downloading reverse dependencies ... downloading BEDASSLE_1.6.1.tar.gz ... ok downloading CSeQTL_1.0.0.tar.gz ... ok downloading landmulti_0.5.0.tar.gz ... ok downloading metaGE_1.2.2.tar.gz ... ok downloading sequential.pops_0.1.1.tar.gz ... ok downloading SNSequate_1.3-5.tar.gz ... ok downloading spikes_1.1.tar.gz ... ok downloading bbmle_1.0.25.1.tar.gz ... ok downloading epiphy_0.5.0.tar.gz ... ok downloading fitteR_0.2.0.tar.gz ... ok installing dependencies ‘Ake’, ‘ald’, ‘benchden’, ‘bridgedist’, ‘Davies’, ‘DiscreteInverseWeibull’, ‘DiscreteLaplace’, ‘DiscreteWeibull’, ‘emdbook’, ‘emdist’, ‘emg’, ‘equate’, ‘evir’, ‘ExtDist’, ‘extremefit’, ‘FAdist’, ‘FatTailsR’, ‘fExtremes’, ‘gambin’, ‘gb’, ‘GenBinomApps’, ‘GLDEX’, ‘glogis’, ‘GSM’, ‘HelpersMG’, ‘hermite’, ‘HyperbolicDist’, ‘KScorrect’, ‘landpred’, ‘loglognorm’, ‘marg’, ‘MatrixEQTL’, ‘minimax’, ‘nCDunnett’, ‘NMOF’, ‘NormalLaplace’, ‘normalp’, ‘ParetoPosStable’, ‘PearsonDS’, ‘poistweedie’, ‘polyaAeppli’, ‘qmap’, ‘qqman’, ‘QRM’, ‘ReIns’, ‘reliaR’, ‘Renext’, ‘RMKdiscrete’, ‘RMTstat’, ‘sadists’, ‘skellam’, ‘skewt’, ‘smarter’, ‘SMR’, ‘STAR’, ‘trapezoid’, ‘VarianceGamma’ Warning: packages ‘nCDunnett’, ‘reliaR’, ‘STAR’ are not available for this version of R Versions of these packages for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependency ‘PDQutils’ begin installing package ‘PDQutils’ begin installing package ‘smarter’ begin installing package ‘MatrixEQTL’ begin installing package ‘HelpersMG’ begin installing package ‘landpred’ begin installing package ‘qqman’ begin installing package ‘NMOF’ begin installing package ‘Ake’ begin installing package ‘equate’ begin installing package ‘emdist’ begin installing package ‘benchden’ begin installing package ‘ald’ begin installing package ‘bridgedist’ begin installing package ‘Davies’ begin installing package ‘DiscreteInverseWeibull’ begin installing package ‘DiscreteLaplace’ begin installing package ‘DiscreteWeibull’ begin installing package ‘emg’ begin installing package ‘evir’ begin installing package ‘ExtDist’ begin installing package ‘extremefit’ begin installing package ‘FAdist’ begin installing package ‘FatTailsR’ begin installing package ‘fExtremes’ begin installing package ‘gambin’ begin installing package ‘gb’ begin installing package ‘GenBinomApps’ begin installing package ‘GLDEX’ * installing *source* package ‘bridgedist’ ... ** this is package ‘bridgedist’ version ‘0.1.3’ ** package ‘bridgedist’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bridgedist) begin installing package ‘glogis’ * installing *source* package ‘ald’ ... ** this is package ‘ald’ version ‘1.3.1’ ** package ‘ald’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ald) begin installing package ‘GSM’ * installing *source* package ‘emg’ ... ** this is package ‘emg’ version ‘1.0.9’ ** package ‘emg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (emg) begin installing package ‘hermite’ * installing *source* package ‘GenBinomApps’ ... ** this is package ‘GenBinomApps’ version ‘1.2.1’ ** package ‘GenBinomApps’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenBinomApps) begin installing package ‘HyperbolicDist’ * installing *source* package ‘qqman’ ... ** this is package ‘qqman’ version ‘0.1.9’ ** package ‘qqman’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qqman) begin installing package ‘KScorrect’ * installing *source* package ‘FAdist’ ... ** this is package ‘FAdist’ version ‘2.4’ ** package ‘FAdist’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FAdist) begin installing package ‘loglognorm’ * installing *source* package ‘Davies’ ... ** this is package ‘Davies’ version ‘1.2-1’ ** package ‘Davies’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Davies) begin installing package ‘marg’ * installing *source* package ‘DiscreteLaplace’ ... ** this is package ‘DiscreteLaplace’ version ‘1.1.1’ ** package ‘DiscreteLaplace’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DiscreteLaplace) begin installing package ‘minimax’ * installing *source* package ‘PDQutils’ ... ** this is package ‘PDQutils’ version ‘0.1.6’ ** package ‘PDQutils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PDQutils) begin