downloading reverse dependencies ... downloading ecocomDP_1.3.2.tar.gz ... ok downloading EML_2.0.7.tar.gz ... ok downloading metajam_0.3.1.tar.gz ... ok downloading BeeBDC_1.3.1.tar.gz ... ok downloading geoflow_1.0.0.tar.gz ... ok downloading geometa_0.9.2.tar.gz ... ok installing dependencies ‘atom4R’, ‘bdc’, ‘blastula’, ‘CoordinateCleaner’, ‘d4storagehub4R’, ‘dataone’, ‘datapack’, ‘dataverse’, ‘dotenv’, ‘EML’, ‘emld’, ‘galah’, ‘geometa’, ‘geonapi’, ‘geonode4R’, ‘geosapi’, ‘gsheet’, ‘iNEXT’, ‘neonOS’, ‘neonUtilities’, ‘ocs4R’, ‘ows4R’, ‘rapiclient’, ‘rdflib’, ‘reader’, ‘rgnparser’, ‘sfarrow’, ‘SpadeR’, ‘taxadb’, ‘thredds’, ‘usmap’, ‘zen4R’ also installing the dependencies ‘NCmisc’, ‘usmapdata’, ‘contentid’, ‘potions’ begin installing package ‘NCmisc’ begin installing package ‘usmapdata’ begin installing package ‘contentid’ begin installing package ‘potions’ begin installing package ‘rdflib’ begin installing package ‘emld’ begin installing package ‘neonUtilities’ begin installing package ‘neonOS’ begin installing package ‘CoordinateCleaner’ begin installing package ‘iNEXT’ begin installing package ‘rgnparser’ begin installing package ‘SpadeR’ begin installing package ‘dotenv’ begin installing package ‘sfarrow’ begin installing package ‘geometa’ begin installing package ‘geosapi’ begin installing package ‘geonode4R’ begin installing package ‘gsheet’ begin installing package ‘rapiclient’ begin installing package ‘thredds’ begin installing package ‘datapack’ begin installing package ‘ocs4R’ begin installing package ‘d4storagehub4R’ begin installing package ‘dataverse’ begin installing package ‘blastula’ * installing *source* package ‘gsheet’ ... ** this is package ‘gsheet’ version ‘0.4.6’ ** package ‘gsheet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gsheet) * installing *source* package ‘dotenv’ ... ** this is package ‘dotenv’ version ‘1.0.3’ ** package ‘dotenv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dotenv) * installing *source* package ‘sfarrow’ ... ** this is package ‘sfarrow’ version ‘0.4.1’ ** package ‘sfarrow’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sfarrow) * installing *source* package ‘usmapdata’ ... ** this is package ‘usmapdata’ version ‘1.0.0’ ** package ‘usmapdata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (usmapdata) begin installing package ‘usmap’ * installing *source* package ‘rapiclient’ ... ** this is package ‘rapiclient’ version ‘0.1.8’ ** package ‘rapiclient’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rapiclient) * installing *source* package ‘neonOS’ ... ** this is package ‘neonOS’ version ‘1.1.0’ ** package ‘neonOS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (neonOS) * installing *source* package ‘potions’ ... ** this is package ‘potions’ version ‘0.2.0’ ** package ‘potions’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (potions) begin installing package ‘galah’ * installing *source* package ‘blastula’ ... ** this is package ‘blastula’ version ‘0.3.6’ ** package ‘blastula’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (blastula) * installing *source* package ‘contentid’ ... ** this is package ‘contentid’ version ‘0.0.19’ ** package ‘contentid’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (contentid) begin installing package ‘taxadb’ * installing *source* package ‘rgnparser’ ... ** this is package ‘rgnparser’ version ‘0.3.0’ ** package ‘rgnparser’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rgnparser) * installing *source* package ‘emld’ ... ** this is package ‘emld’ version ‘0.5.2’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (emld) begin installing package ‘EML’ * installing *source* package ‘dataverse’ ... ** this is package ‘dataverse’ version ‘0.3.16’ ** package ‘dataverse’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dataverse) * installing *source* package ‘usmap’ ... ** this is package ‘usmap’ version ‘1.0.0’ ** package ‘usmap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (usmap) * installing *source* package ‘geonode4R’ ... ** this is package ‘geonode4R’ version ‘0.1-2’ ** package ‘geonode4R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geonode4R) * installing *source* package ‘NCmisc’ ... ** this is package ‘NCmisc’ version ‘1.2.0’ ** package ‘NCmisc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NCmisc) begin installing package ‘reader’ * installing *source* package ‘thredds’ ... ** this is package ‘thredds’ version ‘0.1-4’ ** package ‘thredds’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (thredds) * installing *source* package ‘d4storagehub4R’ ... ** this is package ‘d4storagehub4R’ version ‘0.4-5’ ** package ‘d4storagehub4R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (d4storagehub4R) * installing *source* package ‘rdflib’ ... ** this is package ‘rdflib’ version ‘0.2.9’ ** package ‘rdflib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rdflib) begin installing package ‘atom4R’ * installing *source* package ‘ocs4R’ ... ** this is package ‘ocs4R’ version ‘0.3’ ** package ‘ocs4R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ocs4R) * installing *source* package ‘reader’ ... ** this is package ‘reader’ version ‘1.0.6’ ** package ‘reader’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reader) * installing *source* package ‘neonUtilities’ ... ** this is package ‘neonUtilities’ version ‘3.0.2’ ** package ‘neonUtilities’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (neonUtilities) * installing *source* package ‘datapack’ ... ** this is package ‘datapack’ version ‘1.4.2’ ** package ‘datapack’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (datapack) begin installing package ‘dataone’ * installing *source* package ‘taxadb’ ... ** this is package ‘taxadb’ version ‘0.2.1’ ** package ‘taxadb’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (taxadb) * installing *source* package ‘EML’ ... ** this is package ‘EML’ version ‘2.0.7’ ** package ‘EML’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EML) * installing *source* package ‘galah’ ... ** this is package ‘galah’ version ‘2.1.2’ ** package ‘galah’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (galah) * installing *source* package ‘iNEXT’ ... ** this is package ‘iNEXT’ version ‘3.0.2’ ** package ‘iNEXT’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpExHsSh/R.INSTALL2c3b21236b8ef2/iNEXT/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c subfuns.cpp -o subfuns.