INSTALL27d2022248fd85/vsn/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vsn.c -o vsn.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vsn2.c -o vsn2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o vsn.so init.o vsn.o vsn2.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpls1xHw/R.INSTALL27d2022248fd85/vsn/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-vsn/00new/vsn/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vsn) * installing *source* package ‘IRanges’ ... ** package ‘IRanges’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYbYQqX/R.INSTALL27b9ce4575a027/IRanges/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c CompressedAtomicList_utils.c -o CompressedAtomicList_utils.o In file included from CompressedAtomicList_utils.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c CompressedIRangesList_class.c -o CompressedIRangesList_class.o In file included from CompressedIRangesList_class.c:4: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c CompressedList_class.c -o CompressedList_class.o In file included from CompressedList_class.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Grouping_class.c -o Grouping_class.o In file included from Grouping_class.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c IPosRanges_comparison.c -o IPosRanges_comparison.o In file included from IPosRanges_comparison.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c IRanges_class.c -o IRanges_class.o In file included from IRanges_class.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c IRanges_constructor.c -o IRanges_constructor.o In file included from IRanges_constructor.c:4: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c NCList.c -o NCList.o In file included from NCList.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void NCList.c:114:56: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 114 | static NCListWalkingStackElt *pop_NCListWalkingStackElt() | ^ | void NCList.c:122:57: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 122 | static NCListWalkingStackElt *peek_NCListWalkingStackElt() | ^ | void NCList.c:127:40: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 127 | static void extend_NCList_walking_stack() | ^ | void NCList.c:172:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 172 | static const NCList *move_to_right_uncle() | ^ | void NCList.c:225:36: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 225 | static const NCList *next_bottom_up() | ^ | void NCList.c:356:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 356 | SEXP C_new_NCList() | ^ | void NCList.c:446:41: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 446 | static void extend_NCList_building_stack() | ^ | void NCList.c:202:22: warning: unused function 'next_top_down' [-Wunused-function] 202 | static const NCList *next_top_down(const NCList *nclist) | ^~~~~~~~~~~~~ NCList.c:1173:13: warning: function 'NCList_get_y_overlaps_rec' is not needed and will not be emitted [-Wunneeded-internal-declaration] 1173 | static void NCList_get_y_overlaps_rec(const NCList *x_nclist, | ^~~~~~~~~~~~~~~~~~~~~~~~~ 10 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_IRanges.c -o R_init_IRanges.o In file included from R_init_IRanges.c:1: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Ranges_class.c -o Ranges_class.o In file included from Ranges_class.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RleViews_utils.c -o RleViews_utils.o In file included from RleViews_utils.c:1: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SimpleIRangesList_class.c -o SimpleIRangesList_class.o In file included from SimpleIRangesList_class.c:4: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c coverage_methods.c -o coverage_methods.o In file included from coverage_methods.c:11: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c extractListFragments.c -o extractListFragments.o In file included from extractListFragments.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c inter_range_methods.c -o inter_range_methods.o In file included from inter_range_methods.c:5: ./IRanges.h:339:18: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 339 | SEXP C_new_NCList(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o IRanges.so CompressedAtomicList_utils.o CompressedIRangesList_class.o CompressedList_class.o Grouping_class.o IPosRanges_comparison.o IRanges_class.o IRanges_constructor.o NCList.o R_init_IRanges.o Ranges_class.o RleViews_utils.o S4Vectors_stubs.o SimpleIRangesList_class.o coverage_methods.o extractListFragments.o inter_range_methods.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYbYQqX/R.INSTALL27b9ce4575a027/IRanges/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-IRanges/00new/IRanges/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘drop’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘IRanges’ Creating a generic function for ‘chartr’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘toupper’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘tolower’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘sub’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘gsub’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘startsWith’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘endsWith’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘IRanges’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IRanges) begin installing package ‘XVector’ begin installing package ‘S4Arrays’ begin installing package ‘GenomeInfoDb’ begin installing package ‘Spectra’ * installing *source* package ‘sass’ ... ** package ‘sass’ successfully unpacked and MD5 sums checked ** using staged installation ** libs /home/hornik/tmp/R-d-clang-xtra/share/make/shlib.mk:18: warning: overriding recipe for target 'shlib-clean' Makevars:12: warning: ignoring old recipe for target 'shlib-clean' using C compiler: ‘Debian clang version 19.1.6 (1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVkY0ye/R.INSTALL27a8ff8f29b6a/sass/src' /home/hornik/tmp/R-d-clang-xtra/share/make/shlib.mk:18: warning: overriding recipe for target 'shlib-clean' Makevars:12: warning: ignoring old recipe for target 'shlib-clean' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libsass/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c compile.c -o compile.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./libsass/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c init.cpp -o init.o MAKEFLAGS= CC="clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer" CFLAGS="-g -O3 -Wall -pedantic" CXX="clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17" AR="ar" LDFLAGS="-Wl,-O1" make -C libsass make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpVkY0ye/R.INSTALL27a8ff8f29b6a/sass/src/libsass' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -g -O3 -Wall -pedantic -O2 -I ./include -fPIC -c -o src/cencode.o src/cencode.c clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast.o src/ast.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_values.o src/ast_values.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_supports.o src/ast_supports.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_cmp.o src/ast_sel_cmp.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_unify.o src/ast_sel_unify.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_super.o src/ast_sel_super.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_sel_weave.o src/ast_sel_weave.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_selectors.o src/ast_selectors.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/context.o src/context.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/constants.o src/constants.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_utils.o src/fn_utils.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_miscs.o src/fn_miscs.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_maps.o src/fn_maps.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_lists.o src/fn_lists.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_colors.o src/fn_colors.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_numbers.o src/fn_numbers.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_strings.o src/fn_strings.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/fn_selectors.o src/fn_selectors.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/color_maps.o src/color_maps.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/environment.o src/environment.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast_fwd_decl.o src/ast_fwd_decl.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/bind.o src/bind.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/file.o src/file.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/util.o src/util.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/util_string.o src/util_string.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/json.o src/json.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/units.o src/units.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/values.o src/values.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/plugins.o src/plugins.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/source.o src/source.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/position.o src/position.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/lexer.o src/lexer.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/parser.o src/parser.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/parser_selectors.o src/parser_selectors.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/prelexer.o src/prelexer.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/eval.o src/eval.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/eval_selectors.o src/eval_selectors.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/expand.o src/expand.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/listize.o src/listize.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/cssize.o src/cssize.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/extender.o src/extender.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/extension.o src/extension.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/stylesheet.o src/stylesheet.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/output.o src/output.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/inspect.o src/inspect.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/emitter.o src/emitter.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/check_nesting.o src/check_nesting.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/remove_placeholders.o src/remove_placeholders.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass.o src/sass.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_values.o src/sass_values.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_context.o src/sass_context.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass_functions.o src/sass_functions.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/sass2scss.o src/sass2scss.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/backtrace.o src/backtrace.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/operators.o src/operators.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/ast2c.o src/ast2c.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/c2ast.o src/c2ast.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/to_value.o src/to_value.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/source_map.o src/source_map.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/error_handling.o src/error_handling.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/memory/allocator.o src/memory/allocator.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/memory/shared_ptr.o src/memory/shared_ptr.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/utf8_string.o src/utf8_string.cpp clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -Wall -O2 -std=c++11 -I ./include -fPIC -c -o src/base64vlq.o src/base64vlq.cpp mkdir lib ar rcvs lib/libsass.a src/cencode.o src/ast.o src/ast_values.o src/ast_supports.o src/ast_sel_cmp.o src/ast_sel_unify.o src/ast_sel_super.o src/ast_sel_weave.o src/ast_selectors.o src/context.o src/constants.o src/fn_utils.o src/fn_miscs.o src/fn_maps.o src/fn_lists.o src/fn_colors.o src/fn_numbers.o src/fn_strings.o src/fn_selectors.o src/color_maps.o src/environment.o src/ast_fwd_decl.o src/bind.o src/file.o src/util.o src/util_string.o src/json.o src/units.o src/values.o src/plugins.o src/source.o src/position.o src/lexer.o src/parser.o src/parser_selectors.o src/prelexer.o src/eval.o src/eval_selectors.o src/expand.o src/listize.o src/cssize.o src/extender.o src/extension.o src/stylesheet.o src/output.o src/inspect.o src/emitter.o src/check_nesting.o src/remove_placeholders.o src/sass.o src/sass_values.o src/sass_context.o src/sass_functions.o src/sass2scss.o src/backtrace.o src/operators.o src/ast2c.o src/c2ast.o src/to_value.o src/source_map.o src/error_handling.o src/memory/allocator.o src/memory/shared_ptr.o src/utf8_string.o src/base64vlq.o a - src/cencode.o a - src/ast.o a - src/ast_values.o a - src/ast_supports.o a - src/ast_sel_cmp.o a - src/ast_sel_unify.o a - src/ast_sel_super.o a - src/ast_sel_weave.o a - src/ast_selectors.o a - src/context.o a - src/constants.o a - src/fn_utils.o a - src/fn_miscs.o a - src/fn_maps.o a - src/fn_lists.o a - src/fn_colors.o a - src/fn_numbers.o a - src/fn_strings.o a - src/fn_selectors.o a - src/color_maps.o a - src/environment.o a - src/ast_fwd_decl.o a - src/bind.o a - src/file.o a - src/util.o a - src/util_string.o a - src/json.o a - src/units.o a - src/values.o a - src/plugins.o a - src/source.o a - src/position.o a - src/lexer.o a - src/parser.o a - src/parser_selectors.o a - src/prelexer.o a - src/eval.o a - src/eval_selectors.o a - src/expand.o a - src/listize.o a - src/cssize.o a - src/extender.o a - src/extension.o a - src/stylesheet.o a - src/output.o a - src/inspect.o a - src/emitter.o a - src/check_nesting.o a - src/remove_placeholders.o a - src/sass.o a - src/sass_values.o a - src/sass_context.o a - src/sass_functions.o a - src/sass2scss.o a - src/backtrace.o a - src/operators.o a - src/ast2c.o a - src/c2ast.o a - src/to_value.o a - src/source_map.o a - src/error_handling.o a - src/memory/allocator.o a - src/memory/shared_ptr.o a - src/utf8_string.o a - src/base64vlq.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpVkY0ye/R.INSTALL27a8ff8f29b6a/sass/src/libsass' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o sass.so compile.o init.o ./libsass/lib/libsass.a -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVkY0ye/R.INSTALL27a8ff8f29b6a/sass/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-sass/00new/sass/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sass) begin installing package ‘bslib’ * installing *source* package ‘bslib’ ... ** package ‘bslib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bslib) begin installing package ‘shiny’ begin installing package ‘rmarkdown’ * installing *source* package ‘GenomeInfoDb’ ... ** package ‘GenomeInfoDb’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomeInfoDb) * installing *source* package ‘XVector’ ... ** package ‘XVector’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnEwKAE/R.INSTALL27d71c272bdef2/XVector/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c IRanges_stubs.c -o IRanges_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Ocopy_byteblocks.c -o Ocopy_byteblocks.o In file included from Ocopy_byteblocks.c:1: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RDS_random_access.c -o RDS_random_access.o In file included from RDS_random_access.c:7: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void RDS_random_access.c:793:11: warning: variable 'x_type' set but not used [-Wunused-but-set-variable] 793 | SEXPTYPE x_type; | ^ RDS_random_access.c:796:18: warning: unused variable 'ans' [-Wunused-variable] 796 | SEXP subscript, ans; | ^~~ 3 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_XVector.c -o R_init_XVector.o In file included from R_init_XVector.c:1: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SharedDouble_class.c -o SharedDouble_class.o In file included from SharedDouble_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SharedInteger_class.c -o SharedInteger_class.o In file included from SharedInteger_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SharedRaw_class.c -o SharedRaw_class.o In file included from SharedRaw_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void SharedRaw_class.c:396:13: warning: variable 'src_tag' set but not used [-Wunused-but-set-variable] 396 | SEXP dest, src_tag; | ^ 2 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c SharedVector_class.c -o SharedVector_class.o In file included from SharedVector_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void SharedVector_class.c:69:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 69 | SEXP externalptr_new() | ^ | void SharedVector_class.c:110:31: warning: format specifies type 'void *' but the argument has type 'SEXP' (aka 'struct SEXPREC *') [-Wformat-pedantic] 110 | Rprintf(" x address: %p\n", x); | ~~ ^ SharedVector_class.c:114:41: warning: format specifies type 'void *' but the argument has type 'SEXP' (aka 'struct SEXPREC *') [-Wformat-pedantic] 114 | Rprintf(" R_ExternalPtrTag(x): %p\n", s); | ~~ ^ SharedVector_class.c:118:47: warning: format specifies type 'void *' but the argument has type 'SEXP' (aka 'struct SEXPREC *') [-Wformat-pedantic] 118 | Rprintf(" R_ExternalPtrProtected(x): %p\n", s); | ~~ ^ 5 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XDouble_class.c -o XDouble_class.o In file included from XDouble_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XInteger_class.c -o XInteger_class.o In file included from XInteger_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XRawList_comparison.c -o XRawList_comparison.o In file included from XRawList_comparison.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XRaw_class.c -o XRaw_class.o In file included from XRaw_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XVectorList_class.c -o XVectorList_class.o In file included from XVectorList_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c XVector_class.c -o XVector_class.o In file included from XVector_class.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c io_utils.c -o io_utils.o In file included from io_utils.c:7: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c slice_methods.c -o slice_methods.o In file included from slice_methods.c:1: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vector_copy.c -o vector_copy.o In file included from vector_copy.c:5: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c view_summarization_methods.c -o view_summarization_methods.o In file included from view_summarization_methods.c:1: ./XVector.h:283:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 283 | SEXP externalptr_new(); | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o XVector.so IRanges_stubs.o Ocopy_byteblocks.o RDS_random_access.o R_init_XVector.o S4Vectors_stubs.o SharedDouble_class.o SharedInteger_class.o SharedRaw_class.o SharedVector_class.o XDouble_class.o XInteger_class.o XRawList_comparison.o XRaw_class.o XVectorList_class.o XVector_class.o io_utils.o slice_methods.o vector_copy.o view_summarization_methods.o -lz -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnEwKAE/R.INSTALL27d71c272bdef2/XVector/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-XVector/00new/XVector/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (XVector) begin installing package ‘GenomicRanges’ * installing *source* package ‘S4Arrays’ ... ** package ‘S4Arrays’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcS0Qbq/R.INSTALL27d71e7bdca083/S4Arrays/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_S4Arrays.c -o R_init_S4Arrays.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c abind.c -o abind.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c array_selection.c -o array_selection.o array_selection.c:91:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 91 | static char *errmsg_buf() | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dim_tuning_utils.c -o dim_tuning_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rowsum.c -o rowsum.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o S4Arrays.so R_init_S4Arrays.o S4Vectors_stubs.o abind.o array_selection.o dim_tuning_utils.o rowsum.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcS0Qbq/R.INSTALL27d71e7bdca083/S4Arrays/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-S4Arrays/00new/S4Arrays/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘rowsum’ in package ‘S4Arrays’ Creating a new generic function for ‘abind’ in package ‘S4Arrays’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (S4Arrays) begin installing package ‘SparseArray’ * installing *source* package ‘Spectra’ ... ** package ‘Spectra’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘entropy’ in package ‘Spectra’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Spectra) * installing *source* package ‘rmarkdown’ ... ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmarkdown) begin installing package ‘htmlwidgets’ * installing *source* package ‘htmlwidgets’ ... ** package ‘htmlwidgets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (htmlwidgets) begin installing package ‘DT’ begin installing package ‘plotly’ * installing *source* package ‘DT’ ... ** package ‘DT’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DT) * installing *source* package ‘Rhdf5lib’ ... ** package ‘Rhdf5lib’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... yes checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to enable C11 features... none needed checking whether the compiler supports GNU C++... yes checking whether clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 accepts -g... yes checking for clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 option to enable C++11 features... none needed COMPILER = clang-19 checking whether C compiler accepts -w... yes checking whether to use -Wl,-rpath setting... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for zlib.h... yes ON_BUILDER=false ON_BUILDER=false checking for szlib.h... yes checking for libaec.h... yes checking for SZ_BufftoBuffCompress in -lsz... yes checking for aec_buffer_encode in -lsz... yes checking for curl/curl.h... yes checking for openssl/evp.h... yes checking for openssl/hmac.h... yes checking for openssl/sha.h... yes checking for curl_global_init in -lcurl... yes checking for EVP_sha256 in -lcrypto... yes S3_VFD=--enable-ros3-vfd configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src' gunzip -dc hdf5small_cxx_hl_1.10.7.tar.gz | tar xf -; cd hdf5; \ ./configure --with-pic --enable-shared=no --enable-cxx --enable-hl \ --enable-tests=no --enable-tools=no \ --with-szlib=yes --with-zlib=yes \ --enable-ros3-vfd \ --enable-sharedlib-rpath \ CC='clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer' CXX='clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17' \ CPPFLAGS='-I/usr/local/include' \ CFLAGS='-g -O3 -Wall -pedantic -w -fpic' \ CXXFLAGS='-w -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -fpic' \ AR='ar' RANLIB='ranlib' \ LDFLAGS='-Wl,-O1'; \ make lib checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking shell variables initial values... done checking if basename works... yes checking if xargs works... yes checking for cached host... none checking for config x86_64-pc-linux-gnu... no checking for config x86_64-pc-linux-gnu... no checking for config pc-linux-gnu... no checking for config pc-linux-gnu... no checking for config x86_64-linux-gnu... no checking for config x86_64-linux-gnu... no checking for config x86_64-pc... no checking for config linux-gnu... found compiler 'clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer' is clang-19.1.6 compiler 'gfortran' is GNU gfortran-14.2.0 compiler 'clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17' is clang-19.1.6 checking for config ./config/site-specific/host-anduin2... no checking for clang sanitizer checks... checking build mode... production checking for gcc... clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer accepts -g... yes checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to enable C11 features... none needed checking whether clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer... gcc3 checking if unsupported combinations of configure options are allowed... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for off_t... yes checking for size_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking whether byte ordering is bigendian... no checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of unsigned... 4 checking size of long... 8 checking size of long long... 8 checking size of __int64... 0 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of __float128... 16 checking size of _Quad... 0 checking for quadmath.h... no checking maximum decimal precision for C... 21 checking if Fortran interface enabled... no checking whether the compiler supports GNU C++... yes checking whether clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 accepts -g... yes checking for clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 option to enable C++11 features... none needed checking dependency style of clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17... gcc3 checking how to run the C++ preprocessor... clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -E checking if c++ interface enabled... yes checking if clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 needs old style header files in includes... no checking if clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 can handle namespaces... yes checking if clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 can handle static cast... yes checking if clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 has offsetof extension... yes checking if the high-level library is enabled... yes checking whether make sets $(MAKE)... (cached) yes checking for tr... /usr/bin/tr checking if srcdir= and time commands work together... yes checking if Java JNI interface enabled... no checking if building tests is disabled... Building HDF5 tests is disabled checking if building tools is disabled... Building HDF5 tools is disabled checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3145728 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer supports -fno-rtti -fno-exceptions... yes checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer option to produce PIC... -fPIC -DPIC checking if clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer PIC flag -fPIC -DPIC works... yes checking if clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer static flag -static works... no checking if clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer supports -c -o file.o... yes checking if clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer supports -c -o file.o... (cached) yes checking whether the clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... yes checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking how to run the C++ preprocessor... clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -E checking for ld used by clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 option to produce PIC... -fPIC -DPIC checking if clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 PIC flag -fPIC -DPIC works... yes checking if clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 static flag -static works... no checking if clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 supports -c -o file.o... yes checking if clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 supports -c -o file.o... (cached) yes checking whether the clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if we should install only statically linked executables... no checking if -Wl,-rpath should be used to link shared libs in nondefault directories... yes checking for ceil in -lm... yes checking for dlopen in -ldl... yes checking for egrep... (cached) /usr/bin/grep -E checking for sys/resource.h... yes checking for sys/time.