downloading reverse dependencies ... downloading btw_1.0.0.tar.gz ... ok downloading chattr_0.3.1.tar.gz ... ok downloading chores_0.2.0.tar.gz ... ok downloading emend_0.1.0.tar.gz ... ok downloading gander_0.1.0.tar.gz ... ok downloading GitAI_0.1.2.tar.gz ... ok downloading mall_0.2.0.tar.gz ... ok downloading mcptools_0.2.0.tar.gz ... ok downloading shinychat_0.2.0.tar.gz ... ok downloading valentine_2025.2.14.tar.gz ... ok downloading vitals_0.1.0.tar.gz ... ok downloading autoslider.core_0.3.1.tar.gz ... ok downloading constructive_1.3.0.tar.gz ... ok downloading lang_0.1.0.tar.gz ... ok downloading mini007_0.2.1.tar.gz ... ok downloading PhenotypeR_0.2.0.tar.gz ... ok downloading ragnar_0.2.1.tar.gz ... ok downloading ReliaGrowR_0.3.tar.gz ... ok downloading statlingua_0.1.0.tar.gz ... ok downloading streamy_0.2.0.tar.gz ... ok downloading tidyllm_0.3.5.tar.gz ... ok downloading tidyprompt_0.2.0.tar.gz ... ok installing dependencies ‘CohortCharacteristics’, ‘CohortConstructor’, ‘CohortSurvival’, ‘connectcreds’, ‘ellmer’, ‘filters’, ‘ggplot2’, ‘GitStats’, ‘IncidencePrevalence’, ‘ISLR2’, ‘mall’, ‘mcptools’, ‘MeasurementDiagnostics’, ‘nestcolor’, ‘officer’, ‘ollamar’, ‘omock’, ‘OmopSketch’, ‘pandoc’, ‘pixarfilms’, ‘pkgsearch’, ‘reactablefmtr’, ‘readr’, ‘rlistings’, ‘S7’, ‘shinychat’, ‘streamy’, ‘tern’, ‘testthat’, ‘tidyjson’, ‘treesitter’, ‘treesitter.r’ begin installing package ‘connectcreds’ begin installing package ‘pkgsearch’ begin installing package ‘pandoc’ begin installing package ‘streamy’ begin installing package ‘treesitter’ begin installing package ‘treesitter.r’ begin installing package ‘GitStats’ begin installing package ‘rlistings’ begin installing package ‘ollamar’ begin installing package ‘filters’ begin installing package ‘pixarfilms’ begin installing package ‘readr’ begin installing package ‘CohortConstructor’ begin installing package ‘reactablefmtr’ begin installing package ‘ISLR2’ begin installing package ‘tidyjson’ begin installing package ‘S7’ begin installing package ‘testthat’ begin installing package ‘officer’ make: *** [Makefile:95: tidyjson.ts] Error 1 * installing *source* package ‘ISLR2’ ... ** this is package ‘ISLR2’ version ‘1.3-2’ ** package ‘ISLR2’ successfully unpacked and MD5 sums checked ** using staged installation ** data *** moving datasets to lazyload DB ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ISLR2) * installing *source* package ‘streamy’ ... ** this is package ‘streamy’ version ‘0.2.0’ ** package ‘streamy’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (streamy) * installing *source* package ‘connectcreds’ ... ** this is package ‘connectcreds’ version ‘0.1.0’ ** package ‘connectcreds’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (connectcreds) * installing *source* package ‘filters’ ... ** this is package ‘filters’ version ‘0.3.1’ ** package ‘filters’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (filters) * installing *source* package ‘ollamar’ ... ** this is package ‘ollamar’ version ‘1.2.2’ ** package ‘ollamar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ollamar) * installing *source* package ‘pandoc’ ... ** this is package ‘pandoc’ version ‘0.2.0’ ** package ‘pandoc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pandoc) * installing *source* package ‘pixarfilms’ ... ** this is package ‘pixarfilms’ version ‘0.2.1’ ** package ‘pixarfilms’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pixarfilms) * installing *source* package ‘treesitter.r’ ... ** this is package ‘treesitter.r’ version ‘1.2.0’ ** package ‘treesitter.r’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjDBf40/R.INSTALL13fb0246ecc904/treesitter.r/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c binding.c -o binding.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c parser.c -o parser.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c scanner.c -o scanner.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o treesitter.r.so binding.o init.o parser.o scanner.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjDBf40/R.INSTALL13fb0246ecc904/treesitter.r/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-treesitter.r/00new/treesitter.r/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (treesitter.r) * installing *source* package ‘pkgsearch’ ... ** this is package ‘pkgsearch’ version ‘3.1.5’ ** package ‘pkgsearch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgsearch) * installing *source* package ‘S7’ ... ** this is package ‘S7’ version ‘0.2.1’ ** package ‘S7’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpX1MZnz/R.INSTALL13fb315a33af07/S7/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c method-dispatch.c -o method-dispatch.