* using log directory 'd:/RCompile/CRANincoming/R-devel/enmSdmX.Rcheck'
* using R version 4.5.0 alpha (2025-03-24 r88048 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'enmSdmX/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'enmSdmX' version '1.2.12'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [11s] NOTE
Maintainer: 'Adam B. Smith <adam.smith@mobot.org>'

Size of tarball: 12380689 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'enmSdmX' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  '00_getting_started.Rmd' '01_biodiversity_data.Rmd'
  '02_study_region.Rmd' '03_environmental_data.Rmd'
  '04_environmental_data_processing.Rmd'
  '05_matching_biodiversity_data_to_the_environment.Rmd'
  '06_background_sites.Rmd' '07_selecting_predictors.Rmd'
  '08_our_first_sdm.Rmd' '09_maxent.Rmd'
  '10_tuning_maxent_features.Rmd' '11_tuning_maxent_regularization.Rmd'
  '12_bias_correction_i.Rmd' '12_bias_correction_ii.Rmd'
  '13_model_evaluation_metrics.Rmd'
  '14_model_evaluation_cross_validation.Rmd'
  '15_niche_vs_distribution_modeling.Rmd' '16_projecting_models.Rmd'
  '17_other_algorithms.Rmd' '19_sdm_workflow.Rmd'
Package has no Sweave vignette sources and no VignetteBuilder field.
* checking examples ... [25s] OK
* checking package vignettes ... NOTE
Package has 'vignettes' subdirectory but apparently no vignettes.
Perhaps the 'VignetteBuilder' information is missing from the
DESCRIPTION file?
* checking PDF version of manual ... [15s] OK
* checking HTML version of manual ... [11s] OK
* DONE
Status: 1 WARNING, 2 NOTEs