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/ioctl.h... yes checking for sys/stat.h... (cached) yes checking for sys/socket.h... yes checking for sys/types.h... (cached) yes checking for sys/file.h... yes checking for stddef.h... yes checking for setjmp.h... yes checking for features.h... yes checking for dirent.h... yes checking for stdint.h... (cached) yes checking for stdbool.h... yes checking for netdb.h... yes checking for netinet/in.h... yes checking for arpa/inet.h... yes checking for io.h... no checking for winsock2.h... no checking for sys/timeb.h... yes checking for _FILE_OFFSET_BITS value needed for large files... no checking size of int8_t... 1 checking size of uint8_t... 1 checking size of int_least8_t... 1 checking size of uint_least8_t... 1 checking size of int_fast8_t... 1 checking size of uint_fast8_t... 1 checking size of int16_t... 2 checking size of uint16_t... 2 checking size of int_least16_t... 2 checking size of uint_least16_t... 2 checking size of int_fast16_t... 8 checking size of uint_fast16_t... 8 checking size of int32_t... 4 checking size of uint32_t... 4 checking size of int_least32_t... 4 checking size of uint_least32_t... 4 checking size of int_fast32_t... 8 checking size of uint_fast32_t... 8 checking size of int64_t... 8 checking size of uint64_t... 8 checking size of int_least64_t... 8 checking size of uint_least64_t... 8 checking size of int_fast64_t... 8 checking size of uint_fast64_t... 8 checking size of size_t... 8 checking size of ssize_t... 8 checking size of ptrdiff_t... 8 checking size of off_t... 8 checking size of bool... 1 checking size of time_t... 8 checking if dev_t is scalar... yes checking for dmalloc library... suppressed checking for zlib.h... yes checking for compress2 in -lz... yes checking for compress2... yes checking for szlib.h... yes checking for libaec.h... yes checking for aec_encode in -laec... yes checking for SZ_BufftoBuffCompress in -lsz... yes checking for szlib encoder... no checking for thread safe support... no checking for clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer options needed to detect all undeclared functions... none needed checking whether CLOCK_MONOTONIC is declared... yes checking for tm_gmtoff in struct tm... yes checking for global timezone variable... yes checking for st_blocks in struct stat... no checking for _getvideoconfig... no checking for gettextinfo... no checking for GetConsoleScreenBufferInfo... no checking for getpwuid... yes checking for _scrsize... no checking for ioctl... yes checking for struct videoconfig... no checking for struct text_info... no checking for TIOCGWINSZ... yes checking for TIOCGETD... yes checking for library containing clock_gettime... none required checking for alarm... yes checking for clock_gettime... yes checking for difftime... yes checking for fcntl... yes checking for flock... yes checking for fork... yes checking for frexpf... yes checking for frexpl... yes checking for gethostname... yes checking for getrusage... yes checking for gettimeofday... yes checking for lstat... yes checking for rand_r... yes checking for random... yes checking for setsysinfo... no checking for signal... yes checking for longjmp... yes checking for setjmp... yes checking for siglongjmp... yes checking for sigsetjmp... no checking for sigprocmask... yes checking for snprintf... yes checking for srandom... yes checking for strdup... yes checking for symlink... yes checking for system... yes checking for strtoll... yes checking for strtoull... yes checking for tmpfile... yes checking for asprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for waitpid... yes checking for roundf... yes checking for lroundf... yes checking for llroundf... yes checking for round... yes checking for lround... yes checking for llround... yes checking for an ANSI C-conforming const... yes checking if the compiler understands __inline__... yes checking if the compiler understands __inline... yes checking if the compiler understands inline... yes checking for __attribute__ extension... yes checking for __func__ extension... yes checking for __FUNCTION__ extension... yes checking for C99 designated initialization support... yes checking how to print long long... %ld and %lu checking enable debugging symbols... no checking enable asserts... no checking enable developer warnings... no checking profiling... no checking optimization level... high checking enable file locking... best-effort checking for internal debug output... none checking whether function stack tracking is enabled... no checking for API tracing... no checking whether a memory checking tool will be used... no checking whether internal memory allocation sanity checking is used... no checking for parallel support files... skipped checking whether O_DIRECT is declared... yes checking for posix_memalign... yes checking if the direct I/O virtual file driver (VFD) is enabled... no checking if the Mirror virtual file driver (VFD) is enabled... no checking for curl/curl.h... yes checking for openssl/evp.h... yes checking for openssl/hmac.h... yes checking for openssl/sha.h... yes checking for curl_global_init in -lcurl... yes checking for EVP_sha256 in -lcrypto... yes checking if the Read-Only S3 virtual file driver (VFD) is enabled... yes checking for libhdfs... suppressed checking for custom examples path definition... ${prefix}/share/hdf5_examples checking for custom plugin default path definition... /usr/local/hdf5/lib/plugin checking whether exception handling functions is checked during data conversions... yes checking whether data accuracy is guaranteed during data conversions... yes checking if the machine has window style path name... no checking if using special algorithm to convert long double to (unsigned) long values... no checking if using special algorithm to convert (unsigned) long to long double values... no checking if correctly converting long double to (unsigned) long long values... yes checking if correctly converting (unsigned) long long to long double values... yes checking if the system is IBM ppc64le and cannot correctly convert some long double values... no checking additional programs should be built... no checking if deprecated public symbols are available... yes checking which version of public symbols to use by default... v110 checking whether to perform strict file format checks... no checking for pread... yes checking for pwrite... yes checking whether to use pread/pwrite instead of read/write in certain VFDs... yes checking whether to have library information embedded in the executables... yes checking if alignment restrictions are strictly enforced... no configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/libhdf5.settings config.status: creating Makefile config.status: creating src/Makefile config.status: creating utils/Makefile config.status: creating utils/mirror_vfd/Makefile config.status: creating bin/h5cc config.status: creating bin/Makefile config.status: creating c++/Makefile config.status: creating c++/src/Makefile config.status: creating c++/src/h5c++ config.status: creating hl/Makefile config.status: creating hl/src/Makefile config.status: creating hl/c++/Makefile config.status: creating hl/c++/src/Makefile config.status: creating src/H5config.h config.status: executing pubconf commands creating src/H5pubconf.h Post process src/libhdf5.settings config.status: executing depfiles commands config.status: executing libtool commands config.status: executing .classes commands SUMMARY OF THE HDF5 CONFIGURATION ================================= General Information: ------------------- HDF5 Version: 1.10.7 Configured on: Tue Jan 7 16:38:59 CET 2025 Configured by: hornik@anduin2 Host system: x86_64-pc-linux-gnu Uname information: Linux anduin2 6.11.10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1 (2024-11-23) x86_64 GNU/Linux Byte sex: little-endian Installation point: /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hdf5 Compiling Options: ------------------ Build Mode: production Debugging Symbols: no Asserts: no Profiling: no Optimization Level: high Linking Options: ---------------- Libraries: static Statically Linked Executables: LDFLAGS: -Wl,-O1 H5_LDFLAGS: AM_LDFLAGS: Extra libraries: -lcrypto -lcurl -lsz -laec -lz -ldl -lm Archiver: ar AR_FLAGS: cr Ranlib: ranlib Languages: ---------- C: yes C Compiler: /usr/bin/clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer ( 19.1.6) CPPFLAGS: -I/usr/local/include H5_CPPFLAGS: -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L -DNDEBUG -UH5_DEBUG_API AM_CPPFLAGS: C Flags: -g -O3 -Wall -pedantic -w -fpic H5 C Flags: -std=c99 -Warray-bounds -Wcast-qual -Wconversion -Wdouble-promotion -Wformat=2 -Wframe-larger-than=16384 -Wimplicit-fallthrough -Wno-c++-compat -Wno-format-nonliteral -Wnull-dereference -Wunused-const-variable -Wwrite-strings -Wvolatile-register-var -Wno-self-assign-overloaded -Wno-unknown-warning-option -Wno-missing-noreturn -O3 -Werror=bad-function-cast -Werror=implicit-function-declaration -Werror=incompatible-pointer-types -Werror=missing-declarations -Werror=packed -Werror=shadow -Werror=switch -Wno-error=incompatible-pointer-types-discards-qualifiers -Wunused-function -Wunused-variable -Wunused-parameter -Wcast-align -Wformat AM C Flags: Shared C Library: no Static C Library: yes Fortran: no C++: yes C++ Compiler: /usr/bin/clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 C++ Flags: -w -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -fpic H5 C++ Flags: -std=c++11 -Warray-bounds -Wcast-qual -Wconversion -Wdouble-promotion -Wformat=2 -Wframe-larger-than=16384 -Wimplicit-fallthrough -Wno-c++-compat -Wno-format-nonliteral -Wnull-dereference -Wunused-const-variable -Wwrite-strings -Wvolatile-register-var -Wno-self-assign-overloaded -Wno-unknown-warning-option -O3 -Werror=bad-function-cast -Werror=implicit-function-declaration -Werror=incompatible-pointer-types -Werror=missing-declarations -Werror=packed -Werror=shadow -Werror=switch -Wno-error=incompatible-pointer-types-discards-qualifiers -Wunused-function -Wunused-variable -Wunused-parameter -Wcast-align -Wformat AM C++ Flags: Shared C++ Library: no Static C++ Library: yes Java: no Features: --------- Parallel HDF5: no Parallel Filtered Dataset Writes: no Large Parallel I/O: no High-level library: yes Build HDF5 Tests: no Build HDF5 Tools: no Threadsafety: no Default API mapping: v110 With deprecated public symbols: yes I/O filters (external): deflate(zlib),szip(no encoder) MPE: no Direct VFD: no Mirror VFD: no (Read-Only) S3 VFD: yes (Read-Only) HDFS VFD: no dmalloc: no Packages w/ extra debug output: none API tracing: no Using memory checker: no Memory allocation sanity checks: no Function stack tracing: no Use file locking: best-effort Strict file format checks: no Optimization instrumentation: no make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5' for d in src . c++ hl; do \ if test $d != .; then \ (cd $d && make lib) || exit 1; \ fi; \ done make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src' make[4]: Entering directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src' CC H5.lo CC H5checksum.lo CC H5dbg.lo CC H5system.lo CC H5timer.lo CC H5trace.lo CC H5A.lo CC H5Abtree2.lo CC H5Adense.lo CC H5Adeprec.lo CC H5Aint.lo CC H5Atest.lo CC H5AC.lo CC H5ACdbg.lo CC H5ACproxy_entry.lo CC H5B.lo CC H5Bcache.lo CC H5Bdbg.lo CC H5B2.lo CC H5B2cache.lo CC H5B2dbg.lo CC H5B2hdr.lo CC H5B2int.lo CC H5B2internal.lo CC H5B2leaf.lo CC H5B2stat.lo CC H5B2test.lo CC H5C.lo CC H5Cdbg.lo CC H5Cepoch.lo CC H5Cimage.lo CC H5Clog.lo CC H5Clog_json.lo CC H5Clog_trace.lo CC H5Cprefetched.lo CC H5Cquery.lo CC H5Ctag.lo CC H5Ctest.lo CC H5CS.lo CC H5CX.lo CC H5D.lo CC H5Dbtree.lo CC H5Dbtree2.lo CC H5Dchunk.lo CC H5Dcompact.lo CC H5Dcontig.lo CC H5Ddbg.lo CC H5Ddeprec.lo CC H5Dearray.lo CC H5Defl.lo CC H5Dfarray.lo CC H5Dfill.lo CC H5Dint.lo CC H5Dio.lo CC H5Dlayout.lo CC H5Dnone.lo CC H5Doh.lo CC H5Dscatgath.lo CC H5Dselect.lo CC H5Dsingle.lo CC H5Dtest.lo CC H5Dvirtual.lo CC H5E.lo CC H5Edeprec.lo CC H5Eint.lo CC H5EA.lo CC H5EAcache.lo CC H5EAdbg.lo CC H5EAdblkpage.lo CC H5EAdblock.lo CC H5EAhdr.lo CC H5EAiblock.lo CC H5EAint.lo CC H5EAsblock.lo CC H5EAstat.lo CC H5EAtest.lo CC H5F.lo CC H5Faccum.lo CC H5Fcwfs.lo CC H5Fdbg.lo CC H5Fdeprec.lo CC H5Fefc.lo CC H5Ffake.lo CC H5Fint.lo CC H5Fio.lo CC H5Fmount.lo CC H5Fquery.lo CC H5Fsfile.lo CC H5Fspace.lo CC H5Fsuper.lo CC H5Fsuper_cache.lo CC H5Ftest.lo CC H5FA.lo CC H5FAcache.lo CC H5FAdbg.lo CC H5FAdblock.lo CC H5FAdblkpage.lo CC H5FAhdr.lo CC H5FAint.lo CC H5FAstat.lo CC H5FAtest.lo CC H5FD.lo CC H5FDcore.lo CC H5FDfamily.lo CC H5FDhdfs.lo CC H5FDint.lo CC H5FDlog.lo CC H5FDmulti.lo CC H5FDsec2.lo CC H5FDspace.lo CC H5FDsplitter.lo CC H5FDstdio.lo CC H5FDtest.lo CC H5FL.lo CC H5FO.lo CC H5FS.lo CC H5FScache.lo CC H5FSdbg.lo CC H5FSint.lo CC H5FSsection.lo CC H5FSstat.lo CC H5FStest.lo CC H5G.lo CC H5Gbtree2.lo CC H5Gcache.lo CC H5Gcompact.lo CC H5Gdense.lo CC H5Gdeprec.lo CC H5Gent.lo CC H5Gint.lo CC H5Glink.lo CC H5Gloc.lo CC H5Gname.lo CC H5Gnode.lo CC H5Gobj.lo CC H5Goh.lo CC H5Groot.lo CC H5Gstab.lo CC H5Gtest.lo CC H5Gtraverse.lo CC H5HF.lo CC H5HFbtree2.lo CC H5HFcache.lo CC H5HFdbg.lo CC H5HFdblock.lo CC H5HFdtable.lo CC H5HFhdr.lo CC H5HFhuge.lo CC H5HFiblock.lo CC H5HFiter.lo CC H5HFman.lo CC H5HFsection.lo CC H5HFspace.lo CC H5HFstat.lo CC H5HFtest.lo CC H5HFtiny.lo CC H5HG.lo CC H5HGcache.lo CC H5HGdbg.lo CC H5HGquery.lo CC H5HL.lo CC H5HLcache.lo CC H5HLdbg.lo CC H5HLint.lo CC H5HLprfx.lo CC H5HLdblk.lo CC H5HP.lo CC H5I.lo CC H5Itest.lo CC H5L.lo CC H5Lexternal.lo CC H5make_libsettings.o CCLD H5make_libsettings LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo -Wl,-O1 | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5make_libsettings > H5lib_settings.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5lib_settings.c ; exit 1) CC H5lib_settings.lo CC H5MF.lo CC H5MFaggr.lo CC H5MFdbg.lo CC H5MFsection.lo CC H5MM.lo CC H5MP.lo CC H5MPtest.lo CC H5O.lo CC H5Odeprec.lo CC H5Oainfo.lo CC H5Oalloc.lo CC H5Oattr.lo CC H5Oattribute.lo CC H5Obogus.lo CC H5Obtreek.lo CC H5Ocache.lo CC H5Ocache_image.lo CC H5Ochunk.lo CC H5Ocont.lo CC H5Ocopy.lo CC H5Odbg.lo CC H5Odrvinfo.lo CC H5Odtype.lo CC H5Oefl.lo CC H5Ofill.lo CC H5Oflush.lo CC H5Ofsinfo.lo CC H5Oginfo.lo CC H5Oint.lo CC H5Olayout.lo CC H5Olinfo.lo CC H5Olink.lo CC H5Omessage.lo CC H5Omtime.lo CC H5Oname.lo CC H5Onull.lo CC H5Opline.lo CC H5Orefcount.lo CC H5Osdspace.lo CC H5Oshared.lo CC H5Oshmesg.lo CC H5Ostab.lo CC H5Otest.lo CC H5Ounknown.lo CC H5P.lo CC H5Pacpl.lo CC H5Pdapl.lo CC H5Pdcpl.lo CC H5Pdeprec.lo CC H5Pdxpl.lo CC H5Pencdec.lo CC H5Pfapl.lo CC H5Pfcpl.lo CC H5Pfmpl.lo CC H5Pgcpl.lo CC H5Pint.lo CC H5Plapl.lo CC H5Plcpl.lo CC H5Pocpl.lo CC H5Pocpypl.lo CC H5Pstrcpl.lo CC H5Ptest.lo CC H5PB.lo CC H5PL.lo CC H5PLint.lo CC H5PLpath.lo CC H5PLplugin_cache.lo CC H5R.lo CC H5Rint.lo CC H5Rdeprec.lo CC H5UC.lo CC H5RS.lo CC H5S.lo CC H5Sall.lo CC H5Sdbg.lo CC H5Shyper.lo CC H5Snone.lo CC H5Spoint.lo CC H5Sselect.lo CC H5Stest.lo CC H5SL.lo CC H5SM.lo CC H5SMbtree2.lo CC H5SMcache.lo CC H5SMmessage.lo CC H5SMtest.lo CC H5ST.lo CC H5T.lo CC H5Tarray.lo CC H5Tbit.lo CC H5Tcommit.lo CC H5Tcompound.lo CC H5Tconv.lo CC H5Tcset.lo CC H5Tdbg.lo CC H5Tdeprec.lo CC H5Tenum.lo CC H5Tfields.lo CC H5Tfixed.lo CC H5Tfloat.lo CC H5detect.o CCLD H5detect LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo -Wl,-O1 | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5detect > H5Tinit.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5Tinit.c ; exit 1) CC H5Tinit.lo CC H5Tnative.lo CC H5Toffset.lo CC H5Toh.lo CC H5Topaque.lo CC H5Torder.lo CC H5Tpad.lo CC H5Tprecis.lo CC H5Tstrpad.lo CC H5Tvisit.lo CC H5Tvlen.lo CC H5TS.lo CC H5VM.lo CC H5WB.lo CC H5Z.lo CC H5Zdeflate.lo CC H5Zfletcher32.lo CC H5Znbit.lo CC H5Zshuffle.lo CC H5Zscaleoffset.lo CC H5Zszip.lo CC H5Ztrans.lo CC H5FDros3.lo CC H5FDs3comms.lo CCLD libhdf5.la make[4]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src' make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src' make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++' make[4]: Entering directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++' make[4]: Nothing to be done for 'build-lib'. make[4]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++' + cd src + make lib make[4]: Entering directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src' make[5]: Entering directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src' CXX H5Exception.lo CXX H5IdComponent.lo CXX H5DataSpace.lo CXX H5PropList.lo CXX H5Library.lo CXX H5FaccProp.lo CXX H5FcreatProp.lo CXX H5LcreatProp.lo CXX H5LaccProp.lo CXX H5DaccProp.lo CXX H5DxferProp.lo CXX H5DcreatProp.lo CXX H5Location.lo CXX H5AbstractDs.lo CXX H5Attribute.lo CXX H5Object.lo CXX H5OcreatProp.lo CXX H5DataType.lo CXX H5AtomType.lo CXX H5PredType.lo CXX H5EnumType.lo CXX H5IntType.lo CXX H5FloatType.lo CXX H5StrType.lo CXX H5ArrayType.lo CXX H5VarLenType.lo CXX H5CompType.lo CXX H5DataSet.lo CXX H5CommonFG.lo CXX H5Group.lo CXX H5File.lo CXXLD libhdf5_cpp.la make[5]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src' make[4]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src' make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++' make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hl' make[4]: Entering directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hl' make[4]: Nothing to be done for 'build-lib'. make[4]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hl' + cd src + make lib make[4]: Entering directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hl/src' make[5]: Entering directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hl/src' CC H5DO.lo CC H5DS.lo CC H5IM.lo CC H5LT.lo CC H5LTanalyze.lo CC H5LTparse.lo CC H5PT.lo CC H5TB.lo CC H5LD.lo CCLD libhdf5_hl.la make[5]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hl/src' make[4]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hl/src' + cd c++ + make lib make[4]: Entering directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hl/c++' make[5]: Entering directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hl/c++' make[5]: Nothing to be done for 'build-lib'. make[5]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hl/c++' + cd src + make lib make[5]: Entering directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hl/c++/src' make[6]: Entering directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hl/c++/src' CXX H5PacketTable.lo CXXLD libhdf5_hl_cpp.la make[6]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hl/c++/src' make[5]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hl/c++/src' make[4]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hl/c++' make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/hl' make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5' mkdir -p "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/src"/*.h "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/c++/src"/*.h "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/hl/src"/*.h "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/hl/c++/src"/*.h "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" cp "hdf5/src"/libhdf5.settings "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" mkdir -p "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" cp "hdf5/src/.libs/libhdf5.a" "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" cp "hdf5/c++/src/.libs/libhdf5_cpp.a" "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" cp "hdf5/hl/src/.libs/libhdf5_hl.a" "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" cp "hdf5/hl/c++/src/.libs/libhdf5_hl_cpp.a" "/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/" clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I"/home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/include" -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Rhdf5lib.c -o Rhdf5lib.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o Rhdf5lib.so Rhdf5lib.o /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/lib/libhdf5.a -lsz -laec -lz -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-Rhdf5lib/00new/Rhdf5lib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rhdf5lib) begin installing package ‘mzR’ * installing *source* package ‘plotly’ ... ** package ‘plotly’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plotly) begin installing package ‘mixtools’ * installing *source* package ‘GenomicRanges’ ... ** package ‘GenomicRanges’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKjo9Ph/R.INSTALL27db6039760dac/GenomicRanges/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c IRanges_stubs.c -o IRanges_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c transcript_utils.c -o transcript_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o GenomicRanges.so IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKjo9Ph/R.INSTALL27db6039760dac/GenomicRanges/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-GenomicRanges/00new/GenomicRanges/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomicRanges) begin installing package ‘AnnotationFilter’ * installing *source* package ‘shiny’ ... ** package ‘shiny’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny) * installing *source* package ‘SparseArray’ ... ** package ‘SparseArray’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQuKVBD/R.INSTALL27dc2314f1b162/SparseArray/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c ExtendableJaggedArray.c -o ExtendableJaggedArray.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c IRanges_stubs.c -o IRanges_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c OPBufTree.c -o OPBufTree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c R_init_SparseArray.c -o R_init_SparseArray.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c Rvector_summarization.c -o Rvector_summarization.o Rvector_summarization.c:1360:12: warning: unused function 'any_NA_list_elt' [-Wunused-function] 1360 | static int any_NA_list_elt(SEXP x) | ^~~~~~~~~~~~~~~ Rvector_summarization.c:1370:12: warning: unused function 'count_NA_list_elts' [-Wunused-function] 1370 | static int count_NA_list_elts(SEXP x) | ^~~~~~~~~~~~~~~~~~ 2 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c Rvector_utils.c -o Rvector_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SBT_utils.c -o SBT_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SVT_SparseArray_class.c -o SVT_SparseArray_class.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_Arith_methods.c -o SparseArray_Arith_methods.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_Compare_methods.c -o SparseArray_Compare_methods.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_Complex_methods.c -o SparseArray_Complex_methods.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_Logic_methods.c -o SparseArray_Logic_methods.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_Math_methods.c -o SparseArray_Math_methods.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_abind.c -o SparseArray_abind.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_aperm.c -o SparseArray_aperm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_dim_tuning.c -o SparseArray_dim_tuning.o SparseArray_dim_tuning.c:141:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] 141 | static SEXP make_scalar_lacunar_leaf() | ^ | void 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_matrixStats.c -o SparseArray_matrixStats.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_misc_methods.c -o SparseArray_misc_methods.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_subassignment.c -o SparseArray_subassignment.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_subassignment_OLD.c -o SparseArray_subassignment_OLD.o SparseArray_subassignment_OLD.c:245:19: warning: unused function 'descend_to_bottom_by_coords0' [-Wunused-function] 245 | static inline int descend_to_bottom_by_coords0(SEXP SVT, SEXP SVT0, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_subsetting.c -o SparseArray_subsetting.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseArray_summarization.c -o SparseArray_summarization.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseMatrix_mult.c -o SparseMatrix_mult.o SparseMatrix_mult.c:306:13: warning: unused function 'crossprod2_doubleSV_doublemat' [-Wunused-function] 306 | static void crossprod2_doubleSV_doublemat( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SparseMatrix_mult.c:346:13: warning: unused function 'crossprod2_doublemat_doubleSV' [-Wunused-function] 346 | static void crossprod2_doublemat_doubleSV( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseVec.c -o SparseVec.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseVec_Arith.c -o SparseVec_Arith.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseVec_Compare.c -o SparseVec_Compare.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseVec_Logic.c -o SparseVec_Logic.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseVec_Math.c -o SparseVec_Math.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c SparseVec_dotprod.c -o SparseVec_dotprod.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c XVector_stubs.c -o XVector_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c argcheck_utils.c -o argcheck_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c coerceVector2.c -o coerceVector2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c leaf_utils.c -o leaf_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c randomSparseArray.c -o randomSparseArray.o randomSparseArray.c:42:19: warning: unused function 'binary_find_interval' [-Wunused-function] 42 | static inline int binary_find_interval(double u, | ^~~~~~~~~~~~~~~~~~~~ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c readSparseCSV.c -o readSparseCSV.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c rowsum_methods.c -o rowsum_methods.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c sparseMatrix_utils.c -o sparseMatrix_utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c test.c -o test.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/IRanges/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/XVector/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c thread_control.c -o thread_control.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o SparseArray.so ExtendableJaggedArray.o IRanges_stubs.o OPBufTree.o R_init_SparseArray.o Rvector_summarization.o Rvector_utils.o S4Vectors_stubs.o SBT_utils.o SVT_SparseArray_class.o SparseArray_Arith_methods.o SparseArray_Compare_methods.o SparseArray_Complex_methods.o SparseArray_Logic_methods.o SparseArray_Math_methods.o SparseArray_abind.o SparseArray_aperm.o SparseArray_dim_tuning.o SparseArray_matrixStats.o SparseArray_misc_methods.o SparseArray_subassignment.o SparseArray_subassignment_OLD.o SparseArray_subsetting.o SparseArray_summarization.o SparseMatrix_mult.o SparseVec.o SparseVec_Arith.o SparseVec_Compare.o SparseVec_Logic.o SparseVec_Math.o SparseVec_dotprod.o XVector_stubs.o argcheck_utils.o coerceVector2.o leaf_utils.o randomSparseArray.o readSparseCSV.o rowsum_methods.o sparseMatrix_utils.o test.o thread_control.o -fopenmp -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQuKVBD/R.INSTALL27dc2314f1b162/SparseArray/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-SparseArray/00new/SparseArray/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SparseArray) begin installing package ‘DelayedArray’ * installing *source* package ‘AnnotationFilter’ ... ** package ‘AnnotationFilter’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AnnotationFilter) * installing *source* package ‘mixtools’ ... ** package ‘mixtools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPeHnhL/R.INSTALL27e326283028fa/mixtools/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KDEloc2.c -o KDEloc2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KDElocscale.c -o KDElocscale.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KDErepeated.c -o KDErepeated.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KDErepeatedbw.c -o KDErepeatedbw.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KDEsymloc.c -o KDEsymloc.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KDEsymloc1comp.c -o KDEsymloc1comp.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c KDEsymloc2.c -o KDEsymloc2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c multinompost.c -o multinompost.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mvwkde.c -o mvwkde.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c new_svalues.c -o new_svalues.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c normpost.c -o normpost.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c npMSL.c -o npMSL.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sd.c -o sd.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c z.c -o z.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o mixtools.so KDEloc2.o KDElocscale.o KDErepeated.o KDErepeatedbw.o KDEsymloc.o KDEsymloc1comp.o KDEsymloc2.o init.o multinompost.o mvwkde.o new_svalues.o normpost.o npMSL.o sd.o z.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPeHnhL/R.INSTALL27e326283028fa/mixtools/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-mixtools/00new/mixtools/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mixtools) * installing *source* package ‘igraph’ ... ** package ‘igraph’ successfully unpacked and MD5 sums checked ** using staged installation libxml2 include directories: -I/usr/include/libxml2 libxml2 library link flags: -lxml2 Using installed GLPK ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoQlqyT/R.INSTALL27bb64728e0ee4/igraph/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c cpp11.cpp -o cpp11.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c cpprinterface.cpp -o cpprinterface.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c init.cpp -o init.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rinterface.c -o rinterface.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rinterface_extra.c -o rinterface_extra.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rrandom.c -o rrandom.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c simpleraytracer.cpp -o simpleraytracer.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dgetv0.f -o vendor/arpack/dgetv0.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dlaqrb.f -o vendor/arpack/dlaqrb.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dmout.f -o vendor/arpack/dmout.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dnaitr.f -o vendor/arpack/dnaitr.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dnapps.f -o vendor/arpack/dnapps.o ./vendor/arpack/dnapps.f:342:19: warning: Reference to the procedure 'igraphdvout' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes call igraphdvout (logfil, 1, h(i+1,i), ndigit, ^ ./vendor/arpack/dnapps.f:271:13: previous reference to 'igraphdvout' call igraphdvout (logfil, 1, [sigmar], ndigit, ^ ./vendor/arpack/dnapps.f:593:10: warning: Reference to the procedure 'dgemv' has an implicit interface that is distinct from another reference: incompatible dummy argument #10: incompatible dummy data object shapes call dgemv ('N', n, kplusp-i+1, one, v, ldv, ^ ./vendor/arpack/dnapps.f:584:11: previous reference to 'dgemv' & call dgemv ('N', n, kplusp, one, v, ldv, q(1,kev+1), 1, zero, ^ ./vendor/arpack/dnapps.f:624:10: warning: Reference to the procedure 'igraphdvout' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes call igraphdvout (logfil, 1, q(kplusp,kev), ndigit, ^ ./vendor/arpack/dnapps.f:271:13: previous reference to 'igraphdvout' call igraphdvout (logfil, 1, [sigmar], ndigit, ^ ./vendor/arpack/dnapps.f:626:10: warning: Reference to the procedure 'igraphdvout' has an implicit interface that is distinct from another reference: incompatible dummy argument #3: incompatible dummy data object shapes call igraphdvout (logfil, 1, h(kev+1,kev), ndigit, ^ ./vendor/arpack/dnapps.f:271:13: previous reference to 'igraphdvout' call igraphdvout (logfil, 1, [sigmar], ndigit, ^ flang-new-19 -fpic -g -O2 -c vendor/arpack/dnaup2.f -o vendor/arpack/dnaup2.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dnaupd.f -o vendor/arpack/dnaupd.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dnconv.f -o vendor/arpack/dnconv.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dneigh.f -o vendor/arpack/dneigh.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dneupd.f -o vendor/arpack/dneupd.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dngets.f -o vendor/arpack/dngets.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsaitr.f -o vendor/arpack/dsaitr.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsapps.f -o vendor/arpack/dsapps.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsaup2.f -o vendor/arpack/dsaup2.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsaupd.f -o vendor/arpack/dsaupd.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsconv.f -o vendor/arpack/dsconv.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dseigt.f -o vendor/arpack/dseigt.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsesrt.f -o vendor/arpack/dsesrt.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dseupd.f -o vendor/arpack/dseupd.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsgets.f -o vendor/arpack/dsgets.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsortc.f -o vendor/arpack/dsortc.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dsortr.f -o vendor/arpack/dsortr.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dstatn.f -o vendor/arpack/dstatn.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dstats.f -o vendor/arpack/dstats.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dstqrb.f -o vendor/arpack/dstqrb.o flang-new-19 -fpic -g -O2 -c vendor/arpack/dvout.f -o vendor/arpack/dvout.o flang-new-19 -fpic -g -O2 -c vendor/arpack/ivout.f -o vendor/arpack/ivout.o flang-new-19 -fpic -g -O2 -c vendor/arpack/second.f -o vendor/arpack/second.o flang-new-19 -fpic -g -O2 -c vendor/arpack/wrap.f -o vendor/arpack/wrap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/betweenness.c -o vendor/cigraph/src/centrality/betweenness.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/centrality_other.c -o vendor/cigraph/src/centrality/centrality_other.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/centralization.c -o vendor/cigraph/src/centrality/centralization.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/closeness.c -o vendor/cigraph/src/centrality/closeness.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/coreness.c -o vendor/cigraph/src/centrality/coreness.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/eigenvector.c -o vendor/cigraph/src/centrality/eigenvector.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/hub_authority.c -o vendor/cigraph/src/centrality/hub_authority.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/centrality/pagerank.c -o vendor/cigraph/src/centrality/pagerank.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack.cpp -o vendor/cigraph/src/centrality/prpack.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_base_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_base_graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_igraph_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_igraph_graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_preprocessed_ge_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_ge_graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_preprocessed_gs_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_gs_graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_preprocessed_scc_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_scc_graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_preprocessed_schur_graph.cpp -o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_schur_graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_result.cpp -o vendor/cigraph/src/centrality/prpack/prpack_result.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_solver.cpp -o vendor/cigraph/src/centrality/prpack/prpack_solver.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/prpack/prpack_utils.cpp -o vendor/cigraph/src/centrality/prpack/prpack_utils.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/centrality/truss.cpp -o vendor/cigraph/src/centrality/truss.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/cliquer/cliquer.c -o vendor/cigraph/src/cliques/cliquer/cliquer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/cliquer/cliquer_graph.c -o vendor/cigraph/src/cliques/cliquer/cliquer_graph.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/cliquer/reorder.c -o vendor/cigraph/src/cliques/cliquer/reorder.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/cliquer_wrapper.c -o vendor/cigraph/src/cliques/cliquer_wrapper.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/cliques.c -o vendor/cigraph/src/cliques/cliques.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/glet.c -o vendor/cigraph/src/cliques/glet.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/cliques/maximal_cliques.c -o vendor/cigraph/src/cliques/maximal_cliques.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/community_misc.c -o vendor/cigraph/src/community/community_misc.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/edge_betweenness.c -o vendor/cigraph/src/community/edge_betweenness.