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c prop.c -o prop.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o S7.so init.o method-dispatch.o prop.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpX1MZnz/R.INSTALL13fb315a33af07/S7/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-S7/00new/S7/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (S7) begin installing package ‘ellmer’ begin installing package ‘ggplot2’ * installing *source* package ‘rlistings’ ... ** this is package ‘rlistings’ version ‘0.2.12’ ** package ‘rlistings’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlistings) * installing *source* package ‘reactablefmtr’ ... ** this is package ‘reactablefmtr’ version ‘2.0.0’ ** package ‘reactablefmtr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactablefmtr) * installing *source* package ‘CohortConstructor’ ... ** this is package ‘CohortConstructor’ version ‘0.6.0’ ** package ‘CohortConstructor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortConstructor) begin installing package ‘MeasurementDiagnostics’ * installing *source* package ‘MeasurementDiagnostics’ ... ** this is package ‘MeasurementDiagnostics’ version ‘0.1.0’ ** package ‘MeasurementDiagnostics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MeasurementDiagnostics) * installing *source* package ‘ellmer’ ... ** this is package ‘ellmer’ version ‘0.4.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ellmer) begin installing package ‘shinychat’ begin installing package ‘mcptools’ begin installing package ‘mall’ * installing *source* package ‘treesitter’ ... ** this is package ‘treesitter’ version ‘0.3.0’ ** package ‘treesitter’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpbblLhc/R.INSTALL13fb1549678648/treesitter/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./rlang -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tree-sitter/lib/src/lib.c -o tree-sitter/lib/src/lib.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./rlang -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c alloc.c -o alloc.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./rlang -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dyn.c -o dyn.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./rlang -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c external-pointer.c -o external-pointer.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./rlang -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./rlang -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c language.c -o language.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./rlang -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c node.c -o node.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./rlang -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c parser.c -o parser.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./rlang -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c query-matches.c -o query-matches.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./rlang -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c query.c -o query.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./rlang -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rlang.c -o rlang.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./rlang -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tree-cursor.c -o tree-cursor.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./rlang -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tree.c -o tree.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./rlang -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o treesitter.so tree-sitter/lib/src/lib.o alloc.o dyn.o external-pointer.o init.o language.o node.o parser.o query-matches.o query.o rlang.o tree-cursor.o tree.o utils.