installing package ‘NormalLaplace’ * installing *source* package ‘Ake’ ... ** this is package ‘Ake’ version ‘1.0.2’ ** package ‘Ake’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Ake) begin installing package ‘normalp’ * installing *source* package ‘gambin’ ... ** this is package ‘gambin’ version ‘2.5.0’ ** package ‘gambin’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gambin) begin installing package ‘ParetoPosStable’ * installing *source* package ‘DiscreteInverseWeibull’ ... ** this is package ‘DiscreteInverseWeibull’ version ‘1.0.2’ ** package ‘DiscreteInverseWeibull’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DiscreteInverseWeibull) begin installing package ‘PearsonDS’ * installing *source* package ‘emdist’ ... ** this is package ‘emdist’ version ‘0.3-3’ ** package ‘emdist’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiPImgQ/R.INSTALLa27a8bbc2d8/emdist/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dummy.c -o dummy.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c emd-r.c -o emd-r.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c emd-rubner.c -o emd-rubner.o emd-rubner.c: In function ‘emd_rubner’: emd-rubner.c:810:20: warning: ‘minI’ may be used uninitialized [-Wmaybe-uninitialized] 810 | int i, j, found, minI, minJ; | ^~~~ emd-rubner.c:810:26: warning: ‘minJ’ may be used uninitialized [-Wmaybe-uninitialized] 810 | int i, j, found, minI, minJ; | ^~~~ In function ‘addBasicVariable’, inlined from ‘russel’ at emd-rubner.c:903:7, inlined from ‘init’ at emd-rubner.c:451:3, inlined from ‘emd_rubner’ at emd-rubner.c:205:7: emd-rubner.c:1010:21: warning: ‘PrevVMinJ’ may be used uninitialized [-Wmaybe-uninitialized] 1010 | PrevVMinJ->Next = PrevVMinJ->Next->Next; /* REMOVE COLUMN FROM LIST */ | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ emd-rubner.c: In function ‘emd_rubner’: emd-rubner.c:814:36: note: ‘PrevVMinJ’ was declared here 814 | node1_t *PrevUMinI = PrevUMinI, *PrevVMinJ, *Remember; | ^~~~~~~~~ In function ‘isOptimal’, inlined from ‘emd_rubner’ at emd-rubner.c:220:8: emd-rubner.c:626:15: warning: ‘minI’ may be used uninitialized [-Wmaybe-uninitialized] 626 | _EnterX->i = minI; | ~~~~~~~~~~~^~~~~~ emd-rubner.c: In function ‘emd_rubner’: emd-rubner.c:602:13: note: ‘minI’ was declared here 602 | int i, j, minI, minJ; | ^~~~ In function ‘isOptimal’, inlined from ‘emd_rubner’ at emd-rubner.c:220:8: emd-rubner.c:627:15: warning: ‘minJ’ may be used uninitialized [-Wmaybe-uninitialized] 627 | _EnterX->j = minJ; | ~~~~~~~~~~~^~~~~~ emd-rubner.c: In function ‘emd_rubner’: emd-rubner.c:602:19: note: ‘minJ’ was declared here 602 | int i, j, minI, minJ; | ^~~~ In function ‘newSol’, inlined from ‘emd_rubner’ at emd-rubner.c:224:4: emd-rubner.c:690:8: warning: ‘LeaveX’ may be used uninitialized [-Wmaybe-uninitialized] 690 | if (_RowsX[i] == LeaveX) | ^ emd-rubner.c: In function ‘emd_rubner’: emd-rubner.c:645:21: note: ‘LeaveX’ was declared here 645 | node2_t *CurX, *LeaveX; | ^~~~~~ emd-rubner.c:254:23: warning: ‘FlowP’ may be used uninitialized [-Wmaybe-uninitialized] 254 | FlowP->from = XP->i; | ~~~~~~~~~~~~^~~~~~~ emd-rubner.c:197:11: note: ‘FlowP’ was declared here 197 | flow_t *FlowP; | ^~~~~ gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o emdist.so dummy.o emd-r.o emd-rubner.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiPImgQ/R.INSTALLa27a8bbc2d8/emdist/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-emdist/00new/emdist/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (emdist) begin installing package ‘poistweedie’ * installing *source* package ‘DiscreteWeibull’ ... ** this is package ‘DiscreteWeibull’ version ‘1.1’ ** package ‘DiscreteWeibull’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DiscreteWeibull) begin installing package ‘polyaAeppli’ * installing *source* package ‘loglognorm’ ... ** this is package ‘loglognorm’ version ‘1.0.2’ ** package ‘loglognorm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpG5GmIT/R.INSTALLa5ee153278b1/loglognorm/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c loglognorm.c -o loglognorm.