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/fast_modularity.c -o vendor/cigraph/src/community/fast_modularity.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/fluid.c -o vendor/cigraph/src/community/fluid.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/infomap/infomap.cc -o vendor/cigraph/src/community/infomap/infomap.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/infomap/infomap_FlowGraph.cc -o vendor/cigraph/src/community/infomap/infomap_FlowGraph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/infomap/infomap_Greedy.cc -o vendor/cigraph/src/community/infomap/infomap_Greedy.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/label_propagation.c -o vendor/cigraph/src/community/label_propagation.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/leading_eigenvector.c -o vendor/cigraph/src/community/leading_eigenvector.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/leiden.c -o vendor/cigraph/src/community/leiden.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/louvain.c -o vendor/cigraph/src/community/louvain.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/modularity.c -o vendor/cigraph/src/community/modularity.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/optimal_modularity.c -o vendor/cigraph/src/community/optimal_modularity.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/spinglass/NetDataTypes.cpp -o vendor/cigraph/src/community/spinglass/NetDataTypes.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/spinglass/NetRoutines.cpp -o vendor/cigraph/src/community/spinglass/NetRoutines.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/spinglass/clustertool.cpp -o vendor/cigraph/src/community/spinglass/clustertool.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/spinglass/pottsmodel_2.cpp -o vendor/cigraph/src/community/spinglass/pottsmodel_2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/community/voronoi.c -o vendor/cigraph/src/community/voronoi.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/walktrap/walktrap.cpp -o vendor/cigraph/src/community/walktrap/walktrap.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/walktrap/walktrap_communities.cpp -o vendor/cigraph/src/community/walktrap/walktrap_communities.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/walktrap/walktrap_graph.cpp -o vendor/cigraph/src/community/walktrap/walktrap_graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/community/walktrap/walktrap_heap.cpp -o vendor/cigraph/src/community/walktrap/walktrap_heap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/connectivity/cohesive_blocks.c -o vendor/cigraph/src/connectivity/cohesive_blocks.o vendor/cigraph/src/connectivity/cohesive_blocks.c:300:30: warning: variable 'kept' set but not used [-Wunused-but-set-variable] 300 | igraph_integer_t no, kept = 0; | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/connectivity/components.c -o vendor/cigraph/src/connectivity/components.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/connectivity/reachability.c -o vendor/cigraph/src/connectivity/reachability.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/connectivity/separators.c -o vendor/cigraph/src/connectivity/separators.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/adjacency.c -o vendor/cigraph/src/constructors/adjacency.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/atlas.c -o vendor/cigraph/src/constructors/atlas.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/basic_constructors.c -o vendor/cigraph/src/constructors/basic_constructors.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/circulant.c -o vendor/cigraph/src/constructors/circulant.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/de_bruijn.c -o vendor/cigraph/src/constructors/de_bruijn.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/famous.c -o vendor/cigraph/src/constructors/famous.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/full.c -o vendor/cigraph/src/constructors/full.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/generalized_petersen.c -o vendor/cigraph/src/constructors/generalized_petersen.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/kautz.c -o vendor/cigraph/src/constructors/kautz.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/lattices.c -o vendor/cigraph/src/constructors/lattices.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/lcf.c -o vendor/cigraph/src/constructors/lcf.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/linegraph.c -o vendor/cigraph/src/constructors/linegraph.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/prufer.c -o vendor/cigraph/src/constructors/prufer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/regular.c -o vendor/cigraph/src/constructors/regular.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/constructors/trees.c -o vendor/cigraph/src/constructors/trees.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/array.c -o vendor/cigraph/src/core/array.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/bitset.c -o vendor/cigraph/src/core/bitset.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/bitset_list.c -o vendor/cigraph/src/core/bitset_list.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/buckets.c -o vendor/cigraph/src/core/buckets.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/cutheap.c -o vendor/cigraph/src/core/cutheap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/dqueue.c -o vendor/cigraph/src/core/dqueue.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/error.c -o vendor/cigraph/src/core/error.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/estack.c -o vendor/cigraph/src/core/estack.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/fixed_vectorlist.c -o vendor/cigraph/src/core/fixed_vectorlist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/genheap.c -o vendor/cigraph/src/core/genheap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/grid.c -o vendor/cigraph/src/core/grid.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/heap.c -o vendor/cigraph/src/core/heap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/indheap.c -o vendor/cigraph/src/core/indheap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/interruption.c -o vendor/cigraph/src/core/interruption.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/marked_queue.c -o vendor/cigraph/src/core/marked_queue.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/matrix.c -o vendor/cigraph/src/core/matrix.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/matrix_list.c -o vendor/cigraph/src/core/matrix_list.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/memory.c -o vendor/cigraph/src/core/memory.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/printing.c -o vendor/cigraph/src/core/printing.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/progress.c -o vendor/cigraph/src/core/progress.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/psumtree.c -o vendor/cigraph/src/core/psumtree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/set.c -o vendor/cigraph/src/core/set.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/sparsemat.c -o vendor/cigraph/src/core/sparsemat.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/stack.c -o vendor/cigraph/src/core/stack.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/statusbar.c -o vendor/cigraph/src/core/statusbar.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/strvector.c -o vendor/cigraph/src/core/strvector.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/trie.c -o vendor/cigraph/src/core/trie.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/vector.c -o vendor/cigraph/src/core/vector.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/vector_list.c -o vendor/cigraph/src/core/vector_list.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/core/vector_ptr.c -o vendor/cigraph/src/core/vector_ptr.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/flow/flow.c -o vendor/cigraph/src/flow/flow.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/flow/flow_conversion.c -o vendor/cigraph/src/flow/flow_conversion.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/flow/st-cuts.c -o vendor/cigraph/src/flow/st-cuts.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/barabasi.c -o vendor/cigraph/src/games/barabasi.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/callaway_traits.c -o vendor/cigraph/src/games/callaway_traits.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/chung_lu.c -o vendor/cigraph/src/games/chung_lu.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/citations.c -o vendor/cigraph/src/games/citations.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/correlated.c -o vendor/cigraph/src/games/correlated.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/degree_sequence.c -o vendor/cigraph/src/games/degree_sequence.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/games/degree_sequence_vl/gengraph_degree_sequence.cpp -o vendor/cigraph/src/games/degree_sequence_vl/gengraph_degree_sequence.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp -o vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp:271:19: warning: variable 'cost' set but not used [-Wunused-but-set-variable] 271 | unsigned long cost = 0; | ^ vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp:290:12: warning: variable 'avg_K' set but not used [-Wunused-but-set-variable] 290 | double avg_K = 0; | ^ vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.cpp:291:12: warning: variable 'avg_T' set but not used [-Wunused-but-set-variable] 291 | double avg_T = 0; | ^ 3 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_optimized.cpp -o vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_optimized.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/games/degree_sequence_vl/gengraph_mr-connected.cpp -o vendor/cigraph/src/games/degree_sequence_vl/gengraph_mr-connected.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/games/degree_sequence_vl/gengraph_random.cpp -o vendor/cigraph/src/games/degree_sequence_vl/gengraph_random.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/dotproduct.c -o vendor/cigraph/src/games/dotproduct.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/erdos_renyi.c -o vendor/cigraph/src/games/erdos_renyi.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/establishment.c -o vendor/cigraph/src/games/establishment.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/forestfire.c -o vendor/cigraph/src/games/forestfire.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/grg.c -o vendor/cigraph/src/games/grg.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/growing_random.c -o vendor/cigraph/src/games/growing_random.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/islands.c -o vendor/cigraph/src/games/islands.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/k_regular.c -o vendor/cigraph/src/games/k_regular.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/preference.c -o vendor/cigraph/src/games/preference.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/recent_degree.c -o vendor/cigraph/src/games/recent_degree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/sbm.c -o vendor/cigraph/src/games/sbm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/static_fitness.c -o vendor/cigraph/src/games/static_fitness.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/tree.c -o vendor/cigraph/src/games/tree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/games/watts_strogatz.c -o vendor/cigraph/src/games/watts_strogatz.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/adjlist.c -o vendor/cigraph/src/graph/adjlist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/attributes.c -o vendor/cigraph/src/graph/attributes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/basic_query.c -o vendor/cigraph/src/graph/basic_query.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/caching.c -o vendor/cigraph/src/graph/caching.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/cattributes.c -o vendor/cigraph/src/graph/cattributes.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/graph_list.c -o vendor/cigraph/src/graph/graph_list.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/iterators.c -o vendor/cigraph/src/graph/iterators.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/type_common.c -o vendor/cigraph/src/graph/type_common.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/type_indexededgelist.c -o vendor/cigraph/src/graph/type_indexededgelist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/graph/visitors.c -o vendor/cigraph/src/graph/visitors.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/hrg/hrg.cc -o vendor/cigraph/src/hrg/hrg.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/hrg/hrg_types.cc -o vendor/cigraph/src/hrg/hrg_types.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/glpk_support.c -o vendor/cigraph/src/internal/glpk_support.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/hacks.c -o vendor/cigraph/src/internal/hacks.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/lsap.c -o vendor/cigraph/src/internal/lsap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/qsort.c -o vendor/cigraph/src/internal/qsort.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/qsort_r.c -o vendor/cigraph/src/internal/qsort_r.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/utils.c -o vendor/cigraph/src/internal/utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/internal/zeroin.c -o vendor/cigraph/src/internal/zeroin.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/dimacs.c -o vendor/cigraph/src/io/dimacs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/dl.c -o vendor/cigraph/src/io/dl.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/dot.c -o vendor/cigraph/src/io/dot.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/edgelist.c -o vendor/cigraph/src/io/edgelist.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/gml-tree.c -o vendor/cigraph/src/io/gml-tree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/gml.c -o vendor/cigraph/src/io/gml.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/graphdb.c -o vendor/cigraph/src/io/graphdb.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/graphml.c -o vendor/cigraph/src/io/graphml.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/leda.c -o vendor/cigraph/src/io/leda.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/lgl.c -o vendor/cigraph/src/io/lgl.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/ncol.c -o vendor/cigraph/src/io/ncol.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/pajek.c -o vendor/cigraph/src/io/pajek.o vendor/cigraph/src/io/pajek.c:524:22: warning: variable 'notop' set but not used [-Wunused-but-set-variable] 524 | igraph_integer_t notop = 0, nobottom = 0; | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/io/parse_utils.c -o vendor/cigraph/src/io/parse_utils.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/isomorphism/bliss.cc -o vendor/cigraph/src/isomorphism/bliss.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/isomorphism/bliss/defs.cc -o vendor/cigraph/src/isomorphism/bliss/defs.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/isomorphism/bliss/graph.cc -o vendor/cigraph/src/isomorphism/bliss/graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/isomorphism/bliss/heap.cc -o vendor/cigraph/src/isomorphism/bliss/heap.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/isomorphism/bliss/orbit.cc -o vendor/cigraph/src/isomorphism/bliss/orbit.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/isomorphism/bliss/partition.cc -o vendor/cigraph/src/isomorphism/bliss/partition.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/isomorphism/bliss/uintseqhash.cc -o vendor/cigraph/src/isomorphism/bliss/uintseqhash.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/isomorphism/bliss/utils.cc -o vendor/cigraph/src/isomorphism/bliss/utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/isoclasses.c -o vendor/cigraph/src/isomorphism/isoclasses.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/isomorphism_misc.c -o vendor/cigraph/src/isomorphism/isomorphism_misc.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/lad.c -o vendor/cigraph/src/isomorphism/lad.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/queries.c -o vendor/cigraph/src/isomorphism/queries.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/isomorphism/vf2.c -o vendor/cigraph/src/isomorphism/vf2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/circular.c -o vendor/cigraph/src/layout/circular.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/davidson_harel.c -o vendor/cigraph/src/layout/davidson_harel.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/layout/drl/DensityGrid.cpp -o vendor/cigraph/src/layout/drl/DensityGrid.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/layout/drl/DensityGrid_3d.cpp -o vendor/cigraph/src/layout/drl/DensityGrid_3d.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/layout/drl/drl_graph.cpp -o vendor/cigraph/src/layout/drl/drl_graph.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/layout/drl/drl_graph_3d.cpp -o vendor/cigraph/src/layout/drl/drl_graph_3d.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/layout/drl/drl_layout.cpp -o vendor/cigraph/src/layout/drl/drl_layout.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/layout/drl/drl_layout_3d.cpp -o vendor/cigraph/src/layout/drl/drl_layout_3d.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/layout/drl/drl_parse.cpp -o vendor/cigraph/src/layout/drl/drl_parse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/fruchterman_reingold.c -o vendor/cigraph/src/layout/fruchterman_reingold.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/gem.c -o vendor/cigraph/src/layout/gem.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/graphopt.c -o vendor/cigraph/src/layout/graphopt.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/kamada_kawai.c -o vendor/cigraph/src/layout/kamada_kawai.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/large_graph.c -o vendor/cigraph/src/layout/large_graph.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/layout_bipartite.c -o vendor/cigraph/src/layout/layout_bipartite.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/layout_grid.c -o vendor/cigraph/src/layout/layout_grid.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/layout_random.c -o vendor/cigraph/src/layout/layout_random.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/mds.c -o vendor/cigraph/src/layout/mds.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/merge_dla.c -o vendor/cigraph/src/layout/merge_dla.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/merge_grid.c -o vendor/cigraph/src/layout/merge_grid.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/reingold_tilford.c -o vendor/cigraph/src/layout/reingold_tilford.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/sugiyama.c -o vendor/cigraph/src/layout/sugiyama.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/layout/umap.c -o vendor/cigraph/src/layout/umap.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/linalg/arpack.c -o vendor/cigraph/src/linalg/arpack.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/linalg/blas.c -o vendor/cigraph/src/linalg/blas.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/linalg/eigen.c -o vendor/cigraph/src/linalg/eigen.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/linalg/lapack.c -o vendor/cigraph/src/linalg/lapack.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/math/complex.c -o vendor/cigraph/src/math/complex.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/math/safe_intop.c -o vendor/cigraph/src/math/safe_intop.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/math/utils.c -o vendor/cigraph/src/math/utils.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/bipartite.c -o vendor/cigraph/src/misc/bipartite.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/chordality.c -o vendor/cigraph/src/misc/chordality.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/cocitation.c -o vendor/cigraph/src/misc/cocitation.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/coloring.c -o vendor/cigraph/src/misc/coloring.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/conversion.c -o vendor/cigraph/src/misc/conversion.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/cycle_bases.c -o vendor/cigraph/src/misc/cycle_bases.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/misc/degree_sequence.cpp -o vendor/cigraph/src/misc/degree_sequence.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/embedding.c -o vendor/cigraph/src/misc/embedding.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/feedback_arc_set.c -o vendor/cigraph/src/misc/feedback_arc_set.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/graphicality.c -o vendor/cigraph/src/misc/graphicality.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/matching.c -o vendor/cigraph/src/misc/matching.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/microscopic_update.c -o vendor/cigraph/src/misc/microscopic_update.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/mixing.c -o vendor/cigraph/src/misc/mixing.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/motifs.c -o vendor/cigraph/src/misc/motifs.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/cigraph/src/misc/order_cycle.cpp -o vendor/cigraph/src/misc/order_cycle.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/other.c -o vendor/cigraph/src/misc/other.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/power_law_fit.c -o vendor/cigraph/src/misc/power_law_fit.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/scan.c -o vendor/cigraph/src/misc/scan.o vendor/cigraph/src/misc/scan.c:76:23: warning: unused function 'igraph_i_trans4_il_simplify' [-Wunused-function] 76 | static igraph_error_t igraph_i_trans4_il_simplify(const igraph_t *graph, igraph_inclist_t *il, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/sir.c -o vendor/cigraph/src/misc/sir.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/misc/spanning_trees.c -o vendor/cigraph/src/misc/spanning_trees.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/add_edge.c -o vendor/cigraph/src/operators/add_edge.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/complementer.c -o vendor/cigraph/src/operators/complementer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/compose.c -o vendor/cigraph/src/operators/compose.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/connect_neighborhood.c -o vendor/cigraph/src/operators/connect_neighborhood.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/contract.c -o vendor/cigraph/src/operators/contract.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/difference.c -o vendor/cigraph/src/operators/difference.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/disjoint_union.c -o vendor/cigraph/src/operators/disjoint_union.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/intersection.c -o vendor/cigraph/src/operators/intersection.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/join.c -o vendor/cigraph/src/operators/join.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/misc_internal.c -o vendor/cigraph/src/operators/misc_internal.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/permute.c -o vendor/cigraph/src/operators/permute.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/reverse.c -o vendor/cigraph/src/operators/reverse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/rewire.c -o vendor/cigraph/src/operators/rewire.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/rewire_edges.c -o vendor/cigraph/src/operators/rewire_edges.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/simplify.c -o vendor/cigraph/src/operators/simplify.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/subgraph.c -o vendor/cigraph/src/operators/subgraph.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/operators/union.c -o vendor/cigraph/src/operators/union.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/all_shortest_paths.c -o vendor/cigraph/src/paths/all_shortest_paths.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/astar.c -o vendor/cigraph/src/paths/astar.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/bellman_ford.c -o vendor/cigraph/src/paths/bellman_ford.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/dijkstra.c -o vendor/cigraph/src/paths/dijkstra.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/distances.c -o vendor/cigraph/src/paths/distances.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/eulerian.c -o vendor/cigraph/src/paths/eulerian.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/floyd_warshall.c -o vendor/cigraph/src/paths/floyd_warshall.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/histogram.c -o vendor/cigraph/src/paths/histogram.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/johnson.c -o vendor/cigraph/src/paths/johnson.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/random_walk.c -o vendor/cigraph/src/paths/random_walk.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/shortest_paths.c -o vendor/cigraph/src/paths/shortest_paths.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/simple_paths.c -o vendor/cigraph/src/paths/simple_paths.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/sparsifier.c -o vendor/cigraph/src/paths/sparsifier.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/unweighted.c -o vendor/cigraph/src/paths/unweighted.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/voronoi.c -o vendor/cigraph/src/paths/voronoi.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/paths/widest_paths.c -o vendor/cigraph/src/paths/widest_paths.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/basic_properties.c -o vendor/cigraph/src/properties/basic_properties.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/complete.c -o vendor/cigraph/src/properties/complete.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/constraint.c -o vendor/cigraph/src/properties/constraint.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/convergence_degree.c -o vendor/cigraph/src/properties/convergence_degree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/dag.c -o vendor/cigraph/src/properties/dag.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/degrees.c -o vendor/cigraph/src/properties/degrees.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/ecc.c -o vendor/cigraph/src/properties/ecc.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/girth.c -o vendor/cigraph/src/properties/girth.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/loops.c -o vendor/cigraph/src/properties/loops.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/multiplicity.c -o vendor/cigraph/src/properties/multiplicity.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/neighborhood.c -o vendor/cigraph/src/properties/neighborhood.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/perfect.c -o vendor/cigraph/src/properties/perfect.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/spectral.c -o vendor/cigraph/src/properties/spectral.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/trees.c -o vendor/cigraph/src/properties/trees.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/properties/triangles.c -o vendor/cigraph/src/properties/triangles.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/random/random.c -o vendor/cigraph/src/random/random.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/random/rng_glibc2.c -o vendor/cigraph/src/random/rng_glibc2.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/random/rng_mt19937.c -o vendor/cigraph/src/random/rng_mt19937.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/random/rng_pcg32.c -o vendor/cigraph/src/random/rng_pcg32.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/random/rng_pcg64.c -o vendor/cigraph/src/random/rng_pcg64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/src/version.c -o vendor/cigraph/src/version.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_add.c -o vendor/cigraph/vendor/cs/cs_add.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_amd.c -o vendor/cigraph/vendor/cs/cs_amd.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_chol.c -o vendor/cigraph/vendor/cs/cs_chol.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_cholsol.c -o vendor/cigraph/vendor/cs/cs_cholsol.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_compress.c -o vendor/cigraph/vendor/cs/cs_compress.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_counts.c -o vendor/cigraph/vendor/cs/cs_counts.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_cumsum.c -o vendor/cigraph/vendor/cs/cs_cumsum.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_dfs.c -o vendor/cigraph/vendor/cs/cs_dfs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_dmperm.c -o vendor/cigraph/vendor/cs/cs_dmperm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_droptol.c -o vendor/cigraph/vendor/cs/cs_droptol.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_dropzeros.c -o vendor/cigraph/vendor/cs/cs_dropzeros.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_dupl.c -o vendor/cigraph/vendor/cs/cs_dupl.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_entry.c -o vendor/cigraph/vendor/cs/cs_entry.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_ereach.c -o vendor/cigraph/vendor/cs/cs_ereach.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_etree.c -o vendor/cigraph/vendor/cs/cs_etree.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_fkeep.c -o vendor/cigraph/vendor/cs/cs_fkeep.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_gaxpy.c -o vendor/cigraph/vendor/cs/cs_gaxpy.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_happly.c -o vendor/cigraph/vendor/cs/cs_happly.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_house.c -o vendor/cigraph/vendor/cs/cs_house.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_ipvec.c -o vendor/cigraph/vendor/cs/cs_ipvec.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_leaf.c -o vendor/cigraph/vendor/cs/cs_leaf.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_load.c -o vendor/cigraph/vendor/cs/cs_load.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_lsolve.c -o vendor/cigraph/vendor/cs/cs_lsolve.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_ltsolve.c -o vendor/cigraph/vendor/cs/cs_ltsolve.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_lu.c -o vendor/cigraph/vendor/cs/cs_lu.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_lusol.c -o vendor/cigraph/vendor/cs/cs_lusol.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_malloc.c -o vendor/cigraph/vendor/cs/cs_malloc.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_maxtrans.c -o vendor/cigraph/vendor/cs/cs_maxtrans.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_multiply.c -o vendor/cigraph/vendor/cs/cs_multiply.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_norm.c -o vendor/cigraph/vendor/cs/cs_norm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_permute.c -o vendor/cigraph/vendor/cs/cs_permute.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_pinv.c -o vendor/cigraph/vendor/cs/cs_pinv.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_post.c -o vendor/cigraph/vendor/cs/cs_post.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_print.c -o vendor/cigraph/vendor/cs/cs_print.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_pvec.c -o vendor/cigraph/vendor/cs/cs_pvec.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_qr.c -o vendor/cigraph/vendor/cs/cs_qr.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_qrsol.c -o vendor/cigraph/vendor/cs/cs_qrsol.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_randperm.c -o vendor/cigraph/vendor/cs/cs_randperm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_reach.c -o vendor/cigraph/vendor/cs/cs_reach.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_scatter.c -o vendor/cigraph/vendor/cs/cs_scatter.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_scc.c -o vendor/cigraph/vendor/cs/cs_scc.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_schol.c -o vendor/cigraph/vendor/cs/cs_schol.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_spsolve.c -o vendor/cigraph/vendor/cs/cs_spsolve.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_sqr.c -o vendor/cigraph/vendor/cs/cs_sqr.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_symperm.c -o vendor/cigraph/vendor/cs/cs_symperm.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_tdfs.c -o vendor/cigraph/vendor/cs/cs_tdfs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_transpose.c -o vendor/cigraph/vendor/cs/cs_transpose.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_updown.c -o vendor/cigraph/vendor/cs/cs_updown.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_usolve.c -o vendor/cigraph/vendor/cs/cs_usolve.