context("Reference grids") pigs.lm = lm(log(conc) ~ source + factor(percent), data = pigs) rg = ref_grid(pigs.lm) rg1 = ref_grid(pigs.lm, at = list(source = "soy", percent = 12)) pigs.lm2 = update(pigs.lm, conc ~ source + percent, data = pigs) rg2 = ref_grid(pigs.lm2) rg2a = ref_grid(pigs.lm2, at = list(source = c("fish", "soy"), percent = 10)) rg2c = ref_grid(pigs.lm2, cov.reduce = FALSE) rg2m = ref_grid(pigs.lm2, cov.reduce = min) pigs.lm3 = update(pigs.lm2, . ~ source + source:factor(percent)) pigs = transform(pigs, sp = interaction(source, percent)) pigs.lm4 = update(pigs.lm2, . ~ source + sp) test_that("Reference grid is constructed correctly", { expect_equal(nrow(rg@grid), 12) expect_equal(nrow(rg1@grid), 1) expect_equal(nrow(rg2@grid), 3) expect_equal(nrow(rg2a@grid), 2) expect_equal(nrow(rg2c@grid), 12) expect_equal(nrow(rg1@grid), 1) expect_equal(length(rg@levels), 2) expect_equal(rg2@levels$percent, mean(pigs$percent)) expect_equal(rg2m@levels$percent, min(pigs$percent)) }) test_that("Reference grid extras are detected", { expect_equal(rg@misc$tran, "log") expect_true(is.null(rg2@misc$tran)) expect_true(is.null(rg2@model.info$nesting)) expect_is(ref_grid(pigs.lm3)@model.info$nesting, "list") # see note above expect_is(ref_grid(pigs.lm4)@model.info$nesting, "list") # see note above }) colnames(ToothGrowth) <- c('len', 'choice of supplement', 'dose') model <- stats::aov(`len` ~ `choice of supplement`, ToothGrowth) test_that("Reference grid handles variables with spaces", { expect_output(str(ref_grid(model, ~`choice of supplement`)), "choice of supplement") }) # models outside of data.frames x = 1:10 y = rnorm(10) mod1 = with(pigs, lm(log(conc) ~ source + factor(percent))) test_that("ref_grid works with no data or subset", { expect_silent(ref_grid(lm(y ~ x))) expect_silent(ref_grid(mod1)) }) # Multivariate models MOats.lm <- lm (yield ~ Block + Variety, data = MOats) MOats.rg <- ref_grid (MOats.lm, mult.levs = list( trt = LETTERS[1:2], dose = as.character(1:2)) ) test_that("We can construct multivariate reference grid", { expect_equal(nrow(MOats.rg@grid), 72) expect_equal(length(MOats.rg@levels), 4) }) MOats.nrg <- ref_grid (MOats.lm, mult.levs = list(nitro = c(0,.2,.4,.6)), at = list(nitro = c(0.0001, .39998, .5))) test_that("Fuzzy matching of numerical mult.levels works", { expect_equal(length(MOats.nrg@levels$nitro), 2) expect_equal(MOats.nrg@levels$nitro, c(0, .4), 0.001) })