* using log directory ‘/srv/hornik/tmp/CRAN_pretest/enmSdmX.Rcheck’
* using R Under development (unstable) (2025-03-24 r88048)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘enmSdmX/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘enmSdmX’ version ‘1.2.12’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/8s] NOTE
Maintainer: ‘Adam B. Smith <adam.smith@mobot.org>’

Size of tarball: 12380689 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘enmSdmX’ can be installed ... [4s/4s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking whether startup messages can be suppressed ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/10s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
  ‘00_getting_started.Rmd’ ‘01_biodiversity_data.Rmd’
  ‘02_study_region.Rmd’ ‘03_environmental_data.Rmd’
  ‘04_environmental_data_processing.Rmd’
  ‘05_matching_biodiversity_data_to_the_environment.Rmd’
  ‘06_background_sites.Rmd’ ‘07_selecting_predictors.Rmd’
  ‘08_our_first_sdm.Rmd’ ‘09_maxent.Rmd’
  ‘10_tuning_maxent_features.Rmd’ ‘11_tuning_maxent_regularization.Rmd’
  ‘12_bias_correction_i.Rmd’ ‘12_bias_correction_ii.Rmd’
  ‘13_model_evaluation_metrics.Rmd’
  ‘14_model_evaluation_cross_validation.Rmd’
  ‘15_niche_vs_distribution_modeling.Rmd’ ‘16_projecting_models.Rmd’
  ‘17_other_algorithms.Rmd’ ‘19_sdm_workflow.Rmd’
Package has no Sweave vignette sources and no VignetteBuilder field.
* checking examples ... [19s/19s] OK
* checking package vignettes ... NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 2 NOTEs