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_util.c -o vendor/cigraph/vendor/cs/cs_util.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/cs/cs_utsolve.c -o vendor/cigraph/vendor/cs/cs_utsolve.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-advance-128.c -o vendor/cigraph/vendor/pcg/pcg-advance-128.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-advance-64.c -o vendor/cigraph/vendor/pcg/pcg-advance-64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-output-128.c -o vendor/cigraph/vendor/pcg/pcg-output-128.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-output-32.c -o vendor/cigraph/vendor/pcg/pcg-output-32.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-output-64.c -o vendor/cigraph/vendor/pcg/pcg-output-64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-rngs-128.c -o vendor/cigraph/vendor/pcg/pcg-rngs-128.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/pcg/pcg-rngs-64.c -o vendor/cigraph/vendor/pcg/pcg-rngs-64.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/gss.c -o vendor/cigraph/vendor/plfit/gss.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/hzeta.c -o vendor/cigraph/vendor/plfit/hzeta.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/kolmogorov.c -o vendor/cigraph/vendor/plfit/kolmogorov.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/lbfgs.c -o vendor/cigraph/vendor/plfit/lbfgs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/mt.c -o vendor/cigraph/vendor/plfit/mt.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/options.c -o vendor/cigraph/vendor/plfit/options.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/platform.c -o vendor/cigraph/vendor/plfit/platform.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/plfit.c -o vendor/cigraph/vendor/plfit/plfit.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/plfit_error.c -o vendor/cigraph/vendor/plfit/plfit_error.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/rbinom.c -o vendor/cigraph/vendor/plfit/rbinom.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/plfit/sampling.c -o vendor/cigraph/vendor/plfit/sampling.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/dl-lexer.c -o vendor/io/dl-lexer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/dl-parser.c -o vendor/io/dl-parser.o src/vendor/io/dl-parser.c:1376:9: warning: variable 'igraph_dl_yynerrs' set but not used [-Wunused-but-set-variable] 1376 | int yynerrs = 0; | ^ vendor/io/dl-parser.c:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs igraph_dl_yynerrs | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/gml-lexer.c -o vendor/io/gml-lexer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/gml-parser.c -o vendor/io/gml-parser.o src/vendor/io/gml-parser.c:1294:9: warning: variable 'igraph_gml_yynerrs' set but not used [-Wunused-but-set-variable] 1294 | int yynerrs = 0; | ^ vendor/io/gml-parser.c:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs igraph_gml_yynerrs | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/lgl-lexer.c -o vendor/io/lgl-lexer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/lgl-parser.c -o vendor/io/lgl-parser.o src/vendor/io/lgl-parser.c:1246:9: warning: variable 'igraph_lgl_yynerrs' set but not used [-Wunused-but-set-variable] 1246 | int yynerrs = 0; | ^ vendor/io/lgl-parser.c:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs igraph_lgl_yynerrs | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/ncol-lexer.c -o vendor/io/ncol-lexer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/ncol-parser.c -o vendor/io/ncol-parser.o src/vendor/io/ncol-parser.c:1239:9: warning: variable 'igraph_ncol_yynerrs' set but not used [-Wunused-but-set-variable] 1239 | int yynerrs = 0; | ^ vendor/io/ncol-parser.c:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs igraph_ncol_yynerrs | ^ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/pajek-lexer.c -o vendor/io/pajek-lexer.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/io/pajek-parser.c -o vendor/io/pajek-parser.o src/vendor/io/pajek-parser.c:1531:9: warning: variable 'igraph_pajek_yynerrs' set but not used [-Wunused-but-set-variable] 1531 | int yynerrs = 0; | ^ vendor/io/pajek-parser.c:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs igraph_pajek_yynerrs | ^ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/Color.cpp -o vendor/simpleraytracer/Color.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/Light.cpp -o vendor/simpleraytracer/Light.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/Point.cpp -o vendor/simpleraytracer/Point.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/Ray.cpp -o vendor/simpleraytracer/Ray.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/RayTracer.cpp -o vendor/simpleraytracer/RayTracer.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/RayVector.cpp -o vendor/simpleraytracer/RayVector.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/Shape.cpp -o vendor/simpleraytracer/Shape.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/Sphere.cpp -o vendor/simpleraytracer/Sphere.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/Triangle.cpp -o vendor/simpleraytracer/Triangle.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c vendor/simpleraytracer/unit_limiter.cpp -o vendor/simpleraytracer/unit_limiter.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/R.c -o vendor/uuid/R.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/clear.c -o vendor/uuid/clear.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/compare.c -o vendor/uuid/compare.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/copy.c -o vendor/uuid/copy.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/gen_uuid.c -o vendor/uuid/gen_uuid.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/isnull.c -o vendor/uuid/isnull.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/pack.c -o vendor/uuid/pack.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/parse.c -o vendor/uuid/parse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/unpack.c -o vendor/uuid/unpack.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/uuid/unparse.c -o vendor/uuid/unparse.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/usr/include/libxml2 -DHAVE_LIBXML -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/home/hornik/tmp/CRAN_special_clang-san/Library/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c vendor/cigraph/vendor/mini-gmp/mini-gmp.c -o vendor/cigraph/vendor/mini-gmp/mini-gmp.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o igraph.so cpp11.o cpprinterface.o init.o rinterface.o rinterface_extra.o rrandom.o simpleraytracer.o vendor/arpack/dgetv0.o vendor/arpack/dlaqrb.o vendor/arpack/dmout.o vendor/arpack/dnaitr.o vendor/arpack/dnapps.o vendor/arpack/dnaup2.o vendor/arpack/dnaupd.o vendor/arpack/dnconv.o vendor/arpack/dneigh.o vendor/arpack/dneupd.o vendor/arpack/dngets.o vendor/arpack/dsaitr.o vendor/arpack/dsapps.o vendor/arpack/dsaup2.o vendor/arpack/dsaupd.o vendor/arpack/dsconv.o vendor/arpack/dseigt.o vendor/arpack/dsesrt.o vendor/arpack/dseupd.o vendor/arpack/dsgets.o vendor/arpack/dsortc.o vendor/arpack/dsortr.o vendor/arpack/dstatn.o vendor/arpack/dstats.o vendor/arpack/dstqrb.o vendor/arpack/dvout.o vendor/arpack/ivout.o vendor/arpack/second.o vendor/arpack/wrap.o vendor/cigraph/src/centrality/betweenness.o vendor/cigraph/src/centrality/centrality_other.o vendor/cigraph/src/centrality/centralization.o vendor/cigraph/src/centrality/closeness.o vendor/cigraph/src/centrality/coreness.o vendor/cigraph/src/centrality/eigenvector.o vendor/cigraph/src/centrality/hub_authority.o vendor/cigraph/src/centrality/pagerank.o vendor/cigraph/src/centrality/prpack.o vendor/cigraph/src/centrality/prpack/prpack_base_graph.o vendor/cigraph/src/centrality/prpack/prpack_igraph_graph.o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_ge_graph.o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_gs_graph.o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_scc_graph.o vendor/cigraph/src/centrality/prpack/prpack_preprocessed_schur_graph.o vendor/cigraph/src/centrality/prpack/prpack_result.o vendor/cigraph/src/centrality/prpack/prpack_solver.o vendor/cigraph/src/centrality/prpack/prpack_utils.o vendor/cigraph/src/centrality/truss.o vendor/cigraph/src/cliques/cliquer/cliquer.o vendor/cigraph/src/cliques/cliquer/cliquer_graph.o vendor/cigraph/src/cliques/cliquer/reorder.o vendor/cigraph/src/cliques/cliquer_wrapper.o vendor/cigraph/src/cliques/cliques.o vendor/cigraph/src/cliques/glet.o vendor/cigraph/src/cliques/maximal_cliques.o vendor/cigraph/src/community/community_misc.o vendor/cigraph/src/community/edge_betweenness.o vendor/cigraph/src/community/fast_modularity.o vendor/cigraph/src/community/fluid.o vendor/cigraph/src/community/infomap/infomap.o vendor/cigraph/src/community/infomap/infomap_FlowGraph.o vendor/cigraph/src/community/infomap/infomap_Greedy.o vendor/cigraph/src/community/label_propagation.o vendor/cigraph/src/community/leading_eigenvector.o vendor/cigraph/src/community/leiden.o vendor/cigraph/src/community/louvain.o vendor/cigraph/src/community/modularity.o vendor/cigraph/src/community/optimal_modularity.o vendor/cigraph/src/community/spinglass/NetDataTypes.o vendor/cigraph/src/community/spinglass/NetRoutines.o vendor/cigraph/src/community/spinglass/clustertool.o vendor/cigraph/src/community/spinglass/pottsmodel_2.o vendor/cigraph/src/community/voronoi.o vendor/cigraph/src/community/walktrap/walktrap.o vendor/cigraph/src/community/walktrap/walktrap_communities.o vendor/cigraph/src/community/walktrap/walktrap_graph.o vendor/cigraph/src/community/walktrap/walktrap_heap.o vendor/cigraph/src/connectivity/cohesive_blocks.o vendor/cigraph/src/connectivity/components.o vendor/cigraph/src/connectivity/reachability.o vendor/cigraph/src/connectivity/separators.o vendor/cigraph/src/constructors/adjacency.o vendor/cigraph/src/constructors/atlas.o vendor/cigraph/src/constructors/basic_constructors.o vendor/cigraph/src/constructors/circulant.o vendor/cigraph/src/constructors/de_bruijn.o vendor/cigraph/src/constructors/famous.o vendor/cigraph/src/constructors/full.o vendor/cigraph/src/constructors/generalized_petersen.o vendor/cigraph/src/constructors/kautz.o vendor/cigraph/src/constructors/lattices.o vendor/cigraph/src/constructors/lcf.o vendor/cigraph/src/constructors/linegraph.o vendor/cigraph/src/constructors/prufer.o vendor/cigraph/src/constructors/regular.o vendor/cigraph/src/constructors/trees.o vendor/cigraph/src/core/array.o vendor/cigraph/src/core/bitset.o vendor/cigraph/src/core/bitset_list.o vendor/cigraph/src/core/buckets.o vendor/cigraph/src/core/cutheap.o vendor/cigraph/src/core/dqueue.o vendor/cigraph/src/core/error.o vendor/cigraph/src/core/estack.o vendor/cigraph/src/core/fixed_vectorlist.o vendor/cigraph/src/core/genheap.o vendor/cigraph/src/core/grid.o vendor/cigraph/src/core/heap.o vendor/cigraph/src/core/indheap.o vendor/cigraph/src/core/interruption.o vendor/cigraph/src/core/marked_queue.o vendor/cigraph/src/core/matrix.o vendor/cigraph/src/core/matrix_list.o vendor/cigraph/src/core/memory.o vendor/cigraph/src/core/printing.o vendor/cigraph/src/core/progress.o vendor/cigraph/src/core/psumtree.o vendor/cigraph/src/core/set.o vendor/cigraph/src/core/sparsemat.o vendor/cigraph/src/core/stack.o vendor/cigraph/src/core/statusbar.o vendor/cigraph/src/core/strvector.o vendor/cigraph/src/core/trie.o vendor/cigraph/src/core/vector.o vendor/cigraph/src/core/vector_list.o vendor/cigraph/src/core/vector_ptr.o vendor/cigraph/src/flow/flow.o vendor/cigraph/src/flow/flow_conversion.o vendor/cigraph/src/flow/st-cuts.o vendor/cigraph/src/games/barabasi.o vendor/cigraph/src/games/callaway_traits.o vendor/cigraph/src/games/chung_lu.o vendor/cigraph/src/games/citations.o vendor/cigraph/src/games/correlated.o vendor/cigraph/src/games/degree_sequence.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_degree_sequence.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_hash.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_graph_molloy_optimized.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_mr-connected.o vendor/cigraph/src/games/degree_sequence_vl/gengraph_random.o vendor/cigraph/src/games/dotproduct.o vendor/cigraph/src/games/erdos_renyi.o vendor/cigraph/src/games/establishment.o vendor/cigraph/src/games/forestfire.o vendor/cigraph/src/games/grg.o vendor/cigraph/src/games/growing_random.o vendor/cigraph/src/games/islands.o vendor/cigraph/src/games/k_regular.o vendor/cigraph/src/games/preference.o vendor/cigraph/src/games/recent_degree.o vendor/cigraph/src/games/sbm.o vendor/cigraph/src/games/static_fitness.o vendor/cigraph/src/games/tree.o vendor/cigraph/src/games/watts_strogatz.o vendor/cigraph/src/graph/adjlist.o vendor/cigraph/src/graph/attributes.o vendor/cigraph/src/graph/basic_query.o vendor/cigraph/src/graph/caching.o vendor/cigraph/src/graph/cattributes.o vendor/cigraph/src/graph/graph_list.o vendor/cigraph/src/graph/iterators.o vendor/cigraph/src/graph/type_common.o vendor/cigraph/src/graph/type_indexededgelist.o vendor/cigraph/src/graph/visitors.o vendor/cigraph/src/hrg/hrg.o vendor/cigraph/src/hrg/hrg_types.o vendor/cigraph/src/internal/glpk_support.o vendor/cigraph/src/internal/hacks.o vendor/cigraph/src/internal/lsap.o vendor/cigraph/src/internal/qsort.o vendor/cigraph/src/internal/qsort_r.o vendor/cigraph/src/internal/utils.o vendor/cigraph/src/internal/zeroin.o vendor/cigraph/src/io/dimacs.o vendor/cigraph/src/io/dl.o vendor/cigraph/src/io/dot.o vendor/cigraph/src/io/edgelist.o vendor/cigraph/src/io/gml-tree.o vendor/cigraph/src/io/gml.o vendor/cigraph/src/io/graphdb.o vendor/cigraph/src/io/graphml.o vendor/cigraph/src/io/leda.o vendor/cigraph/src/io/lgl.o vendor/cigraph/src/io/ncol.o vendor/cigraph/src/io/pajek.o vendor/cigraph/src/io/parse_utils.o vendor/cigraph/src/isomorphism/bliss.o vendor/cigraph/src/isomorphism/bliss/defs.o vendor/cigraph/src/isomorphism/bliss/graph.o vendor/cigraph/src/isomorphism/bliss/heap.o vendor/cigraph/src/isomorphism/bliss/orbit.o vendor/cigraph/src/isomorphism/bliss/partition.o vendor/cigraph/src/isomorphism/bliss/uintseqhash.o vendor/cigraph/src/isomorphism/bliss/utils.o vendor/cigraph/src/isomorphism/isoclasses.o vendor/cigraph/src/isomorphism/isomorphism_misc.o vendor/cigraph/src/isomorphism/lad.o vendor/cigraph/src/isomorphism/queries.o vendor/cigraph/src/isomorphism/vf2.o vendor/cigraph/src/layout/circular.o vendor/cigraph/src/layout/davidson_harel.o vendor/cigraph/src/layout/drl/DensityGrid.o vendor/cigraph/src/layout/drl/DensityGrid_3d.o vendor/cigraph/src/layout/drl/drl_graph.o vendor/cigraph/src/layout/drl/drl_graph_3d.o vendor/cigraph/src/layout/drl/drl_layout.o vendor/cigraph/src/layout/drl/drl_layout_3d.o vendor/cigraph/src/layout/drl/drl_parse.o vendor/cigraph/src/layout/fruchterman_reingold.o vendor/cigraph/src/layout/gem.o vendor/cigraph/src/layout/graphopt.o vendor/cigraph/src/layout/kamada_kawai.o vendor/cigraph/src/layout/large_graph.o vendor/cigraph/src/layout/layout_bipartite.o vendor/cigraph/src/layout/layout_grid.o vendor/cigraph/src/layout/layout_random.o vendor/cigraph/src/layout/mds.o vendor/cigraph/src/layout/merge_dla.o vendor/cigraph/src/layout/merge_grid.o vendor/cigraph/src/layout/reingold_tilford.o vendor/cigraph/src/layout/sugiyama.o vendor/cigraph/src/layout/umap.o vendor/cigraph/src/linalg/arpack.o vendor/cigraph/src/linalg/blas.o vendor/cigraph/src/linalg/eigen.o vendor/cigraph/src/linalg/lapack.o vendor/cigraph/src/math/complex.o vendor/cigraph/src/math/safe_intop.o vendor/cigraph/src/math/utils.o vendor/cigraph/src/misc/bipartite.o vendor/cigraph/src/misc/chordality.o vendor/cigraph/src/misc/cocitation.o vendor/cigraph/src/misc/coloring.o vendor/cigraph/src/misc/conversion.o vendor/cigraph/src/misc/cycle_bases.o vendor/cigraph/src/misc/degree_sequence.o vendor/cigraph/src/misc/embedding.o vendor/cigraph/src/misc/feedback_arc_set.o vendor/cigraph/src/misc/graphicality.o vendor/cigraph/src/misc/matching.o vendor/cigraph/src/misc/microscopic_update.o vendor/cigraph/src/misc/mixing.o vendor/cigraph/src/misc/motifs.o vendor/cigraph/src/misc/order_cycle.o vendor/cigraph/src/misc/other.o vendor/cigraph/src/misc/power_law_fit.o vendor/cigraph/src/misc/scan.o vendor/cigraph/src/misc/sir.o vendor/cigraph/src/misc/spanning_trees.o vendor/cigraph/src/operators/add_edge.o vendor/cigraph/src/operators/complementer.o vendor/cigraph/src/operators/compose.o vendor/cigraph/src/operators/connect_neighborhood.o vendor/cigraph/src/operators/contract.o vendor/cigraph/src/operators/difference.o vendor/cigraph/src/operators/disjoint_union.o vendor/cigraph/src/operators/intersection.o vendor/cigraph/src/operators/join.o vendor/cigraph/src/operators/misc_internal.o vendor/cigraph/src/operators/permute.o vendor/cigraph/src/operators/reverse.o vendor/cigraph/src/operators/rewire.o vendor/cigraph/src/operators/rewire_edges.o vendor/cigraph/src/operators/simplify.o vendor/cigraph/src/operators/subgraph.o vendor/cigraph/src/operators/union.o vendor/cigraph/src/paths/all_shortest_paths.o vendor/cigraph/src/paths/astar.o vendor/cigraph/src/paths/bellman_ford.o vendor/cigraph/src/paths/dijkstra.o vendor/cigraph/src/paths/distances.o vendor/cigraph/src/paths/eulerian.o vendor/cigraph/src/paths/floyd_warshall.o vendor/cigraph/src/paths/histogram.o vendor/cigraph/src/paths/johnson.o vendor/cigraph/src/paths/random_walk.o vendor/cigraph/src/paths/shortest_paths.o vendor/cigraph/src/paths/simple_paths.o vendor/cigraph/src/paths/sparsifier.o vendor/cigraph/src/paths/unweighted.o vendor/cigraph/src/paths/voronoi.o vendor/cigraph/src/paths/widest_paths.o vendor/cigraph/src/properties/basic_properties.o vendor/cigraph/src/properties/complete.o vendor/cigraph/src/properties/constraint.o vendor/cigraph/src/properties/convergence_degree.o vendor/cigraph/src/properties/dag.o vendor/cigraph/src/properties/degrees.o vendor/cigraph/src/properties/ecc.o vendor/cigraph/src/properties/girth.o vendor/cigraph/src/properties/loops.o vendor/cigraph/src/properties/multiplicity.o vendor/cigraph/src/properties/neighborhood.o vendor/cigraph/src/properties/perfect.o vendor/cigraph/src/properties/spectral.o vendor/cigraph/src/properties/trees.o vendor/cigraph/src/properties/triangles.o vendor/cigraph/src/random/random.o vendor/cigraph/src/random/rng_glibc2.o vendor/cigraph/src/random/rng_mt19937.o vendor/cigraph/src/random/rng_pcg32.o vendor/cigraph/src/random/rng_pcg64.o vendor/cigraph/src/version.o vendor/cigraph/vendor/cs/cs_add.o vendor/cigraph/vendor/cs/cs_amd.o vendor/cigraph/vendor/cs/cs_chol.o vendor/cigraph/vendor/cs/cs_cholsol.o vendor/cigraph/vendor/cs/cs_compress.o vendor/cigraph/vendor/cs/cs_counts.o vendor/cigraph/vendor/cs/cs_cumsum.o vendor/cigraph/vendor/cs/cs_dfs.o vendor/cigraph/vendor/cs/cs_dmperm.o vendor/cigraph/vendor/cs/cs_droptol.o vendor/cigraph/vendor/cs/cs_dropzeros.o vendor/cigraph/vendor/cs/cs_dupl.o vendor/cigraph/vendor/cs/cs_entry.o vendor/cigraph/vendor/cs/cs_ereach.o vendor/cigraph/vendor/cs/cs_etree.o vendor/cigraph/vendor/cs/cs_fkeep.o vendor/cigraph/vendor/cs/cs_gaxpy.o vendor/cigraph/vendor/cs/cs_happly.o vendor/cigraph/vendor/cs/cs_house.o vendor/cigraph/vendor/cs/cs_ipvec.o vendor/cigraph/vendor/cs/cs_leaf.o vendor/cigraph/vendor/cs/cs_load.o vendor/cigraph/vendor/cs/cs_lsolve.o vendor/cigraph/vendor/cs/cs_ltsolve.o vendor/cigraph/vendor/cs/cs_lu.o vendor/cigraph/vendor/cs/cs_lusol.o vendor/cigraph/vendor/cs/cs_malloc.o vendor/cigraph/vendor/cs/cs_maxtrans.o vendor/cigraph/vendor/cs/cs_multiply.o vendor/cigraph/vendor/cs/cs_norm.o vendor/cigraph/vendor/cs/cs_permute.o vendor/cigraph/vendor/cs/cs_pinv.o vendor/cigraph/vendor/cs/cs_post.o vendor/cigraph/vendor/cs/cs_print.o vendor/cigraph/vendor/cs/cs_pvec.o vendor/cigraph/vendor/cs/cs_qr.o vendor/cigraph/vendor/cs/cs_qrsol.o vendor/cigraph/vendor/cs/cs_randperm.o vendor/cigraph/vendor/cs/cs_reach.o vendor/cigraph/vendor/cs/cs_scatter.o vendor/cigraph/vendor/cs/cs_scc.o vendor/cigraph/vendor/cs/cs_schol.o vendor/cigraph/vendor/cs/cs_spsolve.o vendor/cigraph/vendor/cs/cs_sqr.o vendor/cigraph/vendor/cs/cs_symperm.o vendor/cigraph/vendor/cs/cs_tdfs.o vendor/cigraph/vendor/cs/cs_transpose.o vendor/cigraph/vendor/cs/cs_updown.o vendor/cigraph/vendor/cs/cs_usolve.o vendor/cigraph/vendor/cs/cs_util.o vendor/cigraph/vendor/cs/cs_utsolve.o vendor/cigraph/vendor/pcg/pcg-advance-128.o vendor/cigraph/vendor/pcg/pcg-advance-64.o vendor/cigraph/vendor/pcg/pcg-output-128.o vendor/cigraph/vendor/pcg/pcg-output-32.o vendor/cigraph/vendor/pcg/pcg-output-64.o vendor/cigraph/vendor/pcg/pcg-rngs-128.o vendor/cigraph/vendor/pcg/pcg-rngs-64.o vendor/cigraph/vendor/plfit/gss.o vendor/cigraph/vendor/plfit/hzeta.o vendor/cigraph/vendor/plfit/kolmogorov.o vendor/cigraph/vendor/plfit/lbfgs.o vendor/cigraph/vendor/plfit/mt.o vendor/cigraph/vendor/plfit/options.o vendor/cigraph/vendor/plfit/platform.o vendor/cigraph/vendor/plfit/plfit.o vendor/cigraph/vendor/plfit/plfit_error.o vendor/cigraph/vendor/plfit/rbinom.o vendor/cigraph/vendor/plfit/sampling.o vendor/io/dl-lexer.o vendor/io/dl-parser.o vendor/io/gml-lexer.o vendor/io/gml-parser.o vendor/io/lgl-lexer.o vendor/io/lgl-parser.o vendor/io/ncol-lexer.o vendor/io/ncol-parser.o vendor/io/pajek-lexer.o vendor/io/pajek-parser.o vendor/simpleraytracer/Color.o vendor/simpleraytracer/Light.o vendor/simpleraytracer/Point.o vendor/simpleraytracer/Ray.o vendor/simpleraytracer/RayTracer.o vendor/simpleraytracer/RayVector.o vendor/simpleraytracer/Shape.o vendor/simpleraytracer/Sphere.o vendor/simpleraytracer/Triangle.o vendor/simpleraytracer/unit_limiter.o vendor/uuid/R.o vendor/uuid/clear.o vendor/uuid/compare.o vendor/uuid/copy.o vendor/uuid/gen_uuid.o vendor/uuid/isnull.o vendor/uuid/pack.o vendor/uuid/parse.o vendor/uuid/unpack.o vendor/uuid/unparse.o vendor/cigraph/vendor/mini-gmp/mini-gmp.o -lxml2 -lglpk -llapack -L/home/hornik/tmp/R-d-clang-xtra/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoQlqyT/R.INSTALL27bb64728e0ee4/igraph/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-igraph/00new/igraph/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (igraph) * installing *source* package ‘DelayedArray’ ... ** package ‘DelayedArray’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1k4zS3/R.INSTALL27e596305a3c9c/DelayedArray/src' clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c R_init_DelayedArray.c -o R_init_DelayedArray.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/S4Vectors/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c compress_atomic_vector.c -o compress_atomic_vector.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o compress_atomic_vector.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1k4zS3/R.INSTALL27e596305a3c9c/DelayedArray/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-DelayedArray/00new/DelayedArray/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘apply’ in package ‘DelayedArray’ Creating a new generic function for ‘sweep’ in package ‘DelayedArray’ Creating a new generic function for ‘scale’ in package ‘DelayedArray’ Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qpois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘DelayedArray’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DelayedArray) begin installing package ‘SummarizedExperiment’ * installing *source* package ‘SummarizedExperiment’ ... ** package ‘SummarizedExperiment’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SummarizedExperiment) begin installing package ‘MultiAssayExperiment’ begin installing package ‘MsFeatures’ * installing *source* package ‘MsFeatures’ ... ** package ‘MsFeatures’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MsFeatures) * installing *source* package ‘MultiAssayExperiment’ ... ** package ‘MultiAssayExperiment’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MultiAssayExperiment) begin installing package ‘QFeatures’ * installing *source* package ‘QFeatures’ ... ** package ‘QFeatures’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘sweep’ in package ‘QFeatures’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (QFeatures) begin installing package ‘MsExperiment’ begin installing package ‘PSMatch’ * installing *source* package ‘PSMatch’ ... ** package ‘PSMatch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PSMatch) * installing *source* package ‘MsExperiment’ ... ** package ‘MsExperiment’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MsExperiment) * installing *source* package ‘mzR’ ... ** package ‘mzR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.6 (1)’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeUVuu9/R.INSTALL27e2d83c79a34b/mzR/src' rm -f RcppPwiz.o RcppPwizModule.o RcppIdent.o RcppIdentModule.o ./boost/libs/system/src/error_code.o ./boost/libs/regex/src/posix_api.o ./boost/libs/regex/src/regex_debug.o ./boost/libs/regex/src/regex.o ./boost/libs/regex/src/wide_posix_api.o ./boost/libs/regex/src/static_mutex.o ./boost/libs/iostreams/src/zlib.o ./boost/libs/iostreams/src/file_descriptor.o ./boost/libs/filesystem/src/operations.o ./boost/libs/filesystem/src/directory.o ./boost/libs/filesystem/src/exception.o ./boost/libs/filesystem/src/path.o ./boost/libs/filesystem/src/unique_path.o ./boost/libs/filesystem/src/utf8_codecvt_facet.o ./boost/libs/chrono/src/chrono.o ./boost/libs/chrono/src/process_cpu_clocks.o ./boost/libs/chrono/src/thread_clock.o ./pwiz/data/msdata/Version.o ./pwiz/data/identdata/Version.o ./pwiz/data/common/MemoryIndex.o ./pwiz/data/common/CVTranslator.o ./pwiz/data/common/cv.o ./pwiz/data/common/ParamTypes.o ./pwiz/data/common/BinaryIndexStream.o ./pwiz/data/common/diff_std.o ./pwiz/data/common/Unimod.o ./pwiz/data/msdata/mz5/Configuration_mz5.o ./pwiz/data/msdata/mz5/Connection_mz5.o ./pwiz/data/msdata/mz5/Datastructures_mz5.o ./pwiz/data/msdata/mz5/ReferenceRead_mz5.o ./pwiz/data/msdata/mz5/ReferenceWrite_mz5.o ./pwiz/data/msdata/mz5/Translator_mz5.o ./pwiz/data/msdata/DefaultReaderList.o ./pwiz/data/msdata/ChromatogramList_mzML.o ./pwiz/data/msdata/ChromatogramList_mz5.o ./pwiz/data/msdata/examples.o ./pwiz/data/msdata/Serializer_mzML.o ./pwiz/data/msdata/Serializer_MSn.o ./pwiz/data/msdata/Reader.o ./pwiz/data/msdata/Serializer_mz5.o ./pwiz/data/msdata/Serializer_MGF.o ./pwiz/data/msdata/Serializer_mzXML.o ./pwiz/data/msdata/SpectrumListBase.o ./pwiz/data/msdata/SpectrumList_MGF.o ./pwiz/data/msdata/SpectrumList_mzML.o ./pwiz/data/msdata/SpectrumList_MSn.o ./pwiz/data/msdata/SpectrumList_mz5.o ./pwiz/data/msdata/BinaryDataEncoder.o ./pwiz/data/msdata/Diff.o ./pwiz/data/msdata/MSData.o ./pwiz/data/msdata/References.o ./pwiz/data/msdata/SpectrumList_mzXML.o ./pwiz/data/msdata/IO.o ./pwiz/data/msdata/SpectrumList_BTDX.o ./pwiz/data/msdata/SpectrumInfo.o ./pwiz/data/msdata/LegacyAdapter.o ./pwiz/data/msdata/SpectrumIterator.o ./pwiz/data/msdata/MSDataFile.o ./pwiz/data/msdata/MSNumpress.o ./pwiz/data/msdata/SpectrumListCache.o ./pwiz/data/msdata/Index_mzML.o ./pwiz/data/msdata/SpectrumWorkerThreads.o ./pwiz/data/identdata/IdentDataFile.o ./pwiz/data/identdata/IdentData.o ./pwiz/data/identdata/DefaultReaderList.o ./pwiz/data/identdata/Reader.o ./pwiz/data/identdata/Serializer_protXML.o ./pwiz/data/identdata/Serializer_pepXML.o ./pwiz/data/identdata/Serializer_mzid.o ./pwiz/data/identdata/IO.o ./pwiz/data/identdata/References.o ./pwiz/data/identdata/MascotReader.o ./pwiz/data/proteome/Modification.o ./pwiz/data/proteome/Digestion.o ./pwiz/data/proteome/Peptide.o ./pwiz/data/proteome/AminoAcid.o ./pwiz/utility/minimxml/XMLWriter.o ./pwiz/utility/minimxml/SAXParser.o ./pwiz/utility/chemistry/Chemistry.o ./pwiz/utility/chemistry/ChemistryData.o ./pwiz/utility/chemistry/MZTolerance.o ./pwiz/utility/misc/IntegerSet.o ./pwiz/utility/misc/Base64.o ./pwiz/utility/misc/BinaryData.o ./pwiz/utility/misc/IterationListener.o ./pwiz/utility/misc/MSIHandler.o ./pwiz/utility/misc/Filesystem.o ./pwiz/utility/misc/TabReader.o ./pwiz/utility/misc/random_access_compressed_ifstream.o ./pwiz/utility/misc/SHA1.o ./pwiz/utility/misc/SHA1Calculator.o ./pwiz/utility/misc/sha1calc.o ./pwiz/utility/misc/String.o ./RcppExports.o ./boost/libs/thread/src/pthread/once.o ./boost/libs/thread/src/pthread/thread.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppPwiz.cpp -o RcppPwiz.o In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:12: In file included from ./pwiz/data/msdata/MSDataFile.hpp:30: In file included from ./pwiz/data/msdata/Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:12: In file included from ./pwiz/data/msdata/MSDataFile.hpp:30: In file included from ./pwiz/data/msdata/Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:12: In file included from ./pwiz/data/msdata/MSDataFile.hpp:30: In file included from ./pwiz/data/msdata/Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ RcppPwiz.cpp:408:57: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 408 | Rprintf("Index whichScan out of bounds [1 ... %d].\n", n_scans); | ~~ ^~~~~~~ | %zu RcppPwiz.cpp:778:10: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical] 778 | if ( (precursorScanNum[i] > 0) | (precursorMZ[i] > 0) ) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | || RcppPwiz.cpp:778:10: note: cast one or both operands to int to silence this warning RcppPwiz.cpp:854:63: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat] 854 | Rprintf("Index whichChrom out of bounds [0 ... %d].\n", (clp->size())-1); | ~~ ^~~~~~~~~~~~~~~ | %zu In file included from RcppPwiz.cpp:1: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppPwizModule.cpp -o RcppPwizModule.o In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:12: In file included from ./pwiz/data/msdata/MSDataFile.hpp:30: In file included from ./pwiz/data/msdata/Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:12: In file included from ./pwiz/data/msdata/MSDataFile.hpp:30: In file included from ./pwiz/data/msdata/Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:12: In file included from ./pwiz/data/msdata/MSDataFile.hpp:30: In file included from ./pwiz/data/msdata/Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from RcppPwizModule.cpp:2: In file included from ./RcppPwiz.h:20: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppIdent.cpp -o RcppIdent.o In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:11: In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29: In file included from ./pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from RcppIdent.cpp:1: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppIdentModule.cpp -o RcppIdentModule.o In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:11: In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29: In file included from ./pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from RcppIdentModule.cpp:2: In file included from ./RcppIdent.h:14: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/system/src/error_code.cpp -o boost/libs/system/src/error_code.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/regex/src/posix_api.cpp -o boost/libs/regex/src/posix_api.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/regex/src/regex_debug.cpp -o boost/libs/regex/src/regex_debug.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/regex/src/regex.cpp -o boost/libs/regex/src/regex.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/regex/src/wide_posix_api.cpp -o boost/libs/regex/src/wide_posix_api.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/regex/src/static_mutex.cpp -o boost/libs/regex/src/static_mutex.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/iostreams/src/zlib.cpp -o boost/libs/iostreams/src/zlib.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/iostreams/src/file_descriptor.cpp -o boost/libs/iostreams/src/file_descriptor.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/filesystem/src/operations.cpp -o boost/libs/filesystem/src/operations.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/filesystem/src/directory.cpp -o boost/libs/filesystem/src/directory.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/filesystem/src/exception.cpp -o boost/libs/filesystem/src/exception.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/filesystem/src/path.cpp -o boost/libs/filesystem/src/path.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/filesystem/src/unique_path.cpp -o boost/libs/filesystem/src/unique_path.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/filesystem/src/utf8_codecvt_facet.cpp -o boost/libs/filesystem/src/utf8_codecvt_facet.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/chrono/src/chrono.cpp -o boost/libs/chrono/src/chrono.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/chrono/src/process_cpu_clocks.cpp -o boost/libs/chrono/src/process_cpu_clocks.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/chrono/src/thread_clock.cpp -o boost/libs/chrono/src/thread_clock.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Version.cpp -o pwiz/data/msdata/Version.