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpbblLhc/R.INSTALL13fb1549678648/treesitter/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-treesitter/00new/treesitter/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (treesitter) * installing *source* package ‘GitStats’ ... ** this is package ‘GitStats’ version ‘2.3.7’ ** package ‘GitStats’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GitStats) * installing *source* package ‘mcptools’ ... ** this is package ‘mcptools’ version ‘0.2.0’ ** package ‘mcptools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mcptools) * installing *source* package ‘shinychat’ ... ** this is package ‘shinychat’ version ‘0.2.0’ ** package ‘shinychat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinychat) * installing *source* package ‘mall’ ... ** this is package ‘mall’ version ‘0.2.0’ ** package ‘mall’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mall) * installing *source* package ‘officer’ ... ** this is package ‘officer’ version ‘0.7.1’ ** package ‘officer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (officer) * installing *source* package ‘ggplot2’ ... ** this is package ‘ggplot2’ version ‘4.0.1’ ** package ‘ggplot2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggplot2) begin installing package ‘nestcolor’ * installing *source* package ‘nestcolor’ ... ** this is package ‘nestcolor’ version ‘0.1.3’ ** package ‘nestcolor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nestcolor) begin installing package ‘tern’ * installing *source* package ‘testthat’ ... ** this is package ‘testthat’ version ‘3.3.0’ ** package ‘testthat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpqtaSib/R.INSTALL13fb2f26a5f811/testthat/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-catch.cpp -o test-catch.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-example.cpp -o test-example.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-runner.cpp -o test-runner.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o testthat.so init.o test-catch.o test-example.o test-runner.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpqtaSib/R.INSTALL13fb2f26a5f811/testthat/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-testthat/00new/testthat/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (testthat) * installing *source* package ‘readr’ ... ** this is package ‘readr’ version ‘2.1.6’ ** package ‘readr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwOFba8/R.INSTALL13fb1c434ce79e/readr/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Collector.cpp -o Collector.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CollectorGuess.cpp -o CollectorGuess.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Iconv.cpp -o Iconv.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LocaleInfo.cpp -o LocaleInfo.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Reader.cpp -o Reader.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Source.cpp -o Source.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Tokenizer.cpp -o Tokenizer.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TokenizerDelim.cpp -o TokenizerDelim.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TokenizerFwf.cpp -o TokenizerFwf.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c TokenizerWs.cpp -o TokenizerWs.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c connection.cpp -o connection.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c datetime.cpp -o datetime.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c grisu3.c -o grisu3.o grisu3.c: In function ‘double2diy_fp’: grisu3.c:57:23: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 57 | #define CAST_U64(d) (*(uint64_t*)&d) | ^ grisu3.c:209:24: note: in expansion of macro ‘CAST_U64’ 209 | uint64_t u64 = CAST_U64(d); | ^~~~~~~~ grisu3.c: In function ‘grisu3’: grisu3.c:57:23: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 57 | #define CAST_U64(d) (*(uint64_t*)&d) | ^ grisu3.c:304:24: note: in expansion of macro ‘CAST_U64’ 304 | uint64_t u64 = CAST_U64(v); | ^~~~~~~~ grisu3.c: In function ‘dtoa_grisu3’: grisu3.c:57:23: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 57 | #define CAST_U64(d) (*(uint64_t*)&d) | ^ grisu3.c:356:24: note: in expansion of macro ‘CAST_U64’ 356 | uint64_t u64 = CAST_U64(v); | ^~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c parse.cpp -o parse.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c read.cpp -o read.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c type_convert.cpp -o type_convert.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c write.cpp -o write.