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o loglognorm.so loglognorm.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpG5GmIT/R.INSTALLa5ee153278b1/loglognorm/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-loglognorm/00new/loglognorm/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (loglognorm) begin installing package ‘qmap’ * installing *source* package ‘benchden’ ... ** this is package ‘benchden’ version ‘1.0.8’ ** package ‘benchden’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (benchden) begin installing package ‘QRM’ * installing *source* package ‘minimax’ ... ** this is package ‘minimax’ version ‘1.1.1’ ** package ‘minimax’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (minimax) begin installing package ‘ReIns’ * installing *source* package ‘glogis’ ... ** this is package ‘glogis’ version ‘1.0-2’ ** package ‘glogis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glogis) begin installing package ‘Renext’ * installing *source* package ‘gb’ ... ** this is package ‘gb’ version ‘2.3.3’ ** package ‘gb’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpF74nxc/R.INSTALLa2c753f22848/gb/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ARL.c -o ARL.o ARL.c: In function ‘arl0’: ARL.c:141:9: warning: ‘xa1’ may be used uninitialized [-Wmaybe-uninitialized] 141 | xa1 += dK; | ~~~~^~~~~ ARL.c:79:37: note: ‘xa1’ was declared here 79 | double xa=0.00001, xb=0.99999, xc,xa1,xb1; | ^~~ ARL.c:140:14: warning: ‘xb1’ may be used uninitialized [-Wmaybe-uninitialized] 140 | dK = (xb1-xa1)*0.05; | ~~~~^~~~~ ARL.c:79:41: note: ‘xb1’ was declared here 79 | double xa=0.00001, xb=0.99999, xc,xa1,xb1; | ^~~ ARL.c:132:14: warning: ‘K0’ may be used uninitialized [-Wmaybe-uninitialized] 132 | lcl[0] = K0; | ~~~~~~~^~~~ ARL.c:81:29: note: ‘K0’ was declared here 81 | double delta,dK,dmin=99.0,K0,A0,ARL0=lcl[0]; | ^~ ARL.c:133:17: warning: ‘A0’ may be used uninitialized [-Wmaybe-uninitialized] 133 | lambda[0] = A0; | ~~~~~~~~~~^~~~ ARL.c:81:32: note: ‘A0’ was declared here 81 | double delta,dK,dmin=99.0,K0,A0,ARL0=lcl[0]; | ^~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gbd.c -o gbd.o gbd.c: In function ‘FitGBDMom’: gbd.c:200:7: warning: ‘mt1’ may be used uninitialized [-Wmaybe-uninitialized] 200 | mt1 /= n; | ~~~~^~~~ gbd.c:185:10: note: ‘mt1’ was declared here 185 | double mt1,mt2,mt3,mt4; | ^~~ gbd.c:211:7: warning: ‘mt2’ may be used uninitialized [-Wmaybe-uninitialized] 211 | mt2 /= n; | ~~~~^~~~ gbd.c:185:14: note: ‘mt2’ was declared here 185 | double mt1,mt2,mt3,mt4; | ^~~ gbd.c:212:12: warning: ‘mt3’ may be used uninitialized [-Wmaybe-uninitialized] 212 | mt3 = mt3/pow(mt2,1.5)/n; | ~~~^~~~~~~~~~~~~ gbd.c:185:18: note: ‘mt3’ was declared here 185 | double mt1,mt2,mt3,mt4; | ^~~ gbd.c:213:12: warning: ‘mt4’ may be used uninitialized [-Wmaybe-uninitialized] 213 | mt4 = mt4/pow(mt2,2.)/n; | ~~~^~~~~~~~~~~~ gbd.c:185:22: note: ‘mt4’ was declared here 185 | double mt1,mt2,mt3,mt4; | ^~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gld.c -o gld.o gld.c: In function ‘GLDMoP’: gld.c:497:13: warning: variable ‘k’ set but not used [-Wunused-but-set-variable] 497 | int i, j, k, igrid, jgrid; | ^ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o gb.so ARL.o gbd.o gld.o init.o -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpF74nxc/R.INSTALLa2c753f22848/gb/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-gb/00new/gb/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gb) begin installing package ‘RMKdiscrete’ * installing *source* package ‘GSM’ ... ** this is package ‘GSM’ version ‘1.3.2’ ** package ‘GSM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GSM) begin installing package ‘RMTstat’ * installing *source* package ‘MatrixEQTL’ ... ** this is package ‘MatrixEQTL’ version ‘2.3’ ** package ‘MatrixEQTL’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MatrixEQTL) begin installing package ‘skellam’ * installing *source* package ‘evir’ ... ** this is package ‘evir’ version ‘1.7-4’ ** package ‘evir’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (evir) begin installing package ‘skewt’ * installing *source* package ‘KScorrect’ ... ** this