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/Version.cpp -o pwiz/data/identdata/Version.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/common/MemoryIndex.cpp -o pwiz/data/common/MemoryIndex.o In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/MemoryIndex.cpp:25: In file included from pwiz/data/common/MemoryIndex.hpp:26: In file included from pwiz/data/common/Index.hpp:30: In file included from ./boost/shared_ptr.hpp:17: In file included from ./boost/smart_ptr/shared_ptr.hpp:17: In file included from ./boost/smart_ptr/detail/shared_count.hpp:27: In file included from ./boost/smart_ptr/detail/sp_counted_impl.hpp:27: In file included from ./boost/checked_delete.hpp:15: ./boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'pwiz::data::MemoryIndex::Impl' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 36 | delete x; | ^ ./boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete' requested here 154 | boost::checked_delete( p ); | ^ ./boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count' requested here 279 | boost::detail::shared_count( p ).swap( pn ); | ^ ./boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct' requested here 373 | boost::detail::sp_pointer_construct( this, p, pn ); | ^ pwiz/data/common/MemoryIndex.cpp:73:44: note: in instantiation of function template specialization 'boost::shared_ptr::shared_ptr' requested here 73 | PWIZ_API_DECL MemoryIndex::MemoryIndex() : impl_(new Impl) {} | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/common/CVTranslator.cpp -o pwiz/data/common/CVTranslator.o In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/data/common/CVTranslator.cpp:145:53: warning: '&&' within '||' [-Wlogical-op-parentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ~~ pwiz/data/common/CVTranslator.cpp:145:53: note: place parentheses around the '&&' expression to silence this warning 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ^ | ( ) pwiz/data/common/CVTranslator.cpp:146:40: warning: '&&' within '||' [-Wlogical-op-parentheses] 145 | return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit || | ~~ 146 | key=="pi_" && value==MS_PI && cvid==UO_pi || // MS_PI==photoionization, UO_pi==3.14 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ pwiz/data/common/CVTranslator.cpp:146:40: note: place parentheses around the '&&' expression to silence this warning 146 | key=="pi_" && value==MS_PI && cvid==UO_pi || // MS_PI==photoionization, UO_pi==3.14 | ^ | ( ) pwiz/data/common/CVTranslator.cpp:147:40: warning: '&&' within '||' [-Wlogical-op-parentheses] 146 | key=="pi_" && value==MS_PI && cvid==UO_pi || // MS_PI==photoionization, UO_pi==3.14 | ~~ 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ pwiz/data/common/CVTranslator.cpp:147:40: note: place parentheses around the '&&' expression to silence this warning 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ^ | ( ) pwiz/data/common/CVTranslator.cpp:148:40: warning: '&&' within '||' [-Wlogical-op-parentheses] 147 | key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point | ~~ 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ pwiz/data/common/CVTranslator.cpp:148:40: note: place parentheses around the '&&' expression to silence this warning 148 | key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274 | ^ | ( ) In file included from pwiz/data/common/CVTranslator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/common/cv.cpp -o pwiz/data/common/cv.o In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/common/cv.cpp:35: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/common/cv.cpp:34: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/common/ParamTypes.cpp -o pwiz/data/common/ParamTypes.o In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/data/common/ParamTypes.cpp:212:37: warning: unused variable 'it' [-Wunused-variable] 212 | vector::const_iterator it; | ^~ In file included from pwiz/data/common/ParamTypes.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/common/BinaryIndexStream.cpp -o pwiz/data/common/BinaryIndexStream.o In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/BinaryIndexStream.cpp:25: In file included from pwiz/data/common/BinaryIndexStream.hpp:26: In file included from pwiz/data/common/Index.hpp:30: In file included from ./boost/shared_ptr.hpp:17: In file included from ./boost/smart_ptr/shared_ptr.hpp:17: In file included from ./boost/smart_ptr/detail/shared_count.hpp:27: In file included from ./boost/smart_ptr/detail/sp_counted_impl.hpp:27: In file included from ./boost/checked_delete.hpp:15: ./boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'pwiz::data::BinaryIndexStream::Impl' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] 36 | delete x; | ^ ./boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete' requested here 154 | boost::checked_delete( p ); | ^ ./boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count' requested here 279 | boost::detail::shared_count( p ).swap( pn ); | ^ ./boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct' requested here 373 | boost::detail::sp_pointer_construct( this, p, pn ); | ^ pwiz/data/common/BinaryIndexStream.cpp:417:82: note: in instantiation of function template specialization 'boost::shared_ptr::shared_ptr' requested here 417 | PWIZ_API_DECL BinaryIndexStream::BinaryIndexStream(shared_ptr isPtr) : impl_(new Impl(isPtr)) {} | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/common/diff_std.cpp -o pwiz/data/common/diff_std.o In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/common/diff_std.cpp:27: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/common/Unimod.cpp -o pwiz/data/common/Unimod.o In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:19: In file included from ./boost_aux/boost/enum/base.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:19: In file included from ./boost_aux/boost/enum/base.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/common/Unimod.cpp:27: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ ./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy>' requested here 57 | template struct has_trivial_copy_constructor : public has_trivial_copy{}; | ^ ./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor>' requested here 945 | if (boost::has_trivial_copy_constructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, const std::basic_string &, boost::algorithm::detail::token_finderF>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/common/Unimod.cpp:131:22: note: in instantiation of function template specialization 'boost::algorithm::split>, const std::basic_string &, boost::algorithm::detail::is_classifiedF>' requested here 131 | bal::split(formulaTokens, itr->second, bal::is_space()); | ^ In file included from pwiz/data/common/Unimod.cpp:25: In file included from pwiz/data/common/Unimod.hpp:31: In file included from ./boost_aux/boost/enum.hpp:20: In file included from ./boost_aux/boost/enum/bitfield.hpp:22: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ ./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor>' requested here 946 | boost::has_trivial_destructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, const std::basic_string &, boost::algorithm::detail::token_finderF>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/common/Unimod.cpp:131:22: note: in instantiation of function template specialization 'boost::algorithm::split>, const std::basic_string &, boost::algorithm::detail::is_classifiedF>' requested here 131 | bal::split(formulaTokens, itr->second, bal::is_space()); | ^ 33 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/mz5/Configuration_mz5.cpp -o pwiz/data/msdata/mz5/Configuration_mz5.o In file included from pwiz/data/msdata/mz5/Configuration_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/mz5/Configuration_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/mz5/Configuration_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) 3 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/mz5/Connection_mz5.cpp -o pwiz/data/msdata/mz5/Connection_mz5.o In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:30: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/mz5/Datastructures_mz5.cpp -o pwiz/data/msdata/mz5/Datastructures_mz5.o In file included from pwiz/data/msdata/mz5/Datastructures_mz5.cpp:25: In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/mz5/Datastructures_mz5.cpp:25: In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/mz5/Datastructures_mz5.cpp:25: In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) 3 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp -o pwiz/data/msdata/mz5/ReferenceRead_mz5.o In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:31: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:31: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:31: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:27: In file included from pwiz/data/msdata/mz5/../SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/mz5/../SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp -o pwiz/data/msdata/mz5/ReferenceWrite_mz5.o In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp:24: In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) 3 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/mz5/Translator_mz5.cpp -o pwiz/data/msdata/mz5/Translator_mz5.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/DefaultReaderList.cpp -o pwiz/data/msdata/DefaultReaderList.o In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:29: In file included from pwiz/data/msdata/DefaultReaderList.hpp:29: In file included from pwiz/data/msdata/Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from pwiz/data/msdata/DefaultReaderList.cpp:30: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/ChromatogramList_mzML.cpp -o pwiz/data/msdata/ChromatogramList_mzML.o In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/ChromatogramList_mz5.cpp -o pwiz/data/msdata/ChromatogramList_mz5.o In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:28: In file included from pwiz/data/msdata/ChromatogramList_mz5.hpp:31: In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:31: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/examples.cpp -o pwiz/data/msdata/examples.o In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/examples.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Serializer_mzML.cpp -o pwiz/data/msdata/Serializer_mzML.o In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/Serializer_mzML.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Serializer_MSn.cpp -o pwiz/data/msdata/Serializer_MSn.o In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:28: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:28: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/Serializer_MSn.cpp:25: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ pwiz/data/msdata/Serializer_MSn.cpp:44:11: warning: unused variable 'sizeChargeMSn' [-Wunused-const-variable] 44 | const int sizeChargeMSn = 12; // struct Charge{ int z; double mass; } | ^~~~~~~~~~~~~ pwiz/data/msdata/Serializer_MSn.cpp:45:11: warning: unused variable 'sizePeakMSn' [-Wunused-const-variable] 45 | const int sizePeakMSn = 12; // struct Peak{ double mz; float intensity; } | ^~~~~~~~~~~ 33 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Reader.cpp -o pwiz/data/msdata/Reader.o In file included from pwiz/data/msdata/Reader.cpp:26: In file included from pwiz/data/msdata/Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/Reader.cpp:26: In file included from pwiz/data/msdata/Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Reader.cpp:26: In file included from pwiz/data/msdata/Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Serializer_mz5.cpp -o pwiz/data/msdata/Serializer_mz5.o In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:28: In file included from pwiz/data/msdata/Serializer_mz5.hpp:32: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from pwiz/data/msdata/Serializer_mz5.cpp:29: In file included from pwiz/data/msdata/SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/Serializer_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Serializer_MGF.cpp -o pwiz/data/msdata/Serializer_MGF.o In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:29: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:13: In file included from ./boost/spirit/home/karma/char.hpp:13: In file included from ./boost/spirit/home/karma/char/char.hpp:15: In file included from ./boost/spirit/home/support/string_traits.hpp:16: In file included from ./boost/spirit/home/support/container.hpp:21: In file included from ./boost/variant.hpp:17: In file included from ./boost/variant/variant.hpp:30: In file included from ./boost/variant/detail/initializer.hpp:21: In file included from ./boost/detail/reference_content.hpp:19: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 36 | template struct has_nothrow_copy_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::has_nothrow_constructor' requested here 27 | : T::type | ^ ./boost/mpl/not.hpp:41:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd>' requested here 41 | BOOST_MPL_AUX_NESTED_TYPE_WKND(T)::value | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND' 38 | ::boost::mpl::aux::nested_type_wknd \ | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::mpl::not_>' requested here 27 | : T::type | ^ ./boost/mpl/aux_/preprocessed/gcc/and.hpp:25:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd, boost::mpl::l_iter, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>>>' requested here 25 | BOOST_MPL_AUX_NESTED_TYPE_WKND(T1)::value | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND' 38 | ::boost::mpl::aux::nested_type_wknd \ | ^ ./boost/mpl/aux_/preprocessed/gcc/and.hpp:50:7: note: in instantiation of template class 'boost::mpl::aux::and_impl, boost::mpl::l_iter, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>>, mpl_::bool_, mpl_::bool_, mpl_::bool_>' requested here 50 | : aux::and_impl< | ^ ./boost/mpl/iter_fold_if.hpp:42:11: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) 42 | : and_< | ^ ./boost/mpl/iter_fold_if.hpp:85:9: note: in instantiation of template class 'boost::mpl::aux::iter_fold_if_impl, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect, boost::mpl::l_iter>>, mpl_::na, boost::mpl::always>>' requested here 85 | aux::iter_fold_if_impl< | ^ ./boost/mpl/iter_fold_if.hpp:102:20: note: in instantiation of member class 'boost::mpl::iter_fold_if, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect>::result_' requested here 102 | typename result_::state | ^ ./boost/variant/variant.hpp:190:27: note: in instantiation of template class 'boost::mpl::iter_fold_if, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect>' requested here 190 | typedef typename mpl::iter_fold_if< | ^ ./boost/variant/variant.hpp:1250:39: note: in instantiation of template class 'boost::detail::variant::find_fallback_type, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>' requested here 1250 | typedef typename detail::variant::find_fallback_type< | ^ ./boost/spirit/home/support/info.hpp:69:20: note: in instantiation of template class 'boost::variant, boost::recursive_wrapper, boost::recursive_wrapper>, boost::recursive_wrapper>>' requested here 69 | value_type value; | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:29: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:21: In file included from ./boost/spirit/home/karma/binary.hpp:13: In file included from ./boost/spirit/home/karma/binary/binary.hpp:15: In file included from ./boost/spirit/home/support/detail/endian.hpp:19: In file included from ./boost/endian/arithmetic.hpp:30: In file included from ./boost/endian/buffers.hpp:30: In file included from ./boost/endian/detail/endian_store.hpp:12: In file included from ./boost/endian/detail/is_trivially_copyable.hpp:11: ./boost/type_traits/has_trivial_assign.hpp:29:7: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 29 | BOOST_HAS_TRIVIAL_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:193:43: note: expanded from macro 'BOOST_HAS_TRIVIAL_ASSIGN' 193 | # define BOOST_HAS_TRIVIAL_ASSIGN(T) (__has_trivial_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Serializer_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Serializer_mzXML.cpp -o pwiz/data/msdata/Serializer_mzXML.o In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:33: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:33: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumListBase.cpp -o pwiz/data/msdata/SpectrumListBase.o In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ ./boost/type_traits/has_trivial_constructor.hpp:51:68: note: in instantiation of template class 'boost::has_trivial_constructor, std::basic_string>>>' requested here 51 | template struct has_trivial_default_constructor : public has_trivial_constructor {}; | ^ ./boost/mpl/if.hpp:63:68: note: in instantiation of template class 'boost::has_trivial_default_constructor, std::basic_string>>>' requested here 63 | BOOST_MPL_AUX_STATIC_CAST(bool, BOOST_MPL_AUX_VALUE_WKND(T1)::value) | ^ ./boost/range/detail/default_constructible_unary_fn.hpp:71:34: note: in instantiation of template class 'boost::mpl::if_, std::basic_string>>>, boost::range_detail::select_first, std::basic_string>>, boost::range_detail::default_constructible_unary_fn_wrapper, std::basic_string>>, const std::basic_string &>>' requested here 71 | typedef typename boost::mpl::if_< | ^ ./boost/range/adaptor/transformed.hpp:31:26: note: in instantiation of template class 'boost::range_detail::default_constructible_unary_fn_gen, std::basic_string>>, const std::basic_string &>' requested here 31 | typename default_constructible_unary_fn_gen< | ^ ./boost/range/adaptor/transformed.hpp:42:26: note: in instantiation of template class 'boost::range_detail::transform_iterator_gen, std::basic_string>>, std::_Rb_tree_const_iterator, std::basic_string>>>' requested here 42 | typename transform_iterator_gen< | ^ ./boost/range/adaptor/map.hpp:65:22: note: in instantiation of template class 'boost::range_detail::transformed_range, std::basic_string>>, const std::map, std::basic_string>>' requested here 65 | : public transformed_range< | ^ pwiz/data/msdata/SpectrumListBase.cpp:62:38: note: in instantiation of template class 'boost::range_detail::select_first_range, std::basic_string>>' requested here 62 | auto actualIdKeys = actualId | boost::adaptors::map_keys; | ^ In file included from pwiz/data/msdata/SpectrumListBase.cpp:25: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumList_MGF.cpp -o pwiz/data/msdata/SpectrumList_MGF.o In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ ./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy>>' requested here 57 | template struct has_trivial_copy_constructor : public has_trivial_copy{}; | ^ ./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor>>' requested here 945 | if (boost::has_trivial_copy_constructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/msdata/SpectrumList_MGF.cpp:243:38: note: in instantiation of function template specialization 'boost::algorithm::split>, std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 243 | bal::split(charges, value, bal::is_any_of(" ")); | ^ In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ ./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor>>' requested here 946 | boost::has_trivial_destructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/msdata/SpectrumList_MGF.cpp:243:38: note: in instantiation of function template specialization 'boost::algorithm::split>, std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 243 | bal::split(charges, value, bal::is_any_of(" ")); | ^ 33 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumList_mzML.cpp -o pwiz/data/msdata/SpectrumList_mzML.o In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:31: ./boost/bind.hpp:36:1: warning: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior. [-W#pragma-messages] 36 | BOOST_PRAGMA_MESSAGE( | ^ ./boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE' 24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x))) | ^ :416:2: note: expanded from here 416 | message("The practice of declaring the Bind placeholders (_1, _2, ...) " "in the global namespace is deprecated. Please use " " + using namespace boost::placeholders, " "or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.") | ^ In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26: In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumList_MSn.cpp -o pwiz/data/msdata/SpectrumList_MSn.o In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ pwiz/data/msdata/SpectrumList_MSn.cpp:641:12: warning: variable 'lineCount' set but not used [-Wunused-but-set-variable] 641 | size_t lineCount = 0; | ^ In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumList_mz5.cpp -o pwiz/data/msdata/SpectrumList_mz5.o In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mz5.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:28: In file included from pwiz/data/msdata/SpectrumList_mz5.hpp:31: In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:31: In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28: In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30: In file included from pwiz/data/msdata/mz5/../Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/BinaryDataEncoder.cpp -o pwiz/data/msdata/BinaryDataEncoder.o In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Diff.cpp -o pwiz/data/msdata/Diff.o In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Diff.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ pwiz/data/msdata/Diff.cpp:321:21: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] 321 | T current = fabs(*i - *j)/denominator; | ^ pwiz/data/msdata/Diff.cpp:355:20: note: in instantiation of function template specialization 'pwiz::data::diff_impl::maxdiff_and_index' requested here 355 | auto max = maxdiff_and_index(static_cast&>(a.data), | ^ pwiz/data/msdata/Diff.cpp:398:5: note: in instantiation of function template specialization 'pwiz::data::diff_impl::diffBinaryDataArray' requested here 398 | diffBinaryDataArray(a, b, a_b, b_a, config); | ^ pwiz/data/msdata/Diff.cpp:321:21: note: use function 'std::abs' instead 321 | T current = fabs(*i - *j)/denominator; | ^~~~ | std::abs 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/MSData.cpp -o pwiz/data/msdata/MSData.o In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/data/msdata/MSData.cpp:1115:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] 1115 | } | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ ./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy>>' requested here 57 | template struct has_trivial_copy_constructor : public has_trivial_copy{}; | ^ ./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor>>' requested here 945 | if (boost::has_trivial_copy_constructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, const std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/msdata/MSData.cpp:508:12: note: in instantiation of function template specialization 'boost::algorithm::split>, const std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 508 | boost::split(pairs, id, boost::is_any_of(" \t\n\r")); | ^ In file included from pwiz/data/msdata/MSData.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ ./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor>>' requested here 946 | boost::has_trivial_destructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, const std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/msdata/MSData.cpp:508:12: note: in instantiation of function template specialization 'boost::algorithm::split>, const std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 508 | boost::split(pairs, id, boost::is_any_of(" \t\n\r")); | ^ 33 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/References.cpp -o pwiz/data/msdata/References.o In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/References.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumList_mzXML.cpp -o pwiz/data/msdata/SpectrumList_mzXML.o In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25: In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ ./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy>>' requested here 57 | template struct has_trivial_copy_constructor : public has_trivial_copy{}; | ^ ./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor>>' requested here 945 | if (boost::has_trivial_copy_constructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/msdata/SpectrumList_mzXML.cpp:163:35: note: in instantiation of function template specialization 'boost::algorithm::split>, std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 163 | boost::algorithm::split(strCharges, possibleCharges, boost::is_any_of(",")); | ^ In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ ./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor>>' requested here 946 | boost::has_trivial_destructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/msdata/SpectrumList_mzXML.cpp:163:35: note: in instantiation of function template specialization 'boost::algorithm::split>, std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 163 | boost::algorithm::split(strCharges, possibleCharges, boost::is_any_of(",")); | ^ 33 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/IO.cpp -o pwiz/data/msdata/IO.o In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/data/msdata/IO.cpp:1660:2: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] 1660 | bool zlib = false; // Handle numpress+zlib | ^ pwiz/data/msdata/IO.cpp:1657:5: note: previous statement is here 1657 | if (usedConfig.byteOrder == BinaryDataEncoder::ByteOrder_BigEndian) | ^ pwiz/data/msdata/IO.cpp:2132:35: warning: '&&' within '||' [-Wlogical-op-parentheses] 2132 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ pwiz/data/msdata/IO.cpp:2132:35: note: place parentheses around the '&&' expression to silence this warning 2132 | else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList") | ^ | ( ) pwiz/data/msdata/IO.cpp:2836:31: warning: '&&' within '||' [-Wlogical-op-parentheses] 2836 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ pwiz/data/msdata/IO.cpp:2836:31: note: place parentheses around the '&&' expression to silence this warning 2836 | else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ || | ^ | ( ) In file included from pwiz/data/msdata/IO.cpp:29: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 33 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumList_BTDX.cpp -o pwiz/data/msdata/SpectrumList_BTDX.o In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26: In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ pwiz/data/msdata/SpectrumList_BTDX.cpp:279:19: warning: private field 'msd_' is not used [-Wunused-private-field] 279 | const MSData& msd_; | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumInfo.cpp -o pwiz/data/msdata/SpectrumInfo.o In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumInfo.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/LegacyAdapter.cpp -o pwiz/data/msdata/LegacyAdapter.o In file included from pwiz/data/msdata/LegacyAdapter.cpp:29: In file included from ./boost/lambda/lambda.hpp:14: In file included from ./boost/lambda/core.hpp:48: In file included from ./boost/lambda/detail/lambda_traits.hpp:18: In file included from ./boost/type_traits/object_traits.hpp:17: ./boost/type_traits/has_trivial_assign.hpp:29:7: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 29 | BOOST_HAS_TRIVIAL_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:193:43: note: expanded from macro 'BOOST_HAS_TRIVIAL_ASSIGN' 193 | # define BOOST_HAS_TRIVIAL_ASSIGN(T) (__has_trivial_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:29: In file included from ./boost/lambda/lambda.hpp:14: In file included from ./boost/lambda/core.hpp:48: In file included from ./boost/lambda/detail/lambda_traits.hpp:18: In file included from ./boost/type_traits/object_traits.hpp:18: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:29: In file included from ./boost/lambda/lambda.hpp:14: In file included from ./boost/lambda/core.hpp:48: In file included from ./boost/lambda/detail/lambda_traits.hpp:18: In file included from ./boost/type_traits/object_traits.hpp:19: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:29: In file included from ./boost/lambda/lambda.hpp:14: In file included from ./boost/lambda/core.hpp:48: In file included from ./boost/lambda/detail/lambda_traits.hpp:18: In file included from ./boost/type_traits/object_traits.hpp:20: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:29: In file included from ./boost/lambda/lambda.hpp:14: In file included from ./boost/lambda/core.hpp:48: In file included from ./boost/lambda/detail/lambda_traits.hpp:18: In file included from ./boost/type_traits/object_traits.hpp:21: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:29: In file included from ./boost/lambda/lambda.hpp:14: In file included from ./boost/lambda/core.hpp:48: In file included from ./boost/lambda/detail/lambda_traits.hpp:18: In file included from ./boost/type_traits/object_traits.hpp:22: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 36 | template struct has_nothrow_copy_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:29: In file included from ./boost/lambda/lambda.hpp:14: In file included from ./boost/lambda/core.hpp:48: In file included from ./boost/lambda/detail/lambda_traits.hpp:18: In file included from ./boost/type_traits/object_traits.hpp:23: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/LegacyAdapter.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 33 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumIterator.cpp -o pwiz/data/msdata/SpectrumIterator.o In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/data/msdata/SpectrumIterator.cpp:125:20: warning: '&&' within '||' [-Wlogical-op-parentheses] 125 | return (done() && &that.spectrumList_==&pastEndMarker_ || | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ pwiz/data/msdata/SpectrumIterator.cpp:125:20: note: place parentheses around the '&&' expression to silence this warning 125 | return (done() && &that.spectrumList_==&pastEndMarker_ || | ^ | ( ) pwiz/data/msdata/SpectrumIterator.cpp:126:45: warning: '&&' within '||' [-Wlogical-op-parentheses] 125 | return (done() && &that.spectrumList_==&pastEndMarker_ || | ~~ 126 | &spectrumList_==&pastEndMarker_ && that.done() || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ pwiz/data/msdata/SpectrumIterator.cpp:126:45: note: place parentheses around the '&&' expression to silence this warning 126 | &spectrumList_==&pastEndMarker_ && that.done() || | ^ | ( ) pwiz/data/msdata/SpectrumIterator.cpp:127:49: warning: '&&' within '||' [-Wlogical-op-parentheses] 126 | &spectrumList_==&pastEndMarker_ && that.done() || | ~~ 127 | &spectrumList_==&that.spectrumList_ && currentIndex_==that.currentIndex_); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pwiz/data/msdata/SpectrumIterator.cpp:127:49: note: place parentheses around the '&&' expression to silence this warning 127 | &spectrumList_==&that.spectrumList_ && currentIndex_==that.currentIndex_); | ^ | ( ) pwiz/data/msdata/SpectrumIterator.cpp:141:34: warning: '&&' within '||' [-Wlogical-op-parentheses] 141 | return !scanNumbers_.empty() && currentScanNumber_==scanNumbers_.end() || | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~ pwiz/data/msdata/SpectrumIterator.cpp:141:34: note: place parentheses around the '&&' expression to silence this warning 141 | return !scanNumbers_.empty() && currentScanNumber_==scanNumbers_.end() || | ^ | ( ) In file included from pwiz/data/msdata/SpectrumIterator.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/MSDataFile.cpp -o pwiz/data/msdata/MSDataFile.o In file included from pwiz/data/msdata/MSDataFile.cpp:26: In file included from pwiz/data/msdata/MSDataFile.hpp:30: In file included from pwiz/data/msdata/Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:26: In file included from pwiz/data/msdata/MSDataFile.hpp:30: In file included from pwiz/data/msdata/Reader.hpp:29: In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:26: In file included from pwiz/data/msdata/MSDataFile.hpp:30: In file included from pwiz/data/msdata/Reader.hpp:29: ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses] 39 | return !mobilityBounds || | ~~ 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning 40 | mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second; | ^ | ( ) In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:36: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:36: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/MSDataFile.cpp:31: In file included from pwiz/data/msdata/Serializer_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29: In file included from pwiz/data/msdata/SpectrumListBase.hpp:30: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/MSNumpress.cpp -o pwiz/data/msdata/MSNumpress.