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/tzdb/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c write_delim.cpp -o write_delim.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o readr.so Collector.o CollectorGuess.o Iconv.o LocaleInfo.o Reader.o Source.o Tokenizer.o TokenizerDelim.o TokenizerFwf.o TokenizerWs.o connection.o cpp11.o datetime.o grisu3.o init.o parse.o read.o type_convert.o write.o write_delim.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwOFba8/R.INSTALL13fb1c434ce79e/readr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-readr/00new/readr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readr) begin installing package ‘CohortCharacteristics’ begin installing package ‘IncidencePrevalence’ begin installing package ‘CohortSurvival’ begin installing package ‘OmopSketch’ begin installing package ‘omock’ * installing *source* package ‘omock’ ... ** this is package ‘omock’ version ‘0.6.0’ ** package ‘omock’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (omock) * installing *source* package ‘CohortSurvival’ ... ** this is package ‘CohortSurvival’ version ‘1.0.3’ ** package ‘CohortSurvival’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortSurvival) * installing *source* package ‘CohortCharacteristics’ ... ** this is package ‘CohortCharacteristics’ version ‘1.0.2’ ** package ‘CohortCharacteristics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortCharacteristics) * installing *source* package ‘OmopSketch’ ... ** this is package ‘OmopSketch’ version ‘0.5.1’ ** package ‘OmopSketch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmopSketch) * installing *source* package ‘IncidencePrevalence’ ... ** this is package ‘IncidencePrevalence’ version ‘1.2.1’ ** package ‘IncidencePrevalence’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IncidencePrevalence) * installing *source* package ‘tern’ ... ** this is package ‘tern’ version ‘0.9.9’ ** package ‘tern’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tern) make: Target 'all' not remade because of errors. * installing *source* package ‘tidyjson’ ... ** this is package ‘tidyjson’ version ‘0.3.2’ ** package ‘tidyjson’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Error: object ‘at_depth’ is not exported by 'namespace:purrr' Execution halted ERROR: lazy loading failed for package ‘tidyjson’ * removing ‘/home/hornik/tmp/CRAN_recheck/Library/tidyjson’ Warning in (function (pkgs, lib, repos = getOption("repos"), contriburl = contrib.url(repos, : installation of package ‘tidyjson’ failed Calls: -> do.call -> checking ellmer_0.4.0.tar.gz ... checking btw_1.0.0.tar.gz ... checking chattr_0.3.1.tar.gz ... checking chores_0.2.0.tar.gz ... checking emend_0.1.0.tar.gz ... checking gander_0.1.0.tar.gz ... checking GitAI_0.1.2.tar.gz ... checking mall_0.2.0.tar.gz ... checking mcptools_0.2.0.tar.gz ... checking shinychat_0.2.0.tar.gz ... checking valentine_2025.2.14.tar.gz ... checking vitals_0.1.0.tar.gz ... checking autoslider.core_0.3.1.tar.gz ... checking constructive_1.3.0.tar.gz ... checking lang_0.1.0.tar.gz ... checking mini007_0.2.1.tar.gz ... checking PhenotypeR_0.2.0.tar.gz ... checking ragnar_0.2.1.tar.gz ... checking ReliaGrowR_0.3.tar.gz ... checking statlingua_0.1.0.tar.gz ... checking streamy_0.2.0.tar.gz ... checking tidyllm_0.3.5.tar.gz ... checking tidyprompt_0.2.0.tar.gz ... Depends: Package: ellmer Depends: R (>= 4.1) Imports: cli, coro (>= 1.1.0), glue, httr2 (>= 1.2.1), jsonlite, later (>= 1.4.0), lifecycle, promises (>= 1.3.1), R6, rlang (>= 1.1.0), S7 (>= 0.2.0), tibble, vctrs Timings: user system elapsed ellmer 157.666 8.195 142.741 Results: Check status summary: ERROR OK Source packages 0 1 Reverse depends 1 21 Check results summary: ellmer ... OK rdepends_autoslider.core ... OK rdepends_btw ... OK rdepends_chattr ... OK rdepends_chores ... OK rdepends_constructive ... OK rdepends_emend ... OK rdepends_gander ... OK rdepends_GitAI ... ERROR * checking tests ... [6s/6s] ERROR rdepends_lang ... OK rdepends_mall ... OK rdepends_mcptools ... OK rdepends_mini007 ... OK rdepends_PhenotypeR ... OK rdepends_ragnar ... OK rdepends_ReliaGrowR ... OK rdepends_shinychat ... OK rdepends_statlingua ... OK rdepends_streamy ... OK rdepends_tidyllm ... OK rdepends_tidyprompt ... OK rdepends_valentine ... OK rdepends_vitals ... OK Check results changes: Package: GitAI Check: tests New result: ERROR