library(testthat) library(enrichit) test_that("TERM2NAME maps GSON term ids to names and falls back to ids", { x <- gson::gson( gsid2gene = data.frame( gsid = c("T1", "T1", "T2", "T3"), gene = c("g1", "g2", "g3", "g4") ), gsid2name = data.frame( gsid = c("T1", "T2"), name = c("Term 1", "Term 2") ) ) res <- enrichit:::TERM2NAME(c("T1", "T3", "T9"), x) expect_type(res, "character") expect_named(res, c("T1", "T3", "T9")) expect_identical(unname(res), c("Term 1", "T3", "T9")) }) test_that("TERMID2EXTID returns genes grouped by requested GSON term ids", { x <- gson::gson( gsid2gene = data.frame( gsid = c("T1", "T1", "T2", "T3"), gene = c("g1", "g2", "g3", "g4") ), gsid2name = data.frame( gsid = c("T1", "T2"), name = c("Term 1", "Term 2") ) ) res <- enrichit:::TERMID2EXTID(c("T2", "T1", "T9"), x) expect_type(res, "list") expect_named(res, c("T2", "T1", "T9")) expect_true(all(vapply(res, is.character, logical(1)))) expect_identical(res$T2, "g3") expect_identical(res$T1, c("g1", "g2")) expect_identical(res$T9, character(0)) })