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumListCache.cpp -o pwiz/data/msdata/SpectrumListCache.o In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:25: In file included from ./boost/multi_index_container.hpp:36: In file included from ./boost/multi_index/detail/base_type.hpp:21: In file included from ./boost/multi_index/detail/index_base.hpp:33: In file included from ./boost/multi_index/detail/index_loader.hpp:22: In file included from ./boost/serialization/nvp.hpp:35: In file included from ./boost/serialization/split_free.hpp:22: In file included from ./boost/serialization/serialization.hpp:14: In file included from ./boost/serialization/strong_typedef.hpp:28: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:25: In file included from ./boost/multi_index_container.hpp:36: In file included from ./boost/multi_index/detail/base_type.hpp:21: In file included from ./boost/multi_index/detail/index_base.hpp:33: In file included from ./boost/multi_index/detail/index_loader.hpp:22: In file included from ./boost/serialization/nvp.hpp:35: In file included from ./boost/serialization/split_free.hpp:22: In file included from ./boost/serialization/serialization.hpp:14: In file included from ./boost/serialization/strong_typedef.hpp:29: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:25: In file included from ./boost/multi_index_container.hpp:36: In file included from ./boost/multi_index/detail/base_type.hpp:21: In file included from ./boost/multi_index/detail/index_base.hpp:33: In file included from ./boost/multi_index/detail/index_loader.hpp:22: In file included from ./boost/serialization/nvp.hpp:35: In file included from ./boost/serialization/split_free.hpp:22: In file included from ./boost/serialization/serialization.hpp:14: In file included from ./boost/serialization/strong_typedef.hpp:30: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 36 | template struct has_nothrow_copy_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:25: In file included from ./boost/multi_index_container.hpp:36: In file included from ./boost/multi_index/detail/base_type.hpp:21: In file included from ./boost/multi_index/detail/index_base.hpp:33: In file included from ./boost/multi_index/detail/index_loader.hpp:22: In file included from ./boost/serialization/nvp.hpp:35: In file included from ./boost/serialization/split_free.hpp:22: In file included from ./boost/serialization/serialization.hpp:14: In file included from ./boost/serialization/strong_typedef.hpp:30: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ ./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_copy_constructor' requested here 52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type) | ^ ./boost/serialization/strong_typedef.hpp:39:54: note: expanded from macro 'BOOST_STRONG_TYPEDEF' 39 | explicit D(const T& t_) BOOST_NOEXCEPT_IF(boost::has_nothrow_copy_constructor::value) : t(t_) {} \ | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:25: In file included from ./boost/multi_index_container.hpp:36: In file included from ./boost/multi_index/detail/base_type.hpp:21: In file included from ./boost/multi_index/detail/index_base.hpp:33: In file included from ./boost/multi_index/detail/index_loader.hpp:22: In file included from ./boost/serialization/nvp.hpp:35: In file included from ./boost/serialization/split_free.hpp:22: In file included from ./boost/serialization/serialization.hpp:14: In file included from ./boost/serialization/strong_typedef.hpp:29: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ ./boost/type_traits/has_nothrow_constructor.hpp:69:68: note: in instantiation of template class 'boost::has_nothrow_constructor' requested here 69 | template struct has_nothrow_default_constructor : public has_nothrow_constructor{}; | ^ ./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_default_constructor' requested here 52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type) | ^ ./boost/serialization/strong_typedef.hpp:40:34: note: expanded from macro 'BOOST_STRONG_TYPEDEF' 40 | D() BOOST_NOEXCEPT_IF(boost::has_nothrow_default_constructor::value) : t() {} \ | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:25: In file included from ./boost/multi_index_container.hpp:36: In file included from ./boost/multi_index/detail/base_type.hpp:21: In file included from ./boost/multi_index/detail/index_base.hpp:33: In file included from ./boost/multi_index/detail/index_loader.hpp:22: In file included from ./boost/serialization/nvp.hpp:35: In file included from ./boost/serialization/split_free.hpp:22: In file included from ./boost/serialization/serialization.hpp:14: In file included from ./boost/serialization/strong_typedef.hpp:28: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ ./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_assign' requested here 52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type) | ^ ./boost/serialization/strong_typedef.hpp:42:57: note: expanded from macro 'BOOST_STRONG_TYPEDEF' 42 | D& operator=(const D& rhs) BOOST_NOEXCEPT_IF(boost::has_nothrow_assign::value) {t = rhs.t; return *this;} \ | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:29: In file included from pwiz/data/msdata/SpectrumListWrapper.hpp:28: In file included from ./pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumListCache.cpp:25: In file included from pwiz/data/msdata/SpectrumListCache.hpp:28: In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27: In file included from ./pwiz/utility/misc/mru_list.hpp:26: In file included from ./boost/multi_index/hashed_index.hpp:43: In file included from ./boost/multi_index/hashed_index_fwd.hpp:16: In file included from ./boost/multi_index/detail/hash_index_args.hpp:17: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 35 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/Index_mzML.cpp -o pwiz/data/msdata/Index_mzML.o In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/Index_mzML.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/msdata/SpectrumWorkerThreads.cpp -o pwiz/data/msdata/SpectrumWorkerThreads.o In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:27: In file included from ./pwiz/data/msdata/SpectrumListWrapper.hpp:28: In file included from ./pwiz/data/msdata/SpectrumListBase.hpp:31: In file included from ./boost/range/adaptor/map.hpp:14: In file included from ./boost/range/adaptor/transformed.hpp:15: In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:15: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:28: ./pwiz/analysis/spectrum_processing/SpectrumList_Demux.hpp:47:14: warning: extra ';' inside a struct [-Wextra-semi] 47 | ); | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:30: In file included from ./pwiz/utility/misc/mru_list.hpp:25: In file included from ./boost/multi_index_container.hpp:36: In file included from ./boost/multi_index/detail/base_type.hpp:21: In file included from ./boost/multi_index/detail/index_base.hpp:33: In file included from ./boost/multi_index/detail/index_loader.hpp:22: In file included from ./boost/serialization/nvp.hpp:35: In file included from ./boost/serialization/split_free.hpp:22: In file included from ./boost/serialization/serialization.hpp:14: In file included from ./boost/serialization/strong_typedef.hpp:30: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 36 | template struct has_nothrow_copy_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:30: In file included from ./pwiz/utility/misc/mru_list.hpp:25: In file included from ./boost/multi_index_container.hpp:36: In file included from ./boost/multi_index/detail/base_type.hpp:21: In file included from ./boost/multi_index/detail/index_base.hpp:33: In file included from ./boost/multi_index/detail/index_loader.hpp:22: In file included from ./boost/serialization/nvp.hpp:35: In file included from ./boost/serialization/split_free.hpp:22: In file included from ./boost/serialization/serialization.hpp:14: In file included from ./boost/serialization/strong_typedef.hpp:30: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ ./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_copy_constructor' requested here 52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type) | ^ ./boost/serialization/strong_typedef.hpp:39:54: note: expanded from macro 'BOOST_STRONG_TYPEDEF' 39 | explicit D(const T& t_) BOOST_NOEXCEPT_IF(boost::has_nothrow_copy_constructor::value) : t(t_) {} \ | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ ./boost/type_traits/has_nothrow_constructor.hpp:69:68: note: in instantiation of template class 'boost::has_nothrow_constructor' requested here 69 | template struct has_nothrow_default_constructor : public has_nothrow_constructor{}; | ^ ./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_default_constructor' requested here 52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type) | ^ ./boost/serialization/strong_typedef.hpp:40:34: note: expanded from macro 'BOOST_STRONG_TYPEDEF' 40 | D() BOOST_NOEXCEPT_IF(boost::has_nothrow_default_constructor::value) : t() {} \ | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ ./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_assign' requested here 52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type) | ^ ./boost/serialization/strong_typedef.hpp:42:57: note: expanded from macro 'BOOST_STRONG_TYPEDEF' 42 | D& operator=(const D& rhs) BOOST_NOEXCEPT_IF(boost::has_nothrow_assign::value) {t = rhs.t; return *this;} \ | ^ In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 36 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/IdentDataFile.cpp -o pwiz/data/identdata/IdentDataFile.o In file included from pwiz/data/identdata/IdentDataFile.cpp:25: In file included from pwiz/data/identdata/IdentDataFile.hpp:29: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/IdentDataFile.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/IdentData.cpp -o pwiz/data/identdata/IdentData.o In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/IdentData.cpp:31: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/IdentData.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/DefaultReaderList.cpp -o pwiz/data/identdata/DefaultReaderList.o In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:29: In file included from pwiz/data/identdata/DefaultReaderList.hpp:29: In file included from pwiz/data/identdata/Reader.hpp:28: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/DefaultReaderList.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/Reader.cpp -o pwiz/data/identdata/Reader.o In file included from pwiz/data/identdata/Reader.cpp:26: In file included from pwiz/data/identdata/Reader.hpp:28: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/Reader.cpp:27: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/Serializer_protXML.cpp -o pwiz/data/identdata/Serializer_protXML.o In file included from pwiz/data/identdata/Serializer_protXML.cpp:28: In file included from pwiz/data/identdata/Serializer_protXML.hpp:29: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/Serializer_protXML.cpp:40: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ pwiz/data/identdata/Serializer_protXML.cpp:97:9: warning: field 'strict' will be initialized after field 'nPeptides' [-Wreorder-ctor] 96 | ilr(iterationListenerRegistry), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | nPeptides(0) 97 | strict(strict), | ^~~~~~~~~~~~~~ | SourceFilesPtr(returnValueSourceFiles) 98 | nPeptides(0), | ~~~~~~~~~~~~ | ilr(iterationListenerRegistry) 99 | SourceFilesPtr(returnValueSourceFiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | strict(strict) In file included from pwiz/data/identdata/Serializer_protXML.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ pwiz/data/identdata/Serializer_protXML.cpp:476:10: warning: private field 'readSpectrumQueries' is not used [-Wunused-private-field] 476 | bool readSpectrumQueries; | ^ pwiz/data/identdata/Serializer_protXML.cpp:477:38: warning: private field 'ilr' is not used [-Wunused-private-field] 477 | const IterationListenerRegistry* ilr; | ^ 35 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/Serializer_pepXML.cpp -o pwiz/data/identdata/Serializer_pepXML.o In file included from pwiz/data/identdata/Serializer_pepXML.cpp:25: In file included from pwiz/data/identdata/Serializer_pepXML.hpp:27: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:36: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:36: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ ./boost/type_traits/has_trivial_constructor.hpp:51:68: note: in instantiation of template class 'boost::has_trivial_constructor' requested here 51 | template struct has_trivial_default_constructor : public has_trivial_constructor {}; | ^ ./boost/mpl/if.hpp:63:68: note: in instantiation of template class 'boost::has_trivial_default_constructor' requested here 63 | BOOST_MPL_AUX_STATIC_CAST(bool, BOOST_MPL_AUX_VALUE_WKND(T1)::value) | ^ ./boost/range/detail/default_constructible_unary_fn.hpp:71:34: note: in instantiation of template class 'boost::mpl::if_, pwiz::identdata::(anonymous namespace)::EnzymePtr_name, boost::range_detail::default_constructible_unary_fn_wrapper>>' requested here 71 | typedef typename boost::mpl::if_< | ^ ./boost/range/adaptor/transformed.hpp:31:26: note: in instantiation of template class 'boost::range_detail::default_constructible_unary_fn_gen>' requested here 31 | typename default_constructible_unary_fn_gen< | ^ ./boost/range/adaptor/transformed.hpp:42:26: note: in instantiation of template class 'boost::range_detail::transform_iterator_gen *, std::vector>>>' requested here 42 | typename transform_iterator_gen< | ^ pwiz/data/identdata/Serializer_pepXML.cpp:415:55: note: in instantiation of template class 'boost::range_detail::transformed_range>>' requested here 415 | string enzymeName = bal::join(sip.enzymes.enzymes | boost::adaptors::transformed(EnzymePtr_name()), " + "); | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:36: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ ./boost/type_traits/has_trivial_constructor.hpp:51:68: note: in instantiation of template class 'boost::has_trivial_constructor' requested here 51 | template struct has_trivial_default_constructor : public has_trivial_constructor {}; | ^ ./boost/mpl/if.hpp:63:68: note: in instantiation of template class 'boost::has_trivial_default_constructor' requested here 63 | BOOST_MPL_AUX_STATIC_CAST(bool, BOOST_MPL_AUX_VALUE_WKND(T1)::value) | ^ ./boost/range/detail/default_constructible_unary_fn.hpp:71:34: note: in instantiation of template class 'boost::mpl::if_, pwiz::identdata::(anonymous namespace)::EnzymePtr_specificity, boost::range_detail::default_constructible_unary_fn_wrapper>' requested here 71 | typedef typename boost::mpl::if_< | ^ ./boost/range/adaptor/transformed.hpp:31:26: note: in instantiation of template class 'boost::range_detail::default_constructible_unary_fn_gen' requested here 31 | typename default_constructible_unary_fn_gen< | ^ ./boost/range/adaptor/transformed.hpp:42:26: note: in instantiation of template class 'boost::range_detail::transform_iterator_gen *, std::vector>>>' requested here 42 | typename transform_iterator_gen< | ^ pwiz/data/identdata/Serializer_pepXML.cpp:418:73: note: in instantiation of template class 'boost::range_detail::transformed_range>>' requested here 418 | int minSpecificity = *boost::range::min_element(sip.enzymes.enzymes | boost::adaptors::transformed(EnzymePtr_specificity())); | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:36: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ ./boost/type_traits/has_trivial_constructor.hpp:51:68: note: in instantiation of template class 'boost::has_trivial_constructor' requested here 51 | template struct has_trivial_default_constructor : public has_trivial_constructor {}; | ^ ./boost/mpl/if.hpp:63:68: note: in instantiation of template class 'boost::has_trivial_default_constructor' requested here 63 | BOOST_MPL_AUX_STATIC_CAST(bool, BOOST_MPL_AUX_VALUE_WKND(T1)::value) | ^ ./boost/range/detail/default_constructible_unary_fn.hpp:71:34: note: in instantiation of template class 'boost::mpl::if_, pwiz::identdata::(anonymous namespace)::EnzymePtr_missedCleavages, boost::range_detail::default_constructible_unary_fn_wrapper>' requested here 71 | typedef typename boost::mpl::if_< | ^ ./boost/range/adaptor/transformed.hpp:31:26: note: in instantiation of template class 'boost::range_detail::default_constructible_unary_fn_gen' requested here 31 | typename default_constructible_unary_fn_gen< | ^ ./boost/range/adaptor/transformed.hpp:42:26: note: in instantiation of template class 'boost::range_detail::transform_iterator_gen *, std::vector>>>' requested here 42 | typename transform_iterator_gen< | ^ pwiz/data/identdata/Serializer_pepXML.cpp:504:81: note: in instantiation of template class 'boost::range_detail::transformed_range>>' requested here 504 | int maxMissedCleavages = *boost::range::max_element(sip.enzymes.enzymes | boost::adaptors::transformed(EnzymePtr_missedCleavages())); | ^ pwiz/data/identdata/Serializer_pepXML.cpp:561:104: warning: adding 'char' to a string does not append to the string [-Wstring-plus-int] 561 | default: throw runtime_error("[write_search_summary] Unsupported AA residue: " + aa); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ pwiz/data/identdata/Serializer_pepXML.cpp:561:104: note: use array indexing to silence this warning 561 | default: throw runtime_error("[write_search_summary] Unsupported AA residue: " + aa); | ^ | & [ ] In file included from pwiz/data/identdata/Serializer_pepXML.cpp:36: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ ./boost/type_traits/has_trivial_constructor.hpp:51:68: note: in instantiation of template class 'boost::has_trivial_constructor' requested here 51 | template struct has_trivial_default_constructor : public has_trivial_constructor {}; | ^ ./boost/mpl/if.hpp:63:68: note: in instantiation of template class 'boost::has_trivial_default_constructor' requested here 63 | BOOST_MPL_AUX_STATIC_CAST(bool, BOOST_MPL_AUX_VALUE_WKND(T1)::value) | ^ ./boost/range/detail/default_constructible_unary_fn.hpp:71:34: note: in instantiation of template class 'boost::mpl::if_, pwiz::identdata::(anonymous namespace)::CVParam_name, boost::range_detail::default_constructible_unary_fn_wrapper>>' requested here 71 | typedef typename boost::mpl::if_< | ^ ./boost/range/adaptor/transformed.hpp:31:26: note: in instantiation of template class 'boost::range_detail::default_constructible_unary_fn_gen>' requested here 31 | typename default_constructible_unary_fn_gen< | ^ ./boost/range/adaptor/transformed.hpp:42:26: note: in instantiation of template class 'boost::range_detail::transform_iterator_gen>>' requested here 42 | typename transform_iterator_gen< | ^ pwiz/data/identdata/Serializer_pepXML.cpp:586:65: note: in instantiation of template class 'boost::range_detail::transformed_range>' requested here 586 | string description = bal::join(possibleMods | boost::adaptors::transformed(CVParam_name()), ", "); | ^ pwiz/data/identdata/Serializer_pepXML.cpp:1546:5: warning: non-void function does not return a value in all control paths [-Wreturn-type] 1546 | } | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ ./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy>>' requested here 57 | template struct has_trivial_copy_constructor : public has_trivial_copy{}; | ^ ./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor>>' requested here 945 | if (boost::has_trivial_copy_constructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2, const char *, const char *>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2, const char *, const char *>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, const char *const &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/identdata/Serializer_pepXML.cpp:113:18: note: in instantiation of function template specialization 'boost::algorithm::split>, const char *const &, boost::algorithm::detail::is_any_ofF>' requested here 113 | bal::split(names, ast.softwareNames, bal::is_any_of(";")); | ^ In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ ./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor>>' requested here 946 | boost::has_trivial_destructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2, const char *, const char *>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2, const char *, const char *>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, const char *const &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/identdata/Serializer_pepXML.cpp:113:18: note: in instantiation of function template specialization 'boost::algorithm::split>, const char *const &, boost::algorithm::detail::is_any_ofF>' requested here 113 | bal::split(names, ast.softwareNames, bal::is_any_of(";")); | ^ pwiz/data/identdata/Serializer_pepXML.cpp:995:25: warning: private field '_cvTranslator' is not used [-Wunused-private-field] 995 | const CVTranslator& _cvTranslator; | ^ pwiz/data/identdata/Serializer_pepXML.cpp:1450:25: warning: private field '_cvTranslator' is not used [-Wunused-private-field] 1450 | const CVTranslator& _cvTranslator; | ^ pwiz/data/identdata/Serializer_pepXML.cpp:1796:25: warning: private field '_cvTranslator' is not used [-Wunused-private-field] 1796 | const CVTranslator& _cvTranslator; | ^ pwiz/data/identdata/Serializer_pepXML.cpp:1970:38: warning: private field 'ilr' is not used [-Wunused-private-field] 1970 | const IterationListenerRegistry* ilr; | ^ 44 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/Serializer_mzid.cpp -o pwiz/data/identdata/Serializer_mzid.o In file included from pwiz/data/identdata/Serializer_mzid.cpp:26: In file included from pwiz/data/identdata/Serializer_mzid.hpp:28: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/Serializer_mzid.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/IO.cpp -o pwiz/data/identdata/IO.o In file included from pwiz/data/identdata/IO.cpp:26: In file included from pwiz/data/identdata/IO.hpp:27: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/IO.cpp:30: In file included from ./pwiz/utility/misc/Filesystem.hpp:34: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/References.cpp -o pwiz/data/identdata/References.o In file included from pwiz/data/identdata/References.cpp:25: In file included from pwiz/data/identdata/References.hpp:29: In file included from pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/data/identdata/References.cpp:149:13: warning: add explicit braces to avoid dangling else [-Wdangling-else] 149 | BOOST_FOREACH(OrganizationPtr& org, static_cast(c.get())->affiliations) | ^ ./boost/foreach.hpp:1107:108: note: expanded from macro 'BOOST_FOREACH' 1107 | if (boost::foreach_detail_::auto_any_t BOOST_FOREACH_ID(_foreach_col) = BOOST_FOREACH_CONTAIN(COL)) {} else \ | ^ In file included from pwiz/data/identdata/References.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/identdata/MascotReader.cpp -o pwiz/data/identdata/MascotReader.o In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:26: In file included from pwiz/data/identdata/MascotReader.hpp:28: In file included from ./pwiz/data/identdata/Reader.hpp:28: In file included from ./pwiz/data/identdata/IdentData.hpp:30: In file included from ./pwiz/data/proteome/Digestion.hpp:32: In file included from ./pwiz/data/proteome/Peptide.hpp:183: ./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/identdata/MascotReader.cpp:26: pwiz/data/identdata/MascotReader.hpp:62:11: warning: private field 'pimpl' is not used [-Wunused-private-field] 62 | Impl* pimpl; | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/proteome/Modification.cpp -o pwiz/data/proteome/Modification.o In file included from pwiz/data/proteome/Modification.cpp:27: pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/data/proteome/Modification.cpp:89:5: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 89 | auto_ptr formula_; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here 291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:108:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 108 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:100:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 100 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ In file included from pwiz/data/proteome/Modification.cpp:30: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/proteome/Digestion.cpp -o pwiz/data/proteome/Digestion.o In file included from pwiz/data/proteome/Digestion.cpp:27: In file included from pwiz/data/proteome/Digestion.hpp:32: In file included from pwiz/data/proteome/Peptide.hpp:183: pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/proteome/Digestion.cpp:33: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ ./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy>, boost::algorithm::is_equal>>' requested here 57 | template struct has_trivial_copy_constructor : public has_trivial_copy{}; | ^ ./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor>, boost::algorithm::is_equal>>' requested here 945 | if (boost::has_trivial_copy_constructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>, boost::algorithm::is_equal>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>, boost::algorithm::is_equal>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:98:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>, boost::algorithm::is_equal>>' requested here 98 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:104:21: note: in instantiation of function template specialization 'boost::algorithm::find_iterator<__gnu_cxx::__normal_iterator>>::find_iterator>, boost::algorithm::is_equal>>' requested here 104 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:71:40: note: in instantiation of function template specialization 'boost::algorithm::iter_find>>>, const std::basic_string &, boost::algorithm::detail::first_finderF<__gnu_cxx::__normal_iterator>, boost::algorithm::is_equal>>' requested here 71 | return ::boost::algorithm::iter_find( | ^ pwiz/data/proteome/Digestion.cpp:468:14: note: in instantiation of function template specialization 'boost::algorithm::find_all>>>, const std::basic_string &, std::basic_string>' requested here 468 | bal::find_all(instances, sequence_, peptide.sequence()); | ^ In file included from pwiz/data/proteome/Digestion.cpp:32: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ ./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor>, boost::algorithm::is_equal>>' requested here 946 | boost::has_trivial_destructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>, boost::algorithm::is_equal>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>, boost::algorithm::is_equal>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:98:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>, boost::algorithm::is_equal>>' requested here 98 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:104:21: note: in instantiation of function template specialization 'boost::algorithm::find_iterator<__gnu_cxx::__normal_iterator>>::find_iterator>, boost::algorithm::is_equal>>' requested here 104 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:71:40: note: in instantiation of function template specialization 'boost::algorithm::iter_find>>>, const std::basic_string &, boost::algorithm::detail::first_finderF<__gnu_cxx::__normal_iterator>, boost::algorithm::is_equal>>' requested here 71 | return ::boost::algorithm::iter_find( | ^ pwiz/data/proteome/Digestion.cpp:468:14: note: in instantiation of function template specialization 'boost::algorithm::find_all>>>, const std::basic_string &, std::basic_string>' requested here 468 | bal::find_all(instances, sequence_, peptide.sequence()); | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/proteome/Peptide.cpp -o pwiz/data/proteome/Peptide.o In file included from pwiz/data/proteome/Peptide.cpp:26: In file included from pwiz/data/proteome/Peptide.hpp:183: pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual] 189 | virtual void swap(ModificationMap&); | ^ ./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map::swap' declared here: type mismatch at 1st parameter ('virtual_map &' (aka 'virtual_map, std::allocator>> &') vs 'ModificationMap &') 218 | virtual void swap(virtual_map& x) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/proteome/Peptide.cpp:32: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ ./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy>>' requested here 57 | template struct has_trivial_copy_constructor : public has_trivial_copy{}; | ^ ./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor>>' requested here 945 | if (boost::has_trivial_copy_constructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/proteome/Peptide.cpp:337:13: note: in instantiation of function template specialization 'boost::algorithm::split>, std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 337 | split(tokens, massStr, bal::is_any_of(",")); | ^ In file included from pwiz/data/proteome/Peptide.cpp:31: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ ./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor>>' requested here 946 | boost::has_trivial_destructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ pwiz/data/proteome/Peptide.cpp:337:13: note: in instantiation of function template specialization 'boost::algorithm::split>, std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 337 | split(tokens, massStr, bal::is_any_of(",")); | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/data/proteome/AminoAcid.cpp -o pwiz/data/proteome/AminoAcid.o In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:30: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/data/proteome/AminoAcid.cpp:27: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/minimxml/XMLWriter.cpp -o pwiz/utility/minimxml/XMLWriter.o In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:29: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:13: In file included from ./boost/spirit/home/karma/char.hpp:13: In file included from ./boost/spirit/home/karma/char/char.hpp:15: In file included from ./boost/spirit/home/support/string_traits.hpp:16: In file included from ./boost/spirit/home/support/container.hpp:21: In file included from ./boost/variant.hpp:17: In file included from ./boost/variant/variant.hpp:30: In file included from ./boost/variant/detail/initializer.hpp:21: In file included from ./boost/detail/reference_content.hpp:19: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 36 | template struct has_nothrow_copy_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:29: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:13: In file included from ./boost/spirit/home/karma/char.hpp:13: In file included from ./boost/spirit/home/karma/char/char.hpp:15: In file included from ./boost/spirit/home/support/string_traits.hpp:16: In file included from ./boost/spirit/home/support/container.hpp:21: In file included from ./boost/variant.hpp:17: In file included from ./boost/variant/variant.hpp:40: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::has_nothrow_constructor' requested here 27 | : T::type | ^ ./boost/mpl/not.hpp:41:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd>' requested here 41 | BOOST_MPL_AUX_NESTED_TYPE_WKND(T)::value | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND' 38 | ::boost::mpl::aux::nested_type_wknd \ | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::mpl::not_>' requested here 27 | : T::type | ^ ./boost/mpl/aux_/preprocessed/gcc/and.hpp:25:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd, boost::mpl::l_iter, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>>>' requested here 25 | BOOST_MPL_AUX_NESTED_TYPE_WKND(T1)::value | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND' 38 | ::boost::mpl::aux::nested_type_wknd \ | ^ ./boost/mpl/aux_/preprocessed/gcc/and.hpp:50:7: note: in instantiation of template class 'boost::mpl::aux::and_impl, boost::mpl::l_iter, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>>, mpl_::bool_, mpl_::bool_, mpl_::bool_>' requested here 50 | : aux::and_impl< | ^ ./boost/mpl/iter_fold_if.hpp:42:11: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) 42 | : and_< | ^ ./boost/mpl/iter_fold_if.hpp:85:9: note: in instantiation of template class 'boost::mpl::aux::iter_fold_if_impl, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect, boost::mpl::l_iter>>, mpl_::na, boost::mpl::always>>' requested here 85 | aux::iter_fold_if_impl< | ^ ./boost/mpl/iter_fold_if.hpp:102:20: note: in instantiation of member class 'boost::mpl::iter_fold_if, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect>::result_' requested here 102 | typename result_::state | ^ ./boost/variant/variant.hpp:190:27: note: in instantiation of template class 'boost::mpl::iter_fold_if, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect>' requested here 190 | typedef typename mpl::iter_fold_if< | ^ ./boost/variant/variant.hpp:1250:39: note: in instantiation of template class 'boost::detail::variant::find_fallback_type, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>' requested here 1250 | typedef typename detail::variant::find_fallback_type< | ^ ./boost/spirit/home/support/info.hpp:69:20: note: in instantiation of template class 'boost::variant, boost::recursive_wrapper, boost::recursive_wrapper>, boost::recursive_wrapper>>' requested here 69 | value_type value; | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:29: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:21: In file included from ./boost/spirit/home/karma/binary.hpp:13: In file included from ./boost/spirit/home/karma/binary/binary.hpp:15: In file included from ./boost/spirit/home/support/detail/endian.hpp:19: In file included from ./boost/endian/arithmetic.hpp:30: In file included from ./boost/endian/buffers.hpp:30: In file included from ./boost/endian/detail/endian_store.hpp:12: In file included from ./boost/endian/detail/is_trivially_copyable.hpp:11: ./boost/type_traits/has_trivial_assign.hpp:29:7: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 29 | BOOST_HAS_TRIVIAL_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:193:43: note: expanded from macro 'BOOST_HAS_TRIVIAL_ASSIGN' 193 | # define BOOST_HAS_TRIVIAL_ASSIGN(T) (__has_trivial_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/minimxml/XMLWriter.