is package ‘KScorrect’ version ‘1.4.0’ ** package ‘KScorrect’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (KScorrect) begin installing package ‘SMR’ * installing *source* package ‘NormalLaplace’ ... ** this is package ‘NormalLaplace’ version ‘0.3-2’ ** package ‘NormalLaplace’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NormalLaplace) begin installing package ‘trapezoid’ * installing *source* package ‘polyaAeppli’ ... ** this is package ‘polyaAeppli’ version ‘2.0.2’ ** package ‘polyaAeppli’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (polyaAeppli) begin installing package ‘VarianceGamma’ * installing *source* package ‘hermite’ ... ** this is package ‘hermite’ version ‘1.1.2’ ** package ‘hermite’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hermite) * installing *source* package ‘equate’ ... ** this is package ‘equate’ version ‘2.0.8’ ** package ‘equate’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (equate) begin installing package ‘emdbook’ begin installing package ‘sadists’ * installing *source* package ‘extremefit’ ... ** this is package ‘extremefit’ version ‘1.0.3’ ** package ‘extremefit’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (extremefit) * installing *source* package ‘ExtDist’ ... ** this is package ‘ExtDist’ version ‘0.7-3’ ** package ‘ExtDist’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ExtDist) * installing *source* package ‘normalp’ ... ** this is package ‘normalp’ version ‘0.7.2.1’ ** package ‘normalp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (normalp) * installing *source* package ‘poistweedie’ ... ** this is package ‘poistweedie’ version ‘1.0.2’ ** package ‘poistweedie’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (poistweedie) * installing *source* package ‘ParetoPosStable’ ... ** this is package ‘ParetoPosStable’ version ‘1.1’ ** package ‘ParetoPosStable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ParetoPosStable) * installing *source* package ‘skewt’ ... ** this is package ‘skewt’ version ‘1.0’ ** package ‘skewt’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (skewt) * installing *source* package ‘landpred’ ... ** this is package ‘landpred’ version ‘1.2’ ** package ‘landpred’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (landpred) * installing *source* package ‘skellam’ ... ** this is package ‘skellam’ version ‘0.2.4’ ** package ‘skellam’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (skellam) * installing *source* package ‘RMTstat’ ... ** this is package ‘RMTstat’ version ‘0.3.1’ ** package ‘RMTstat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RMTstat) * installing *source* package ‘trapezoid’ ... ** this is package ‘trapezoid’ version ‘2.0-2’ ** package ‘trapezoid’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkeEN7C/R.INSTALLac0243708382/trapezoid/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c trapezoid.c -o trapezoid.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c trapezoif_init.c -o trapezoif_init.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o trapezoid.so trapezoid.o trapezoif_init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkeEN7C/R.INSTALLac0243708382/trapezoid/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-trapezoid/00new/trapezoid/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (trapezoid) * installing *source* package ‘NMOF’ ... ** this is package ‘NMOF’ version ‘2.10-1’ ** package ‘NMOF’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NMOF) * installing *source* package ‘sadists’ ... ** this is package ‘sadists’ version ‘0.2.5’ ** package ‘sadists’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sadists) * installing *source* package ‘HyperbolicDist’ ... ** this is package ‘HyperbolicDist’ version ‘0.6-5’ ** package ‘HyperbolicDist’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HyperbolicDist) * installing *source* package ‘RMKdiscrete’ ... ** this is package ‘RMKdiscrete’ version ‘0.2’ ** package ‘RMKdiscrete’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXbD3Qz/R.INSTALLaaa7679d5838/RMKdiscrete/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c LGP.c -o LGP.