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o iNEXT.so RcppExports.o subfuns.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpExHsSh/R.INSTALL2c3b21236b8ef2/iNEXT/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-iNEXT/00new/iNEXT/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iNEXT) * installing *source* package ‘dataone’ ... ** this is package ‘dataone’ version ‘2.2.2’ ** package ‘dataone’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dataone) * installing *source* package ‘SpadeR’ ... ** this is package ‘SpadeR’ version ‘0.1.1’ ** package ‘SpadeR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SpadeR) * installing *source* package ‘CoordinateCleaner’ ... ** this is package ‘CoordinateCleaner’ version ‘3.0.1’ ** package ‘CoordinateCleaner’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CoordinateCleaner) begin installing package ‘bdc’ * installing *source* package ‘geosapi’ ... ** this is package ‘geosapi’ version ‘0.7-2’ ** package ‘geosapi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geosapi) * installing *source* package ‘atom4R’ ... ** this is package ‘atom4R’ version ‘0.3-4’ ** package ‘atom4R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (atom4R) begin installing package ‘zen4R’ * installing *source* package ‘bdc’ ... ** this is package ‘bdc’ version ‘1.1.5’ ** package ‘bdc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bdc) * installing *source* package ‘zen4R’ ... ** this is package ‘zen4R’ version ‘0.10.2’ ** package ‘zen4R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zen4R) * installing *source* package ‘geometa’ ... ** this is package ‘geometa’ version ‘0.9.2’ ** package ‘geometa’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘coerce’ with signature ‘"emld","ISOMetadata"’: no definition for class “ISOMetadata” in method for ‘coerce’ with signature ‘"ncdf4","ISOMetadata"’: no definition for class “ISOMetadata” in method for ‘coerce’ with signature ‘"ncdf4","ISOImageryMetadata"’: no definition for class “ISOImageryMetadata” in method for ‘coerce’ with signature ‘"ISOMetadata","emld"’: no definition for class “ISOMetadata” ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location Warning in XML::xmlParse(xsdFile, isSchema = TRUE, xinclude = TRUE, error = function(msg, : NULL value for external reference ** testing if installed package can be loaded from final location Warning in XML::xmlParse(xsdFile, isSchema = TRUE, xinclude = TRUE, error = function(msg, : NULL value for external reference ** testing if installed package keeps a record of temporary installation path * DONE (geometa) begin installing package ‘geonapi’ begin installing package ‘ows4R’ * installing *source* package ‘geonapi’ ... ** this is package ‘geonapi’ version ‘0.8’ ** package ‘geonapi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning message: In XML::xmlParse(xsdFile, isSchema = TRUE, xinclude = TRUE, error = function(msg, : NULL value for external reference ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location Warning in XML::xmlParse(xsdFile, isSchema = TRUE, xinclude = TRUE, error = function(msg, : NULL value for external reference ** testing if installed package can be loaded from final location Warning in XML::xmlParse(xsdFile, isSchema = TRUE, xinclude = TRUE, error = function(msg, : NULL value for external reference ** testing if installed package keeps a record of temporary installation path * DONE (geonapi) * installing *source* package ‘ows4R’ ... ** this is package ‘ows4R’ version ‘0.5’ ** package ‘ows4R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning in XML::xmlParse(xsdFile, isSchema = TRUE, xinclude = TRUE, error = function(msg, : NULL value for external reference ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in XML::xmlParse(xsdFile, isSchema = TRUE, xinclude = TRUE, error = function(msg, : NULL value for external reference ** testing if installed package can be loaded from final location Warning in XML::xmlParse(xsdFile, isSchema = TRUE, xinclude = TRUE, error = function(msg, : NULL value for external reference ** testing if installed package keeps a record of temporary installation path * DONE (ows4R) checking emld_0.5.2.tar.gz ... checking ecocomDP_1.3.2.tar.gz ... checking EML_2.0.7.tar.gz ... checking metajam_0.3.1.tar.gz ... checking BeeBDC_1.3.1.tar.gz ... checking geoflow_1.0.0.tar.gz ... checking geometa_0.9.2.tar.gz ... Depends: Package: emld Depends: R (>= 3.1.0) Imports: xml2, jsonlite, jsonld, methods, yaml Timings: user system elapsed emld 44.316 5.276 52.041 Results: Check status summary: ERROR OK Source packages 0 1 Reverse depends 1 5 Check results summary: emld ... OK rdepends_BeeBDC ... OK rdepends_ecocomDP ... OK rdepends_EML ... OK rdepends_geoflow ... OK rdepends_geometa ... ERROR * checking whether the namespace can be loaded with stated dependencies ... [18s/18s] NOTE * checking tests ... [43s/44s] ERROR rdepends_metajam ... OK