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/minimxml/SAXParser.cpp -o pwiz/utility/minimxml/SAXParser.o In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/minimxml/SAXParser.cpp:29: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/chemistry/Chemistry.cpp -o pwiz/utility/chemistry/Chemistry.o In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:29: In file included from ./pwiz/utility/misc/Singleton.hpp:26: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/utility/chemistry/Chemistry.cpp:28: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/chemistry/ChemistryData.cpp -o pwiz/utility/chemistry/ChemistryData.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/chemistry/MZTolerance.cpp -o pwiz/utility/chemistry/MZTolerance.o In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/chemistry/MZTolerance.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/IntegerSet.cpp -o pwiz/utility/misc/IntegerSet.o In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/utility/misc/IntegerSet.cpp:307:63: warning: '&&' within '||' [-Wlogical-op-parentheses] 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ~~ pwiz/utility/misc/IntegerSet.cpp:307:63: note: place parentheses around the '&&' expression to silence this warning 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ^ | ( ) pwiz/utility/misc/IntegerSet.cpp:308:23: warning: '&&' within '||' [-Wlogical-op-parentheses] 307 | return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ || | ~~ 308 | it_==end_ && that.it_==nothing_.end()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ pwiz/utility/misc/IntegerSet.cpp:308:23: note: place parentheses around the '&&' expression to silence this warning 308 | it_==end_ && that.it_==nothing_.end()); | ^ | ( ) In file included from pwiz/utility/misc/IntegerSet.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/Base64.cpp -o pwiz/utility/misc/Base64.o In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/Base64.cpp:26: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/BinaryData.cpp -o pwiz/utility/misc/BinaryData.o pwiz/utility/misc/BinaryData.cpp:303:9: warning: unknown pragma ignored [-Wunknown-pragmas] 303 | #pragma managed(push, off) | ^ pwiz/utility/misc/BinaryData.cpp:475:9: warning: unknown pragma ignored [-Wunknown-pragmas] 475 | #pragma managed(pop) | ^ 2 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/IterationListener.cpp -o pwiz/utility/misc/IterationListener.o In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/IterationListener.cpp:26: In file included from pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/MSIHandler.cpp -o pwiz/utility/misc/MSIHandler.o In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/MSIHandler.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/Filesystem.cpp -o pwiz/utility/misc/Filesystem.o In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:53: In file included from ./boost_aux/boost/utility/singleton.hpp:18: In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32: In file included from ./boost/function_types/function_arity.hpp:12: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:58: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:13: In file included from ./boost/spirit/home/karma/char.hpp:13: In file included from ./boost/spirit/home/karma/char/char.hpp:15: In file included from ./boost/spirit/home/support/string_traits.hpp:16: In file included from ./boost/spirit/home/support/container.hpp:21: In file included from ./boost/variant.hpp:17: In file included from ./boost/variant/variant.hpp:30: In file included from ./boost/variant/detail/initializer.hpp:21: In file included from ./boost/detail/reference_content.hpp:19: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 36 | template struct has_nothrow_copy_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::has_nothrow_constructor' requested here 27 | : T::type | ^ ./boost/mpl/not.hpp:41:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd>' requested here 41 | BOOST_MPL_AUX_NESTED_TYPE_WKND(T)::value | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND' 38 | ::boost::mpl::aux::nested_type_wknd \ | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::mpl::not_>' requested here 27 | : T::type | ^ ./boost/mpl/aux_/preprocessed/gcc/and.hpp:25:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd, boost::mpl::l_iter, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>>>' requested here 25 | BOOST_MPL_AUX_NESTED_TYPE_WKND(T1)::value | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND' 38 | ::boost::mpl::aux::nested_type_wknd \ | ^ ./boost/mpl/aux_/preprocessed/gcc/and.hpp:50:7: note: in instantiation of template class 'boost::mpl::aux::and_impl, boost::mpl::l_iter, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>>, mpl_::bool_, mpl_::bool_, mpl_::bool_>' requested here 50 | : aux::and_impl< | ^ ./boost/mpl/iter_fold_if.hpp:42:11: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) 42 | : and_< | ^ ./boost/mpl/iter_fold_if.hpp:85:9: note: in instantiation of template class 'boost::mpl::aux::iter_fold_if_impl, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect, boost::mpl::l_iter>>, mpl_::na, boost::mpl::always>>' requested here 85 | aux::iter_fold_if_impl< | ^ ./boost/mpl/iter_fold_if.hpp:102:20: note: in instantiation of member class 'boost::mpl::iter_fold_if, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect>::result_' requested here 102 | typename result_::state | ^ ./boost/variant/variant.hpp:190:27: note: in instantiation of template class 'boost::mpl::iter_fold_if, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect>' requested here 190 | typedef typename mpl::iter_fold_if< | ^ ./boost/variant/variant.hpp:1250:39: note: in instantiation of template class 'boost::detail::variant::find_fallback_type, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>' requested here 1250 | typedef typename detail::variant::find_fallback_type< | ^ ./boost/spirit/home/support/info.hpp:69:20: note: in instantiation of template class 'boost::variant, boost::recursive_wrapper, boost::recursive_wrapper>, boost::recursive_wrapper>>' requested here 69 | value_type value; | ^ In file included from pwiz/utility/misc/Filesystem.cpp:58: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:21: In file included from ./boost/spirit/home/karma/binary.hpp:13: In file included from ./boost/spirit/home/karma/binary/binary.hpp:15: In file included from ./boost/spirit/home/support/detail/endian.hpp:19: In file included from ./boost/endian/arithmetic.hpp:30: In file included from ./boost/endian/buffers.hpp:30: In file included from ./boost/endian/detail/endian_store.hpp:12: In file included from ./boost/endian/detail/is_trivially_copyable.hpp:11: ./boost/type_traits/has_trivial_assign.hpp:29:7: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 29 | BOOST_HAS_TRIVIAL_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:193:43: note: expanded from macro 'BOOST_HAS_TRIVIAL_ASSIGN' 193 | # define BOOST_HAS_TRIVIAL_ASSIGN(T) (__has_trivial_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/Filesystem.cpp:26: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/TabReader.cpp -o pwiz/utility/misc/TabReader.o In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ pwiz/utility/misc/TabReader.cpp:44:22: warning: assigning field to itself [-Wself-assign-field] 44 | comment_char = comment_char; | ^ In file included from pwiz/utility/misc/TabReader.cpp:25: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 31 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/random_access_compressed_ifstream.cpp -o pwiz/utility/misc/random_access_compressed_ifstream.o In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/SHA1.cpp -o pwiz/utility/misc/SHA1.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/SHA1Calculator.cpp -o pwiz/utility/misc/SHA1Calculator.o In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/SHA1Calculator.cpp:33: In file included from ./pwiz/utility/misc/Std.hpp:31: In file included from ./pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/sha1calc.cpp -o pwiz/utility/misc/sha1calc.o In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:30: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:30: In file included from pwiz/utility/misc/Filesystem.hpp:34: In file included from pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/sha1calc.cpp:25: In file included from pwiz/utility/misc/unit.hpp:29: In file included from pwiz/utility/misc/DateTime.hpp:25: In file included from ./boost/date_time/local_time/local_time.hpp:19: In file included from ./boost/date_time/local_time/tz_database.hpp:14: In file included from ./boost/date_time/tz_db_base.hpp:24: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 30 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c pwiz/utility/misc/String.cpp -o pwiz/utility/misc/String.o In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/String.cpp:24: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:13: In file included from ./boost/spirit/home/karma/char.hpp:13: In file included from ./boost/spirit/home/karma/char/char.hpp:15: In file included from ./boost/spirit/home/support/string_traits.hpp:16: In file included from ./boost/spirit/home/support/container.hpp:21: In file included from ./boost/variant.hpp:17: In file included from ./boost/variant/variant.hpp:30: In file included from ./boost/variant/detail/initializer.hpp:21: In file included from ./boost/detail/reference_content.hpp:19: ./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 36 | template struct has_nothrow_copy_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY' 202 | # define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile::value && !is_reference::value && is_copy_constructible::value) | ^ In file included from pwiz/utility/misc/String.cpp:24: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:13: In file included from ./boost/spirit/home/karma/char.hpp:13: In file included from ./boost/spirit/home/karma/char/char.hpp:15: In file included from ./boost/spirit/home/support/string_traits.hpp:16: In file included from ./boost/spirit/home/support/container.hpp:21: In file included from ./boost/variant.hpp:17: In file included from ./boost/variant/variant.hpp:40: In file included from ./boost/blank.hpp:26: In file included from ./boost/type_traits/is_stateless.hpp:12: ./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins] 41 | : public integral_constant ::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{}; | ^ ./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR' 187 | # define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:32: In file included from ./boost/format.hpp:38: In file included from ./boost/format/internals.hpp:21: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::has_nothrow_constructor' requested here 27 | : T::type | ^ ./boost/mpl/not.hpp:41:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd>' requested here 41 | BOOST_MPL_AUX_NESTED_TYPE_WKND(T)::value | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND' 38 | ::boost::mpl::aux::nested_type_wknd \ | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::mpl::not_>' requested here 27 | : T::type | ^ ./boost/mpl/aux_/preprocessed/gcc/and.hpp:25:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd, boost::mpl::l_iter, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>>>' requested here 25 | BOOST_MPL_AUX_NESTED_TYPE_WKND(T1)::value | ^ ./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND' 38 | ::boost::mpl::aux::nested_type_wknd \ | ^ ./boost/mpl/aux_/preprocessed/gcc/and.hpp:50:7: note: in instantiation of template class 'boost::mpl::aux::and_impl, boost::mpl::l_iter, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>>, mpl_::bool_, mpl_::bool_, mpl_::bool_>' requested here 50 | : aux::and_impl< | ^ ./boost/mpl/iter_fold_if.hpp:42:11: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) 42 | : and_< | ^ ./boost/mpl/iter_fold_if.hpp:85:9: note: in instantiation of template class 'boost::mpl::aux::iter_fold_if_impl, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect, boost::mpl::l_iter>>, mpl_::na, boost::mpl::always>>' requested here 85 | aux::iter_fold_if_impl< | ^ ./boost/mpl/iter_fold_if.hpp:102:20: note: in instantiation of member class 'boost::mpl::iter_fold_if, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect>::result_' requested here 102 | typename result_::state | ^ ./boost/variant/variant.hpp:190:27: note: in instantiation of template class 'boost::mpl::iter_fold_if, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect>, boost::mpl::protect>' requested here 190 | typedef typename mpl::iter_fold_if< | ^ ./boost/variant/variant.hpp:1250:39: note: in instantiation of template class 'boost::detail::variant::find_fallback_type, boost::spirit::info::nil_, boost::mpl::l_item, std::basic_string, boost::mpl::l_item, boost::recursive_wrapper, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_item, boost::recursive_wrapper>, boost::mpl::l_end>>>>>>' requested here 1250 | typedef typename detail::variant::find_fallback_type< | ^ ./boost/spirit/home/support/info.hpp:69:20: note: in instantiation of template class 'boost::variant, boost::recursive_wrapper, boost::recursive_wrapper>, boost::recursive_wrapper>>' requested here 69 | value_type value; | ^ In file included from pwiz/utility/misc/String.cpp:24: In file included from ./boost/spirit/include/karma.hpp:16: In file included from ./boost/spirit/home/karma.hpp:21: In file included from ./boost/spirit/home/karma/binary.hpp:13: In file included from ./boost/spirit/home/karma/binary/binary.hpp:15: In file included from ./boost/spirit/home/support/detail/endian.hpp:19: In file included from ./boost/endian/arithmetic.hpp:30: In file included from ./boost/endian/buffers.hpp:30: In file included from ./boost/endian/detail/endian_store.hpp:12: In file included from ./boost/endian/detail/is_trivially_copyable.hpp:11: ./boost/type_traits/has_trivial_assign.hpp:29:7: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 29 | BOOST_HAS_TRIVIAL_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:193:43: note: expanded from macro 'BOOST_HAS_TRIVIAL_ASSIGN' 193 | # define BOOST_HAS_TRIVIAL_ASSIGN(T) (__has_trivial_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from pwiz/utility/misc/String.cpp:21: In file included from pwiz/utility/misc/String.hpp:31: In file included from ./boost/algorithm/string.hpp:23: In file included from ./boost/algorithm/string/split.hpp:16: In file included from ./boost/algorithm/string/iter_find.hpp:27: In file included from ./boost/algorithm/string/find_iterator.hpp:24: In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:21: In file included from ./boost/type_index.hpp:29: In file included from ./boost/type_index/stl_type_index.hpp:47: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 34 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/thread/src/pthread/once.cpp -o boost/libs/thread/src/pthread/once.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c boost/libs/thread/src/pthread/thread.cpp -o boost/libs/thread/src/pthread/thread.o In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:604:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 604 | BOOST_HASH_SPECIALIZE(bool) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:605:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 605 | BOOST_HASH_SPECIALIZE(char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:606:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 606 | BOOST_HASH_SPECIALIZE(signed char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:607:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 607 | BOOST_HASH_SPECIALIZE(unsigned char) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:609:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 609 | BOOST_HASH_SPECIALIZE(wchar_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:612:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 612 | BOOST_HASH_SPECIALIZE(char16_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:615:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 615 | BOOST_HASH_SPECIALIZE(char32_t) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:617:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 617 | BOOST_HASH_SPECIALIZE(short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:618:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 618 | BOOST_HASH_SPECIALIZE(unsigned short) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:619:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 619 | BOOST_HASH_SPECIALIZE(int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:620:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 620 | BOOST_HASH_SPECIALIZE(unsigned int) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:621:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 621 | BOOST_HASH_SPECIALIZE(long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:622:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 622 | BOOST_HASH_SPECIALIZE(unsigned long) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:624:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 624 | BOOST_HASH_SPECIALIZE(float) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:625:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 625 | BOOST_HASH_SPECIALIZE(double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:626:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 626 | BOOST_HASH_SPECIALIZE(long double) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:628:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 628 | BOOST_HASH_SPECIALIZE_REF(std::string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:630:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 630 | BOOST_HASH_SPECIALIZE_REF(std::wstring) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:633:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 633 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:636:5: note: in instantiation of template class 'boost::hash_detail::hash_base>' requested here 636 | BOOST_HASH_SPECIALIZE_REF(std::basic_string) | ^ ./boost/container_hash/hash.hpp:586:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE_REF' 586 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:653:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 653 | BOOST_HASH_SPECIALIZE(boost::long_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:654:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 654 | BOOST_HASH_SPECIALIZE(boost::ulong_long_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function<__int128, unsigned long>' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:658:5: note: in instantiation of template class 'boost::hash_detail::hash_base<__int128>' requested here 658 | BOOST_HASH_SPECIALIZE(boost::int128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function<__int128, unsigned long>' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:659:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 659 | BOOST_HASH_SPECIALIZE(boost::uint128_type) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:674:5: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 674 | BOOST_HASH_SPECIALIZE(std::type_index) | ^ ./boost/container_hash/hash.hpp:576:19: note: expanded from macro 'BOOST_HASH_SPECIALIZE' 576 | : public boost::hash_detail::hash_base \ | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:19: In file included from ./boost/thread/future.hpp:51: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:38: ./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins] 27 | template struct has_nothrow_constructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR' 199 | # define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible::value) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:19: In file included from ./boost/thread/future.hpp:51: In file included from ./boost/optional.hpp:15: In file included from ./boost/optional/optional.hpp:47: In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16: ./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins] 65 | BOOST_HAS_NOTHROW_ASSIGN(T) | ^ ./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN' 205 | # define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile::value && is_assignable::value) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:19: In file included from ./boost/thread/future.hpp:65: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:19: In file included from ./boost/thread/future.hpp:65: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:11: In file included from ./boost/thread/thread_only.hpp:22: In file included from ./boost/thread/detail/thread.hpp:41: In file included from ./boost/functional/hash.hpp:6: ./boost/container_hash/hash.hpp:131:33: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 131 | struct hash_base : std::unary_function {}; | ^ ./boost/container_hash/hash.hpp:687:18: note: in instantiation of template class 'boost::hash_detail::hash_base' requested here 687 | : public boost::hash_detail::hash_base | ^ ./boost/container_hash/hash.hpp:415:24: note: in instantiation of template class 'boost::hash' requested here 415 | boost::hash hasher; | ^ ./boost/container_hash/hash.hpp:546:9: note: in instantiation of function template specialization 'boost::hash_combine' requested here 546 | hash_combine(seed, &v.category()); | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/bits/stl_function.h:124:7: note: 'unary_function' has been explicitly marked deprecated here 124 | } _GLIBCXX11_DEPRECATED; | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:107:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 107 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:98:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 98 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:19: In file included from ./boost/thread/future.hpp:65: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:22: ./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 34 | BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX | ^ ./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY' 190 | # define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference::value) | ^ ./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy>>' requested here 57 | template struct has_trivial_copy_constructor : public has_trivial_copy{}; | ^ ./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor>>' requested here 945 | if (boost::has_trivial_copy_constructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ boost/libs/thread/src/pthread/thread.cpp:539:24: note: in instantiation of function template specialization 'boost::algorithm::split>, std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 539 | boost::split(key_val, line, boost::is_any_of(":")); | ^ In file included from boost/libs/thread/src/pthread/thread.cpp:19: In file included from ./boost/thread/future.hpp:65: In file included from ./boost/function.hpp:30: In file included from ./boost/function/detail/prologue.hpp:17: In file included from ./boost/function/function_base.hpp:23: ./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 30 | template struct has_trivial_destructor : public integral_constant{}; | ^ ./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR' 196 | # define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T) && is_destructible::value) | ^ ./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor>>' requested here 946 | boost::has_trivial_destructor::value && | ^ ./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::assign_to>>' requested here 720 | this->assign_to(f); | ^ ./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2>>, __gnu_cxx::__normal_iterator>, __gnu_cxx::__normal_iterator>>::function2>>' requested here 51 | m_Finder(Finder) {} | ^ ./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<__gnu_cxx::__normal_iterator>>::find_iterator_base>>' requested here 261 | detail::find_iterator_base(Finder,0), | ^ ./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<__gnu_cxx::__normal_iterator>>::split_iterator>>' requested here 178 | find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ), | ^ ./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split>, std::basic_string &, boost::algorithm::detail::token_finderF>>' requested here 158 | return ::boost::algorithm::iter_split( | ^ boost/libs/thread/src/pthread/thread.cpp:539:24: note: in instantiation of function template specialization 'boost::algorithm::split>, std::basic_string &, boost::algorithm::detail::is_any_ofF>' requested here 539 | boost::split(key_val, line, boost::is_any_of(":")); | ^ 32 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++11 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o mzR.so RcppPwiz.o RcppPwizModule.o RcppIdent.o RcppIdentModule.o ./boost/libs/system/src/error_code.o ./boost/libs/regex/src/posix_api.o ./boost/libs/regex/src/regex_debug.o ./boost/libs/regex/src/regex.o ./boost/libs/regex/src/wide_posix_api.o ./boost/libs/regex/src/static_mutex.o ./boost/libs/iostreams/src/zlib.o ./boost/libs/iostreams/src/file_descriptor.o ./boost/libs/filesystem/src/operations.o ./boost/libs/filesystem/src/directory.o ./boost/libs/filesystem/src/exception.o ./boost/libs/filesystem/src/path.o ./boost/libs/filesystem/src/unique_path.o ./boost/libs/filesystem/src/utf8_codecvt_facet.o ./boost/libs/chrono/src/chrono.o ./boost/libs/chrono/src/process_cpu_clocks.o ./boost/libs/chrono/src/thread_clock.o ./pwiz/data/msdata/Version.o ./pwiz/data/identdata/Version.o ./pwiz/data/common/MemoryIndex.o ./pwiz/data/common/CVTranslator.o ./pwiz/data/common/cv.o ./pwiz/data/common/ParamTypes.o ./pwiz/data/common/BinaryIndexStream.o ./pwiz/data/common/diff_std.o ./pwiz/data/common/Unimod.o ./pwiz/data/msdata/mz5/Configuration_mz5.o ./pwiz/data/msdata/mz5/Connection_mz5.o ./pwiz/data/msdata/mz5/Datastructures_mz5.o ./pwiz/data/msdata/mz5/ReferenceRead_mz5.o ./pwiz/data/msdata/mz5/ReferenceWrite_mz5.o ./pwiz/data/msdata/mz5/Translator_mz5.o ./pwiz/data/msdata/DefaultReaderList.o ./pwiz/data/msdata/ChromatogramList_mzML.o ./pwiz/data/msdata/ChromatogramList_mz5.o ./pwiz/data/msdata/examples.o ./pwiz/data/msdata/Serializer_mzML.o ./pwiz/data/msdata/Serializer_MSn.o ./pwiz/data/msdata/Reader.o ./pwiz/data/msdata/Serializer_mz5.o ./pwiz/data/msdata/Serializer_MGF.o ./pwiz/data/msdata/Serializer_mzXML.o ./pwiz/data/msdata/SpectrumListBase.o ./pwiz/data/msdata/SpectrumList_MGF.o ./pwiz/data/msdata/SpectrumList_mzML.o ./pwiz/data/msdata/SpectrumList_MSn.o ./pwiz/data/msdata/SpectrumList_mz5.o ./pwiz/data/msdata/BinaryDataEncoder.o ./pwiz/data/msdata/Diff.o ./pwiz/data/msdata/MSData.o ./pwiz/data/msdata/References.o ./pwiz/data/msdata/SpectrumList_mzXML.o ./pwiz/data/msdata/IO.o ./pwiz/data/msdata/SpectrumList_BTDX.o ./pwiz/data/msdata/SpectrumInfo.o ./pwiz/data/msdata/LegacyAdapter.o ./pwiz/data/msdata/SpectrumIterator.o ./pwiz/data/msdata/MSDataFile.o ./pwiz/data/msdata/MSNumpress.o ./pwiz/data/msdata/SpectrumListCache.o ./pwiz/data/msdata/Index_mzML.o ./pwiz/data/msdata/SpectrumWorkerThreads.o ./pwiz/data/identdata/IdentDataFile.o ./pwiz/data/identdata/IdentData.o ./pwiz/data/identdata/DefaultReaderList.o ./pwiz/data/identdata/Reader.o ./pwiz/data/identdata/Serializer_protXML.o ./pwiz/data/identdata/Serializer_pepXML.o ./pwiz/data/identdata/Serializer_mzid.o ./pwiz/data/identdata/IO.o ./pwiz/data/identdata/References.o ./pwiz/data/identdata/MascotReader.o ./pwiz/data/proteome/Modification.o ./pwiz/data/proteome/Digestion.o ./pwiz/data/proteome/Peptide.o ./pwiz/data/proteome/AminoAcid.o ./pwiz/utility/minimxml/XMLWriter.o ./pwiz/utility/minimxml/SAXParser.o ./pwiz/utility/chemistry/Chemistry.o ./pwiz/utility/chemistry/ChemistryData.o ./pwiz/utility/chemistry/MZTolerance.o ./pwiz/utility/misc/IntegerSet.o ./pwiz/utility/misc/Base64.o ./pwiz/utility/misc/BinaryData.o ./pwiz/utility/misc/IterationListener.o ./pwiz/utility/misc/MSIHandler.o ./pwiz/utility/misc/Filesystem.o ./pwiz/utility/misc/TabReader.o ./pwiz/utility/misc/random_access_compressed_ifstream.o ./pwiz/utility/misc/SHA1.o ./pwiz/utility/misc/SHA1Calculator.o ./pwiz/utility/misc/sha1calc.o ./pwiz/utility/misc/String.o ./RcppExports.o ./boost/libs/thread/src/pthread/once.o ./boost/libs/thread/src/pthread/thread.o -lpthread /home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/lib/libhdf5_cpp.a /home/hornik/tmp/CRAN_special_clang-san/Library/Rhdf5lib/lib/libhdf5.a -lcrypto -lcurl -lsz -laec -lz -ldl -lm -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeUVuu9/R.INSTALL27e2d83c79a34b/mzR/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-mzR/00new/mzR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f52c0d67191 in H5I_dec_ref /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7f52c11339e3 in H5T__path_find_real /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7f52c1121faa in H5T__register /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7f52c110a3da in H5T__register_int /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7f52c110106d in H5T__init_package /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7f52c10f9e70 in H5T_init /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7f52c090ee62 in H5_init_library /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7f52c091507c in H5open /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7f52c0893476 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7f52bff9ed86 in __cxx_global_var_init /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7f52bff9ed86 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7f52dab7429d in call_init elf/dl-init.c:74:3 #12 0x7f52dab7429d in call_init elf/dl-init.c:26:1 #13 0x7f52dab7438b in _dl_init elf/dl-init.c:121:5 #14 0x7f52dab71535 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7f52dab7af2d in dl_open_worker elf/dl-open.c:804:5 #16 0x7f52dab714a8 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7f52dab7b2a7 in _dl_open elf/dl-open.c:880:17 #18 0x7f52d9497ed7 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7f52dab714a8 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7f52dab715ce in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7f52d94979e6 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7f52d9497f88 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7f52d9497f88 in dlopen dlfcn/dlopen.c:81:12 #24 0x55a23280e2f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) #25 0x7f52d9d127cf in AddDLL /home/hornik/src/R/src/main/Rdynload.c:855:14 #26 0x7f52d9d11bd7 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1229:12 #27 0x7f52da0ed889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #28 0x7f52da0a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #29 0x7f52da0a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7f52da0aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #31 0x7f52da0a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #32 0x7f52da0a0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #33 0x7f52da0a0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #34 0x7f52da1e4977 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #35 0x7f52da1e7790 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #36 0x7f52da1e75b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #37 0x7f52da1e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #38 0x55a23288ddd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #39 