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c biLGP.c -o biLGP.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c binegbin.c -o binegbin.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c careful.c -o careful.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RMKdiscrete.so LGP.o biLGP.o binegbin.o careful.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXbD3Qz/R.INSTALLaaa7679d5838/RMKdiscrete/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RMKdiscrete/00new/RMKdiscrete/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RMKdiscrete) * installing *source* package ‘VarianceGamma’ ... ** this is package ‘VarianceGamma’ version ‘0.4-2’ ** package ‘VarianceGamma’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (VarianceGamma) * installing *source* package ‘GLDEX’ ... ** this is package ‘GLDEX’ version ‘2.0.0.9.4’ ** package ‘GLDEX’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpf88Vdm/R.INSTALLa2c968fc2cfd/GLDEX/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c GLDEX.c -o GLDEX.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c GLDEX_init.c -o GLDEX_init.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o GLDEX.so GLDEX.o GLDEX_init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpf88Vdm/R.INSTALLa2c968fc2cfd/GLDEX/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-GLDEX/00new/GLDEX/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GLDEX) * installing *source* package ‘FatTailsR’ ... ** this is package ‘FatTailsR’ version ‘2.0.0’ ** package ‘FatTailsR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FatTailsR) * installing *source* package ‘marg’ ... ** this is package ‘marg’ version ‘1.2-4’ ** package ‘marg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (marg) * installing *source* package ‘PearsonDS’ ... ** this is package ‘PearsonDS’ version ‘1.3.2’ ** package ‘PearsonDS’ successfully unpacked and MD5 sums checked ** using staged installation checking whether x86 FPU control code is needed... yes checking for gcc... gcc-14 -std=gnu23 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-14 -std=gnu23 accepts -g... yes checking for gcc-14 -std=gnu23 option to enable C11 features... none needed checking for usable _FPU_SETCW... yes checking for usable fpsetprec... no checking for usable _controlfp... no checking for usable _controlfp_s... no checking whether FPU control word can be manipulated by inline assembler... yes configure: creating ./config.status config.status: creating src/config.h ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoBeDJe/R.INSTALLa72d7830c075/PearsonDS/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Complex.c -o Complex.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DoubleDouble.c -o DoubleDouble.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c F21.c -o F21.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c F21DD.c -o F21DD.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c F21QD.c -o F21QD.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c QuadDouble.c -o QuadDouble.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pearson.c -o pearson.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pearsonIV.c -o pearsonIV.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o PearsonDS.so Complex.o DoubleDouble.o F21.o F21DD.o F21QD.o QuadDouble.o pearson.o pearsonIV.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoBeDJe/R.INSTALLa72d7830c075/PearsonDS/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-PearsonDS/00new/PearsonDS/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PearsonDS) * installing *source* package ‘qmap’ ... ** this is package ‘qmap’ version ‘1.0-6’ ** package ‘qmap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qmap) * installing *source* package ‘emdbook’ ... ** this is package ‘emdbook’ version ‘1.3.14’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (emdbook) * installing *source* package ‘fExtremes’ ... ** this is package ‘fExtremes’ version ‘4032.84’ ** package ‘fExtremes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fExtremes) * installing *source* package ‘SMR’ ... ** this is package ‘SMR’ version ‘2.1.0’ ** package ‘SMR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2XJBof/R.INSTALLaba950ef3166/SMR/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gausslegendre.cpp -o gausslegendre.