downloading reverse dependencies ... downloading inpdfr_0.1.12.tar.gz ... ok downloading cati_0.99.4.tar.gz ... ok downloading diverse_0.1.5.tar.gz ... ok installing dependencies ‘entropart’, ‘EntropyEstimation’, ‘hypervolume’, ‘metacom’ begin installing package ‘EntropyEstimation’ begin installing package ‘metacom’ begin installing package ‘hypervolume’ * installing *source* package ‘EntropyEstimation’ ... ** package ‘EntropyEstimation’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpO2N2IN/R.INSTALL14d2e74d5488b7/EntropyEstimation/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c EntropEst.c -o EntropEst.o EntropEst.c: In function ‘KlSd’: EntropEst.c:143:25: warning: argument 1 range [18446744056529682424, 18446744073709551608] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 143 | Sigma1 = (double **)malloc(sizeof(double*)*(len-1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from EntropEst.c:7: /usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ EntropEst.c: In function ‘SymSd’: EntropEst.c:243:25: warning: argument 1 range [18446744056529682424, 18446744073709551608] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 243 | Sigma1 = (double **)malloc(sizeof(double*)*(len-1)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here 672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o EntropyEstimation.so EntropEst.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpO2N2IN/R.INSTALL14d2e74d5488b7/EntropyEstimation/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-EntropyEstimation/00new/EntropyEstimation/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EntropyEstimation) begin installing package ‘entropart’ * installing *source* package ‘metacom’ ... ** package ‘metacom’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metacom) * installing *source* package ‘entropart’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (entropart) * installing *source* package ‘hypervolume’ ... ** package ‘hypervolume’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYEqdrq/R.INSTALL14d2e45e7a4dfa/hypervolume/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c convert.cpp -o convert.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fastPdist2.cpp -o fastPdist2.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o hypervolume.so RcppExports.o convert.o fastPdist2.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYEqdrq/R.INSTALL14d2e45e7a4dfa/hypervolume/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-hypervolume/00new/hypervolume/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hypervolume) checking entropart_1.6-15.tar.gz ... checking inpdfr_0.1.12.tar.gz ... checking cati_0.99.4.tar.gz ... checking diverse_0.1.5.tar.gz ... Depends: Package: entropart Imports: ape, EntropyEstimation, ggplot2, ggpubr, graphics, grDevices, parallel, reshape2, rlang, stats, tibble, utils, vegan Timings: user system elapsed entropart 88.821 8.034 98.807 Results: Check status summary: OK Source packages 1 Reverse depends 3 Check results summary: entropart ... OK rdepends_cati ... OK rdepends_diverse ... OK rdepends_inpdfr ... OK