* using log directory 'd:/RCompile/CRANincoming/R-devel/enmSdmX.Rcheck'
* using R Under development (unstable) (2025-03-12 r87950 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'enmSdmX/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'enmSdmX' version '1.2.12'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [20s] NOTE
Maintainer: 'Adam B. Smith <adam.smith@mobot.org>'

Found the following (possibly) invalid URLs:
  URL: 'http://www.iucnredlist.org/technical-documents/spatial-data'
    From: inst/doc/01_biodiversity_data.html
    Message: Invalid URI scheme
  URL: http://cfcg.forestry.ubc.ca/projects/climate-data/climatebcwna/ (moved to https://cfcg.forestry.ubc.ca/projects/climate-data/climatebcwna/)
    From: inst/doc/03_environmental_data.html
    Status: 301
    Message: Moved Permanently
  URL: http://dx.doi.org//10.1111/ecog.03049 (moved to https://dx.doi.org//10.1111/ecog.03049)
    From: inst/doc/08_our_first_sdm.html
    Status: 301
    Message: Moved Permanently
  URL: http://press.uchicago.edu/ucp/books/book/chicago/M/bo3632297.html (moved to https://press.uchicago.edu/ucp/books/book/chicago/M/bo3632297.html)
    From: inst/doc/07_selecting_predictors.html
    Status: 301
    Message: Moved Permanently
  URL: http://www.dx.doi.org/10.1016/j.ecolmodel.2011.02.011 (moved to https://doi.org/10.1016/j.ecolmodel.2011.02.011)
    From: inst/doc/15_niche_vs_distribution_modeling.html
    Status: 301
    Message: Moved Permanently
  URL: http://www.dx.doi.org/10.1073/pnas.0901637106 (moved to https://doi.org/10.1073/pnas.0901637106)
    From: inst/doc/15_niche_vs_distribution_modeling.html
    Status: 301
    Message: Moved Permanently
  URL: http://www.dx.doi.org/10.1111/j.1365-2656.2008.01390.x (moved to https://doi.org/10.1111/j.1365-2656.2008.01390.x)
    From: inst/doc/17_other_algorithms.html
    Status: 301
    Message: Moved Permanently
  URL: http://www.dx.doi.org/10.1111/j.1461-0248.2007.01107.x (moved to https://doi.org/10.1111/j.1461-0248.2007.01107.x)
    From: inst/doc/15_niche_vs_distribution_modeling.html
    Status: 301
    Message: Moved Permanently
  URL: http://www.dx.doi/org/10.1016/j.tree.2012.03.010
    From: inst/doc/15_niche_vs_distribution_modeling.html
    Status: Error
    Message: Could not resolve hostname [www.dx.doi]: Could not resolve host: www.dx.doi
  URL: http://www.gadm.org/
    From: inst/doc/01_biodiversity_data.html
    Status: Error
    Message: SSL peer certificate or SSH remote key was not OK [www.gadm.org]: schannel: SNI or certificate check failed: SEC_E_WRONG_PRINCIPAL (0x80090322) - Der Zielprinzipalname ist falsch.
  URL: http://www.gbif.org/ (moved to https://www.gbif.org/)
    From: inst/doc/01_biodiversity_data.html
    Status: 301
    Message: Moved Permanently
  URL: http://www.ualberta.ca/~ahamann/data.html (moved to https://sites.ualberta.ca/~ahamann/data.html)
    From: inst/doc/03_environmental_data.html
    Status: 301
    Message: Moved Permanently
  URL: http://www.worldclim.org/ (moved to https://www.worldclim.org/)
    From: inst/doc/04_environmental_data_processing.html
    Status: 301
    Message: Moved Permanently
  URL: http://www.worldclim.org/bioclim (moved to https://www.worldclim.org/bioclim)
    From: inst/doc/03_environmental_data.html
          inst/doc/04_environmental_data_processing.html
          inst/doc/07_selecting_predictors.html
          inst/doc/17_other_algorithms.html
    Status: 301
    Message: Moved Permanently
  URL: https://cran.r-project.org/web/packages/dismo/index.html
    From: inst/doc/17_other_algorithms.html
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: https://doiorg/101017/9781139028271
    From: inst/doc/00_getting_started.html
    Status: Error
    Message: Could not resolve hostname [doiorg]: Could not resolve host: doiorg
  URL: https://doiorg/101111/ecog07346
    From: inst/doc/00_getting_started.html
    Status: Error
    Message: Could not resolve hostname [doiorg]: Could not resolve host: doiorg
The canonical URL of the CRAN page for a package is 
  https://CRAN.R-project.org/package=pkgname
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.

Found the following (possibly) invalid file URI:
  URI: www.eol.org
    From: inst/doc/01_biodiversity_data.html

Size of tarball: 32386457 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'enmSdmX' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'inst/doc' contains invalid file names:
  '00_getting_started.Rmd' '01_biodiversity_data.Rmd'
  '02_study_region.Rmd' '03_environmental_data.Rmd'
  '04_environmental_data_processing.Rmd'
  '05_matching_biodiversity_data_to_the_environment.Rmd'
  '06_background_sites.Rmd' '07_selecting_predictors.Rmd'
  '08_our_first_sdm.Rmd' '09_maxent.Rmd'
  '10_tuning_maxent_features.Rmd' '11_tuning_maxent_regularization.Rmd'
  '12_bias_correction_i.Rmd' '12_bias_correction_ii.Rmd'
  '13_model_evaluation_metrics.Rmd'
  '14_model_evaluation_cross_validation.Rmd'
  '15_niche_vs_distribution_modeling.Rmd' '16_projecting_models.Rmd'
  '17_other_algorithms.Rmd' '19_sdm_workflow.Rmd'
  '00_getting_started.html' '01_biodiversity_data.html'
  '02_study_region.html' '03_environmental_data.html'
  '04_environmental_data_processing.html'
  '05_matching_biodiversity_data_to_the_environment.html'
  '06_background_sites.html' '07_selecting_predictors.html'
  '08_our_first_sdm.html' '09_maxent.html'
  '10_tuning_maxent_features.html'
  '11_tuning_maxent_regularization.html' '12_bias_correction_i.html'
  '12_bias_correction_ii.html' '13_model_evaluation_metrics.html'
  '14_model_evaluation_cross_validation.html'
  '15_niche_vs_distribution_modeling.html' '16_projecting_models.html'
  '17_other_algorithms.html' '19_sdm_workflow.html'
Please remove or rename the files.
See section 'Package subdirectories' in the 'Writing R Extensions'
manual.
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [26s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [15s] OK
* checking HTML version of manual ... [11s] OK
* DONE
Status: 1 WARNING, 1 NOTE