R Under development (unstable) (2023-08-05 r84874 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(efdm)
> library(testthat)
> statespace <- expand.grid(a=1:2, b=1:2, vol=1:5)
> state0 <- statespace
> actprob <- statespace
> actprob$test <- 1
> state0$area <- 0
> state0$area[1] <- 1
> 
> 
> act3 <- define_activity("test", c("vol"))
> transprobs(act3) <- data.frame(vol0 = 1:4, vol1=2:5, prob=1)
> expect_error(runEFDM(state0, actprob, list(act3), 5), "States with no activity (in list of activities)", fixed=TRUE)
[1] "States with no activity (in list of activities):"
   vol a b test check___
17   5 1 1    1        0
18   5 2 1    1        0
19   5 1 2    1        0
20   5 2 2    1        0
> expect_error(runEFDM(state0, data.frame(test=1), list(act3), 5), "No state variables in actprob")
> 
> 
> 
> transprobs(act3) <- data.frame(vol0 = 1:5, vol1=c(2:6), prob=1)
> expect_error(runEFDM(state0, actprob, list(act3), 3), "Activity transitions to state not in actprob")
[1] "Activity 'test' caused transitions to state not in actprob:"
   vol  a  b test check___ check_1__
21   6 NA NA   NA       NA        NA
> 
> 
> expect_error(runEFDM(state0, actprob, list(act3, act3), 3), "States with multiple activities")
[1] "States with multiple activities:"
  vol a b test check___ check_1__
1   1 1 1    1        2         1
2   1 2 1    1        2         1
3   1 1 2    1        2         1
4   1 2 2    1        2         1
5   2 1 1    1        2         1
6   2 2 1    1        2         1
> 
> 
> act4 <- define_activity("test2", c("vol"))
> transprobs(act4) <- data.frame(vol0 = 1:5, vol1=c(2:5,5), prob=1)
> expect_error(runEFDM(state0, actprob, list(act4), 5), "Activity probabilities for test2 not given.")
> 
> act5 <- define_activity("test", c("vol"))
> transprobs(act5) <- data.frame(vol0 = 1:6, vol1=2, prob=1)
> expect_error(runEFDM(state0, actprob, list(act5), 5), "Activity transitions from state not in actprob")
[1] "Activity transitions from state not in actprob:"
   vol  a  b test check___
21   6 NA NA   NA       NA
> 
> act6 <- define_activity("test", c("vol"))
> expect_error(runEFDM(state0, actprob, list(act6), 1), "Activity 'test' has no transprobs.")
> transprobs(act6) <- data.frame(vol0 = 1:5, vol1=2, c=1, prob=1)
> expect_error(runEFDM(state0, actprob, list(act6), 1), "Activity 'test' has variable c not in actprob.")
> 
> actprob$test[3] <- NA
> expect_error(runEFDM(state0, actprob, list(act3), 5), "Actprob should not have NAs.")
> 
> actprob$test2 <- actprob$test <- 0.5
> expect_error(runEFDM(state0, actprob, list(act3), 5), "Activity probabilities for test2 given, but activities not.")
> 
> proc.time()
   user  system elapsed 
   1.06    0.10    1.15