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o SMR.so RcppExports.o gausslegendre.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2XJBof/R.INSTALLaba950ef3166/SMR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-SMR/00new/SMR/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SMR) * installing *source* package ‘Renext’ ... ** this is package ‘Renext’ version ‘3.1-4’ ** package ‘Renext’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Renext) * installing *source* package ‘HelpersMG’ ... ** this is package ‘HelpersMG’ version ‘6.6’ ** package ‘HelpersMG’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HelpersMG) * installing *source* package ‘smarter’ ... ** this is package ‘smarter’ version ‘1.0.1’ ** package ‘smarter’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpORNw68/R.INSTALLa2894c852028/smarter/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c smarter.cpp -o smarter.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o smarter.so RcppExports.o smarter.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpORNw68/R.INSTALLa2894c852028/smarter/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-smarter/00new/smarter/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (smarter) * installing *source* package ‘QRM’ ... ** this is package ‘QRM’ version ‘0.4-35’ ** package ‘QRM’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPPqEJX/R.INSTALLa9be92780c3/QRM/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c QRM.cpp -o QRM.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o QRM.so QRM.o RcppExports.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPPqEJX/R.INSTALLa9be92780c3/QRM/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-QRM/00new/QRM/libs ** R ** data *** moving datasets to lazyload DB ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (QRM) * installing *source* package ‘ReIns’ ... ** this is package ‘ReIns’ version ‘1.0.15’ ** package ‘ReIns’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5rCKD3/R.INSTALLa9f2feaeab4/ReIns/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c STDF.cpp -o STDF.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c SpliceEM.cpp -o SpliceEM.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c SpliceEM_Estep.cpp -o SpliceEM_Estep.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c SpliceEM_Mstep.cpp -o SpliceEM_Mstep.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS -fpic -g -O2 -Wall -pedantic -mtune=native -c SpliceEM_aux.cpp -o SpliceEM_aux.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ReIns.so RcppExports.o STDF.o SpliceEM.o SpliceEM_Estep.o SpliceEM_Mstep.o SpliceEM_aux.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5rCKD3/R.INSTALLa9f2feaeab4/ReIns/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ReIns/00new/ReIns/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ReIns) checking emdbook_1.3.14.tar.gz ... checking BEDASSLE_1.6.1.tar.gz ... checking CSeQTL_1.0.0.tar.gz ... checking landmulti_0.5.0.tar.gz ... checking metaGE_1.2.2.tar.gz ... checking sequential.pops_0.1.1.tar.gz ... checking SNSequate_1.3-5.tar.gz ... checking spikes_1.1.tar.gz ... checking bbmle_1.0.25.1.tar.gz ... checking epiphy_0.5.0.tar.gz ... checking fitteR_0.2.0.tar.gz ... Depends: Package: emdbook Imports: MASS, lattice, plyr, coda, bbmle Timings: user system elapsed emdbook 51.63 4.779 57.386 Results: Check status summary: OK Source packages 1 Reverse depends 10 Check results summary: emdbook ... OK rdepends_bbmle ... OK rdepends_BEDASSLE ... OK rdepends_CSeQTL ... OK rdepends_epiphy ... OK rdepends_fitteR ... OK rdepends_landmulti ... OK rdepends_metaGE ... OK rdepends_sequential.pops ... OK rdepends_SNSequate ... OK rdepends_spikes ... OK Check results changes: Package: BEDASSLE Check: CRAN incoming feasibility Old result: NOTE Package: fitteR Check: CRAN incoming feasibility Old result: NOTE Package: spikes Check: CRAN incoming feasibility Old result: NOTE