0x7f52d9433d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #40 0x7f52d9433e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #41 0x55a2327aa370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f52c0d62679 in H5I__clear_type_cb /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7f52c10d9127 in H5SL_try_free_safe /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7f52c0d61dd7 in H5I_clear_type /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7f52c110c9a2 in H5T_top_term_package /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7f52c090ff61 in H5_term_library /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7f52c09151a0 in H5close /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7f52c0892fe0 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7f52d944c1a0 in __run_exit_handlers stdlib/exit.c:108:8 #8 0x7f52d944c259 in exit stdlib/exit.c:138:3 #9 0x7f52da5971bc in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #10 0x7f52da5a1417 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7f52da1e75e4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #12 0x7f52da1e75e4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #13 0x7f52da1e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #14 0x55a23288ddd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7f52d9433d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7f52d9433e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x55a2327aa370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7fd667567191 in H5I_dec_ref /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7fd6679339e3 in H5T__path_find_real /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7fd667921faa in H5T__register /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7fd66790a3da in H5T__register_int /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7fd66790106d in H5T__init_package /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7fd6678f9e70 in H5T_init /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7fd66710ee62 in H5_init_library /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7fd66711507c in H5open /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7fd667093476 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7fd66679ed86 in __cxx_global_var_init /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7fd66679ed86 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7fd6813db29d in call_init elf/dl-init.c:74:3 #12 0x7fd6813db29d in call_init elf/dl-init.c:26:1 #13 0x7fd6813db38b in _dl_init elf/dl-init.c:121:5 #14 0x7fd6813d8535 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7fd6813e1f2d in dl_open_worker elf/dl-open.c:804:5 #16 0x7fd6813d84a8 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7fd6813e22a7 in _dl_open elf/dl-open.c:880:17 #18 0x7fd67fc97ed7 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7fd6813d84a8 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7fd6813d85ce in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7fd67fc979e6 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7fd67fc97f88 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7fd67fc97f88 in dlopen dlfcn/dlopen.c:81:12 #24 0x55a06272f2f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) #25 0x7fd6805127cf in AddDLL /home/hornik/src/R/src/main/Rdynload.c:855:14 #26 0x7fd680511bd7 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1229:12 #27 0x7fd6808ed889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #28 0x7fd6808a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #29 0x7fd6808a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7fd6808aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #31 0x7fd6808a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #32 0x7fd6808a0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #33 0x7fd6808a0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #34 0x7fd6809e4977 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #35 0x7fd6809e7790 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #36 0x7fd6809e75b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #37 0x7fd6809e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #38 0x55a0627aedd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #39 0x7fd67fc33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #40 0x7fd67fc33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #41 0x55a0626cb370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7fd667562679 in H5I__clear_type_cb /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7fd6678d9127 in H5SL_try_free_safe /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7fd667561dd7 in H5I_clear_type /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7fd66790c9a2 in H5T_top_term_package /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7fd66710ff61 in H5_term_library /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7fd6671151a0 in H5close /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7fd667092fe0 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7fd67fc4c1a0 in __run_exit_handlers stdlib/exit.c:108:8 #8 0x7fd67fc4c259 in exit stdlib/exit.c:138:3 #9 0x7fd680d971bc in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #10 0x7fd680da1417 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7fd6809e75e4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #12 0x7fd6809e75e4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #13 0x7fd6809e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #14 0x55a0627aedd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7fd67fc33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7fd67fc33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x55a0626cb370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** testing if installed package keeps a record of temporary installation path * DONE (mzR) begin installing package ‘MSnbase’ * installing *source* package ‘MSnbase’ ... ** package ‘MSnbase’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSkX2Ia/R.INSTALL281fca3e3d2114/MSnbase/src' clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Spectrum1_class.c -o Spectrum1_class.o Spectrum1_class.c:8:13: warning: unused function '_new_Spectrum1' [-Wunused-function] 8 | static SEXP _new_Spectrum1(SEXP msLevel, SEXP peaksCount, SEXP rt, | ^~~~~~~~~~~~~~ 1 warning generated. clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Spectrum2_class.c -o Spectrum2_class.o Spectrum2_class.c:9:13: warning: unused function '_new_Spectrum2' [-Wunused-function] 9 | static SEXP _new_Spectrum2(SEXP msLevel, SEXP peaksCount, SEXP rt, | ^~~~~~~~~~~~~~ 1 warning generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c imp_neighbour_avg.cpp -o imp_neighbour_avg.o clang-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o utils.c:92:15: warning: unused variable 'ret' [-Wunused-variable] 92 | int i1, i2, ret; | ^~~ utils.c:107:15: warning: unused variable 'ret' [-Wunused-variable] 107 | int i1, i2, ret; | ^~~ utils.c:123:18: warning: unused variable 'ret' [-Wunused-variable] 123 | double d1, d2, ret; | ^~~ utils.c:133:18: warning: unused variable 'ret' [-Wunused-variable] 133 | double d1, d2, ret; | ^~~ utils.c:121:12: warning: unused function 'compar_double_asc_order' [-Wunused-function] 121 | static int compar_double_asc_order(const void *p1, const void *p2) | ^~~~~~~~~~~~~~~~~~~~~~~ utils.c:131:12: warning: unused function 'compar_double_desc_order' [-Wunused-function] 131 | static int compar_double_desc_order(const void *p1, const void *p2) | ^~~~~~~~~~~~~~~~~~~~~~~~ 6 warnings generated. clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o MSnbase.so RcppExports.o Spectrum1_class.o Spectrum2_class.o imp_neighbour_avg.o utils.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSkX2Ia/R.INSTALL281fca3e3d2114/MSnbase/src' installing to /home/hornik/tmp/CRAN_special_clang-san/Library/00LOCK-MSnbase/00new/MSnbase/libs ** R ** data *** moving datasets to lazyload DB H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7fe15b367191 in H5I_dec_ref /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7fe15b7339e3 in H5T__path_find_real /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7fe15b721faa in H5T__register /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7fe15b70a3da in H5T__register_int /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7fe15b70106d in H5T__init_package /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7fe15b6f9e70 in H5T_init /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7fe15af0ee62 in H5_init_library /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7fe15af1507c in H5open /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7fe15ae93476 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7fe15a59ed86 in __cxx_global_var_init /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7fe15a59ed86 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7fe18900d29d in call_init elf/dl-init.c:74:3 #12 0x7fe18900d29d in call_init elf/dl-init.c:26:1 #13 0x7fe18900d38b in _dl_init elf/dl-init.c:121:5 #14 0x7fe18900a535 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7fe189013f2d in dl_open_worker elf/dl-open.c:804:5 #16 0x7fe18900a4a8 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7fe1890142a7 in _dl_open elf/dl-open.c:880:17 #18 0x7fe187897ed7 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7fe18900a4a8 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7fe18900a5ce in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7fe1878979e6 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7fe187897f88 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7fe187897f88 in dlopen dlfcn/dlopen.c:81:12 #24 0x55d32efdb2f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) #25 0x7fe1881127cf in AddDLL /home/hornik/src/R/src/main/Rdynload.c:855:14 #26 0x7fe188111bd7 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1229:12 #27 0x7fe1884ed889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #28 0x7fe1884a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #29 0x7fe1884a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7fe1884a251f in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #31 0x7fe1884a074e in Rf_eval /home/hornik/src/R/src/main/eval.c:1193:2 #32 0x7fe1884f6cc2 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8016:16 #33 0x7fe1884a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #34 0x7fe1884a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #35 0x7fe1884aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #36 0x7fe1884a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #37 0x7fe1884a0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #38 0x7fe1884a0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #39 0x7fe1887ae001 in R_FindNamespace1 /home/hornik/src/R/src/main/serialize.c:1793:11 #40 0x7fe1887ae001 in ReadItem_Recursive /home/hornik/src/R/src/main/serialize.c:1926:6 #41 0x7fe1887af2d0 in ReadItem /home/hornik/src/R/src/main/serialize.c:2120:12 #42 0x7fe1887af2d0 in ReadItem_Recursive /home/hornik/src/R/src/main/serialize.c:1941:20 #43 0x7fe1887af2d0 in ReadItem /home/hornik/src/R/src/main/serialize.c:2120:12 #44 0x7fe1887af2d0 in ReadItem_Recursive /home/hornik/src/R/src/main/serialize.c:1941:20 #45 0x7fe1887af2d0 in ReadItem /home/hornik/src/R/src/main/serialize.c:2120:12 #46 0x7fe1887af2d0 in ReadItem_Recursive /home/hornik/src/R/src/main/serialize.c:1941:20 #47 0x7fe1887acf64 in ReadItem /home/hornik/src/R/src/main/serialize.c:2120:12 #48 0x7fe1887acf64 in ReadItem_Iterative /home/hornik/src/R/src/main/serialize.c:1837:12 #49 0x7fe1887acf64 in ReadItem_Recursive /home/hornik/src/R/src/main/serialize.c:1963:9 #50 0x7fe1887b198d in ReadItem /home/hornik/src/R/src/main/serialize.c:2120:12 #51 0x7fe1887b198d in ReadItem_Recursive /home/hornik/src/R/src/main/serialize.c:2107:30 #52 0x7fe1887acf64 in ReadItem /home/hornik/src/R/src/main/serialize.c:2120:12 #53 0x7fe1887acf64 in ReadItem_Iterative /home/hornik/src/R/src/main/serialize.c:1837:12 #54 0x7fe1887acf64 in ReadItem_Recursive /home/hornik/src/R/src/main/serialize.c:1963:9 #55 0x7fe18879cff0 in ReadItem /home/hornik/src/R/src/main/serialize.c:2120:12 #56 0x7fe18879cff0 in R_Unserialize /home/hornik/src/R/src/main/serialize.c:2277:12 #57 0x7fe18875b0ce in do_loadFromConn2 /home/hornik/src/R/src/main/saveload.c:2491:25 #58 0x7fe1884ed889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #59 0x7fe1884a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #60 0x7fe1884a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #61 0x7fe1884aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #62 0x7fe1884a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #63 0x7fe1884a0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #64 0x7fe1884a0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #65 0x7fe1885e4977 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #66 0x7fe1885e7790 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #67 0x7fe1885e75b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #68 0x7fe1885e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #69 0x55d32f05add4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #70 0x7fe187833d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #71 0x7fe187833e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #72 0x55d32ef77370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 Creating a new generic function for ‘trimws’ in package ‘MSnbase’ in method for ‘coerce’ with signature ‘"IBSpectra","MSnSet"’: no definition for class “IBSpectra” in method for ‘plotMzDelta’ with signature ‘"mzRramp"’: no definition for class “mzRramp” ** inst ** byte-compile and prepare package for lazy loading H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7fb941767191 in H5I_dec_ref /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7fb941b339e3 in H5T__path_find_real /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7fb941b21faa in H5T__register /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7fb941b0a3da in H5T__register_int /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7fb941b0106d in H5T__init_package /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7fb941af9e70 in H5T_init /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7fb94130ee62 in H5_init_library /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7fb94131507c in H5open /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7fb941293476 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7fb94099ed86 in __cxx_global_var_init /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7fb94099ed86 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7fb95f54729d in call_init elf/dl-init.c:74:3 #12 0x7fb95f54729d in call_init elf/dl-init.c:26:1 #13 0x7fb95f54738b in _dl_init elf/dl-init.c:121:5 #14 0x7fb95f544535 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7fb95f54df2d in dl_open_worker elf/dl-open.c:804:5 #16 0x7fb95f5444a8 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7fb95f54e2a7 in _dl_open elf/dl-open.c:880:17 #18 0x7fb95ddb1ed7 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7fb95f5444a8 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7fb95f5445ce in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7fb95ddb19e6 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7fb95ddb1f88 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7fb95ddb1f88 in dlopen dlfcn/dlopen.c:81:12 #24 0x55ac380ac2f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) #25 0x7fb95e7127cf in AddDLL /home/hornik/src/R/src/main/Rdynload.c:855:14 #26 0x7fb95e711bd7 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1229:12 #27 0x7fb95eaed889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #28 0x7fb95eaa1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #29 0x7fb95eaa061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7fb95eaaad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #31 0x7fb95eaa686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #32 0x7fb95eaa0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #33 0x7fb95eaa0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #34 0x7fb95eaa251f in forcePromise /home/hornik/src/R/src/main/eval.c:976:13 #35 0x7fb95eb3d8af in getvar /home/hornik/src/R/src/main/eval.c:5839:6 #36 0x7fb95eb0d376 in bcEval_loop /home/hornik/src/R/src/main/eval.c:7852:20 #37 0x7fb95eaa1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #38 0x7fb95eaa061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #39 0x7fb95eaaad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #40 0x7fb95eaa686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #41 0x7fb95eaa0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #42 0x7fb95eaa0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #43 0x7fb95ebe4977 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #44 0x7fb95ebe7790 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #45 0x7fb95ebe75b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #46 0x7fb95ebe785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #47 0x55ac3812bdd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #48 0x7fb95dd4dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #49 0x7fb95dd4de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #50 0x55ac38048370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 Creating a new generic function for ‘trimws’ in package ‘MSnbase’ in method for ‘coerce’ with signature ‘"IBSpectra","MSnSet"’: no definition for class “IBSpectra” in method for ‘plotMzDelta’ with signature ‘"mzRramp"’: no definition for class “mzRramp” H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7fb941762679 in H5I__clear_type_cb /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7fb941ad9127 in H5SL_try_free_safe /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7fb941761dd7 in H5I_clear_type /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7fb941b0c9a2 in H5T_top_term_package /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7fb94130ff61 in H5_term_library /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7fb9413151a0 in H5close /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7fb941292fe0 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7fb95dd661a0 in __run_exit_handlers stdlib/exit.c:108:8 #8 0x7fb95dd66259 in exit stdlib/exit.c:138:3 #9 0x7fb95ef971bc in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #10 0x7fb95efa1417 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7fb95ebe75e4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #12 0x7fb95ebe75e4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #13 0x7fb95ebe785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #14 0x55ac3812bdd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7fb95dd4dd67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7fb95dd4de24 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x55ac38048370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7fed4fb67191 in H5I_dec_ref /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7fed4ff339e3 in H5T__path_find_real /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7fed4ff21faa in H5T__register /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7fed4ff0a3da in H5T__register_int /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7fed4ff0106d in H5T__init_package /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7fed4fef9e70 in H5T_init /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7fed4f70ee62 in H5_init_library /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7fed4f71507c in H5open /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7fed4f693476 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7fed4ed9ed86 in __cxx_global_var_init /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7fed4ed9ed86 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7fed6d96f29d in call_init elf/dl-init.c:74:3 #12 0x7fed6d96f29d in call_init elf/dl-init.c:26:1 #13 0x7fed6d96f38b in _dl_init elf/dl-init.c:121:5 #14 0x7fed6d96c535 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7fed6d975f2d in dl_open_worker elf/dl-open.c:804:5 #16 0x7fed6d96c4a8 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7fed6d9762a7 in _dl_open elf/dl-open.c:880:17 #18 0x7fed6c297ed7 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7fed6d96c4a8 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7fed6d96c5ce in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7fed6c2979e6 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7fed6c297f88 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7fed6c297f88 in dlopen dlfcn/dlopen.c:81:12 #24 0x564958dd62f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) #25 0x7fed6cb127cf in AddDLL /home/hornik/src/R/src/main/Rdynload.c:855:14 #26 0x7fed6cb11bd7 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1229:12 #27 0x7fed6ceed889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #28 0x7fed6cea1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #29 0x7fed6cea061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7fed6ceaad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #31 0x7fed6cea686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #32 0x7fed6cea0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #33 0x7fed6cea0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #34 0x7fed6cfe4977 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #35 0x7fed6cfe7790 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #36 0x7fed6cfe75b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #37 0x7fed6cfe785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #38 0x564958e55dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #39 0x7fed6c233d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #40 0x7fed6c233e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #41 0x564958d72370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7fed4fb62679 in H5I__clear_type_cb /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7fed4fed9127 in H5SL_try_free_safe /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7fed4fb61dd7 in H5I_clear_type /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7fed4ff0c9a2 in H5T_top_term_package /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7fed4f70ff61 in H5_term_library /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7fed4f7151a0 in H5close /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7fed4f692fe0 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7fed6c24c1a0 in __run_exit_handlers stdlib/exit.c:108:8 #8 0x7fed6c24c259 in exit stdlib/exit.c:138:3 #9 0x7fed6d3971bc in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #10 0x7fed6d3a1417 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7fed6cfe75e4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #12 0x7fed6cfe75e4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #13 0x7fed6cfe785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #14 0x564958e55dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7fed6c233d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7fed6c233e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x564958d72370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f06b2567191 in H5I_dec_ref /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7f06b29339e3 in H5T__path_find_real /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7f06b2921faa in H5T__register /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7f06b290a3da in H5T__register_int /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7f06b290106d in H5T__init_package /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7f06b28f9e70 in H5T_init /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7f06b210ee62 in H5_init_library /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7f06b211507c in H5open /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7f06b2093476 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7f06b179ed86 in __cxx_global_var_init /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7f06b179ed86 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7f06d043429d in call_init elf/dl-init.c:74:3 #12 0x7f06d043429d in call_init elf/dl-init.c:26:1 #13 0x7f06d043438b in _dl_init elf/dl-init.c:121:5 #14 0x7f06d0431535 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7f06d043af2d in dl_open_worker elf/dl-open.c:804:5 #16 0x7f06d04314a8 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7f06d043b2a7 in _dl_open elf/dl-open.c:880:17 #18 0x7f06cec97ed7 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7f06d04314a8 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7f06d04315ce in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7f06cec979e6 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7f06cec97f88 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7f06cec97f88 in dlopen dlfcn/dlopen.c:81:12 #24 0x55fb79d212f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) #25 0x7f06cf5127cf in AddDLL /home/hornik/src/R/src/main/Rdynload.c:855:14 #26 0x7f06cf511bd7 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1229:12 #27 0x7f06cf8ed889 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8122:14 #28 0x7f06cf8a1ee4 in bcEval /home/hornik/src/R/src/main/eval.c:7505:16 #29 0x7f06cf8a061f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7f06cf8aad75 in R_execClosure /home/hornik/src/R/src/main/eval.c:2393:22 #31 0x7f06cf8a686c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2306:16 #32 0x7f06cf8a0f9f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2328:16 #33 0x7f06cf8a0f9f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #34 0x7f06cf9e4977 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:265:2 #35 0x7f06cf9e7790 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #36 0x7f06cf9e75b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1219:5 #37 0x7f06cf9e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #38 0x55fb79da0dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #39 0x7f06cec33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #40 0x7f06cec33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #41 0x55fb79cbd370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f06b2562679 in H5I__clear_type_cb /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7f06b28d9127 in H5SL_try_free_safe /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7f06b2561dd7 in H5I_clear_type /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7f06b290c9a2 in H5T_top_term_package /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7f06b210ff61 in H5_term_library /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7f06b21151a0 in H5close /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7f06b2092fe0 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7f06cec4c1a0 in __run_exit_handlers stdlib/exit.c:108:8 #8 0x7f06cec4c259 in exit stdlib/exit.c:138:3 #9 0x7f06cfd971bc in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #10 0x7f06cfda1417 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7f06cf9e75e4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #12 0x7f06cf9e75e4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #13 0x7f06cf9e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #14 0x55fb79da0dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7f06cec33d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7f06cec33e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x55fb79cbd370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** testing if installed package keeps a record of temporary installation path * DONE (MSnbase) H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7fe15b362679 in H5I__clear_type_cb /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7fe15b6d9127 in H5SL_try_free_safe /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7fe15b361dd7 in H5I_clear_type /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7fe15b70c9a2 in H5T_top_term_package /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7fe15af0ff61 in H5_term_library /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7fe15af151a0 in H5close /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7fe15ae92fe0 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/RtmpUqB4XG/R.INSTALL2749806de3527e/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7fe18784c1a0 in __run_exit_handlers stdlib/exit.c:108:8 #8 0x7fe18784c259 in exit stdlib/exit.c:138:3 #9 0x7fe1889971bc in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1301:5 #10 0x7fe1889a1417 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7fe1885e75e4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1209:5 #12 0x7fe1885e75e4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1220:5 #13 0x7fe1885e785a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1226:5 #14 0x55d32f05add4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7fe187833d67 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7fe187833e24 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x55d32ef77370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: ce9a0af4806c342e07ea21f487bd9584f1fffacb) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 begin installing package ‘xcms’ make: *** [Makefile:795: xcms.ts] Error 1 make: Target 'all' not remade because of errors. * installing *source* package ‘xcms’ ... ** package ‘xcms’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 19.1.6 (1)’ using C++ compiler: ‘Debian clang version 19.1.6 (1)’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjRnvDk/R.INSTALL28285a164810c6/xcms/src' rm -f massifquant/xcms_massifquant.o massifquant/TrMgr.o massifquant/Tracker.o massifquant/SegProc.o massifquant/DataKeeper.o massifquant/OpOverload.o obiwarp/mat.o obiwarp/vec.o obiwarp/xcms_dynprog.o obiwarp/xcms_lmat.o xcms_obiwarp.o fastMatch.o mzClust_hclust.o mzROI.o util.o xcms.o binners.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c massifquant/xcms_massifquant.cpp -o massifquant/xcms_massifquant.o massifquant/xcms_massifquant.cpp:62:9: error: use of undeclared identifier 'error' 62 | error("Error in scanrange \n"); | ^ massifquant/xcms_massifquant.cpp:115:26: error: use of undeclared identifier 'allocVector'; did you mean 'Rf_allocVector'? 115 | PROTECT(list_names = allocVector(STRSXP, N_NAMES)); | ^~~~~~~~~~~ | Rf_allocVector /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT' 388 | #define PROTECT(s) Rf_protect(s) | ^ /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:1078:10: note: 'Rf_allocVector' declared here 1078 | SEXP Rf_allocVector(SEXPTYPE, R_xlen_t); | ^ massifquant/xcms_massifquant.cpp:117:40: error: use of undeclared identifier 'mkChar' 117 | SET_STRING_ELT(list_names, j, mkChar(names[j])); | ^ massifquant/xcms_massifquant.cpp:119:24: error: use of undeclared identifier 'allocVector'; did you mean 'Rf_allocVector'? 119 | PROTECT(peaklist = allocVector(VECSXP, busybody.getPicCounts())); | ^~~~~~~~~~~ | Rf_allocVector /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT' 388 | #define PROTECT(s) Rf_protect(s) | ^ /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:1078:10: note: 'Rf_allocVector' declared here 1078 | SEXP Rf_allocVector(SEXPTYPE, R_xlen_t); | ^ massifquant/xcms_massifquant.cpp:125:29: error: use of undeclared identifier 'allocVector'; did you mean 'Rf_allocVector'? 125 | PROTECT(entrylist = allocVector(VECSXP, N_NAMES)); | ^~~~~~~~~~~ | Rf_allocVector /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:388:31: note: expanded from macro 'PROTECT' 388 | #define PROTECT(s) Rf_protect(s) | ^ /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:1078:10: note: 'Rf_allocVector' declared here 1078 | SEXP Rf_allocVector(SEXPTYPE, R_xlen_t); | ^ massifquant/xcms_massifquant.cpp:156:9: error: use of undeclared identifier 'setAttrib'; did you mean 'Rf_setAttrib'? 156 | setAttrib(entrylist, R_NamesSymbol, list_names); //attaching the vector names | ^~~~~~~~~ | Rf_setAttrib /home/hornik/tmp/R-d-clang-xtra/include/Rinternals.h:580:6: note: 'Rf_setAttrib' declared here 580 | SEXP Rf_setAttrib(SEXP, SEXP, SEXP); | ^ 6 errors generated. make[1]: *** [/home/hornik/tmp/R-d-clang-xtra/etc/Makeconf:202: massifquant/xcms_massifquant.o] Error 1 make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjRnvDk/R.INSTALL28285a164810c6/xcms/src' ERROR: compilation failed for package ‘xcms’ * removing ‘/home/hornik/tmp/CRAN_special_clang-san/Library/xcms’ Warning in (function (pkgs, lib, repos = getOption("repos"), contriburl = contrib.url(repos, : installation of package ‘xcms’ failed Calls: -> do.call -> checking enviGCMS_0.7.4.tar.gz ... Depends: Package: enviGCMS Depends: R (>= 2.10) Imports: Rdisop, BiocParallel, grDevices, graphics, stats, utils, methods, animation (>= 2.2.3), RColorBrewer, mixtools, data.table, igraph Timings: user system elapsed enviGCMS 115.238 12.191 128.664 Results: Check status summary: ERROR Source packages 1 Check results summary: enviGCMS ... ERROR * checking dependencies in R code ... NOTE * checking examples ... [1s/1s] ERROR