context("tests based on ex1") test_that("identfiability", { data("ex1") expect_true(isIdentified(ex1$amat.cpdag, 6, 10)) expect_true(isIdentified(ex1$amat.cpdag, c(6,7), 10)) expect_true(isIdentified(ex1$amat.cpdag, 7, 9)) expect_false(isIdentified(ex1$amat.cpdag, 5, 10)) expect_false(isIdentified(ex1$amat.cpdag, c(1,3), 9)) }) test_that("estimation", { data("ex1") pairs <- list( list(x=6, y=10), list(x=c(6,7), y=10), list(x=7, y=9), list(x=c(3,4,5), y=8), list(x=c(3,4,5), y=7), list(x=c(3,4,5,6), y=8) ) for (i in 1:length(pairs)) { .x <- pairs[[i]]$x .y <- pairs[[i]]$y truth <- getEffectsFromSEM(ex1$B, .x, .y) est <- estimateEffect(ex1$data, .x, .y, ex1$amat.cpdag, bootstrap=FALSE) err <- sqrt(mean((est - truth)^2)) expect_lt(err, 0.03) } })