downloading reverse dependencies ‘caretSDM’, ‘RRgeo’, ‘wallace’, ‘confcons’, ‘ENMeval’, ‘ENMTools’ trying URL 'file:///data/Repositories/CRAN/src/contrib/caretSDM_1.2.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RRgeo_0.0.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/wallace_2.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/confcons_0.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ENMeval_2.0.5.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ENMTools_1.1.5.tar.gz' installing dependencies ‘adehabitatHS’, ‘Bchron’, ‘BIEN’, ‘biomod2’, ‘CalibratR’, ‘CoordinateCleaner’, ‘ecospat’, ‘ENMeval’, ‘knitcitations’, ‘leastcostpath’, ‘occCite’, ‘pdp’, ‘predicts’, ‘rangeModelMetadata’, ‘ResourceSelection’, ‘rnaturalearthhires’, ‘ROCR’, ‘Rphylopars’, ‘RRphylo’, ‘spocc’, ‘spThin’, ‘usdm’ Warning: package ‘rnaturalearthhires’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘humaniformat’, ‘rebird’, ‘rvertnet’, ‘ridigbio’, ‘bib2df’ begin installing package ‘humaniformat’ begin installing package ‘rebird’ begin installing package ‘rvertnet’ begin installing package ‘ridigbio’ begin installing package ‘biomod2’ begin installing package ‘CoordinateCleaner’ begin installing package ‘usdm’ begin installing package ‘Rphylopars’ begin installing package ‘RRphylo’ begin installing package ‘leastcostpath’ begin installing package ‘Bchron’ begin installing package ‘adehabitatHS’ begin installing package ‘knitcitations’ begin installing package ‘spThin’ begin installing package ‘BIEN’ begin installing package ‘predicts’ begin installing package ‘CalibratR’ begin installing package ‘ResourceSelection’ begin installing package ‘pdp’ begin installing package ‘ROCR’ * installing *source* package ‘ridigbio’ ... ** this is package ‘ridigbio’ version ‘0.4.1’ ** package ‘ridigbio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ridigbio) * installing *source* package ‘leastcostpath’ ... ** this is package ‘leastcostpath’ version ‘2.0.13’ ** package ‘leastcostpath’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leastcostpath) * installing *source* package ‘ROCR’ ... ** this is package ‘ROCR’ version ‘1.0-12’ ** package ‘ROCR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROCR) * installing *source* package ‘spThin’ ... ** this is package ‘spThin’ version ‘0.2.0’ ** package ‘spThin’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spThin) * installing *source* package ‘rebird’ ... ** this is package ‘rebird’ version ‘1.3.0’ ** package ‘rebird’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rebird) * installing *source* package ‘knitcitations’ ... ** this is package ‘knitcitations’ version ‘1.0.12’ ** package ‘knitcitations’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (knitcitations) * installing *source* package ‘ResourceSelection’ ... ** this is package ‘ResourceSelection’ version ‘0.3-6’ ** package ‘ResourceSelection’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ResourceSelection) * installing *source* package ‘rvertnet’ ... ** this is package ‘rvertnet’ version ‘0.8.4’ ** package ‘rvertnet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rvertnet) begin installing package ‘spocc’ * installing *source* package ‘pdp’ ... ** this is package ‘pdp’ version ‘0.8.3’ ** package ‘pdp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7FXgcC/R.INSTALL1dedbc25e72739/pdp/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PartialGBM.cpp -o PartialGBM.o PartialGBM.cpp: In function ‘SEXPREC* PartialGBM(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: PartialGBM.cpp:30:17: warning: variable ‘hr’ set but not used [-Wunused-but-set-variable] 30 | unsigned long hr = 0; | ^~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c in_out.c -o in_out.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pdp-init.c -o pdp-init.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o pdp.so PartialGBM.o in_out.o pdp-init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7FXgcC/R.INSTALL1dedbc25e72739/pdp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pdp/00new/pdp/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pdp) * installing *source* package ‘Bchron’ ... ** this is package ‘Bchron’ version ‘4.7.8’ ** package ‘Bchron’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgMuyZA/R.INSTALL1deda366477c53/Bchron/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Bchron.c -o Bchron.o In file included from Bchron.c:4: Bchron.c: In function ‘dtweedielogwsmallp’: /home/hornik/tmp/R/include/Rmath.h:252:25: warning: ‘*A[0]’ may be used uninitialized [-Wmaybe-uninitialized] 252 | #define fmax2 Rf_fmax2 Bchron.c:100:12: note: in expansion of macro ‘fmax2’ 100 | double m=fmax2(A[0],hij-lowj+1); | ^~~~~ gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Bchron.so Bchron.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgMuyZA/R.INSTALL1deda366477c53/Bchron/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Bchron/00new/Bchron/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Bchron) * installing *source* package ‘adehabitatHS’ ... ** this is package ‘adehabitatHS’ version ‘0.3.18’ ** package ‘adehabitatHS’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOxBum9/R.INSTALL1deda54b3acf21/adehabitatHS/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tests.c -o tests.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o adehabitatHS.so init.o tests.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOxBum9/R.INSTALL1deda54b3acf21/adehabitatHS/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-adehabitatHS/00new/adehabitatHS/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adehabitatHS) * installing *source* package ‘CalibratR’ ... ** this is package ‘CalibratR’ version ‘0.1.2’ ** package ‘CalibratR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CalibratR) * installing *source* package ‘spocc’ ... ** this is package ‘spocc’ version ‘1.2.4’ ** package ‘spocc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spocc) * installing *source* package ‘humaniformat’ ... ** this is package ‘humaniformat’ version ‘0.6.0’ ** package ‘humaniformat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp44NV7N/R.INSTALL1ded8921d2681d/humaniformat/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c human_format.cpp -o human_format.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c human_getset.cpp -o human_getset.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c human_parse.cpp -o human_parse.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c humaniformat.cpp -o humaniformat.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o humaniformat.so RcppExports.o human_format.o human_getset.o human_parse.o humaniformat.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp44NV7N/R.INSTALL1ded8921d2681d/humaniformat/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-humaniformat/00new/humaniformat/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (humaniformat) begin installing package ‘bib2df’ * installing *source* package ‘RRphylo’ ... ** this is package ‘RRphylo’ version ‘3.0.2’ ** package ‘RRphylo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RRphylo) * installing *source* package ‘BIEN’ ... ** this is package ‘BIEN’ version ‘1.2.7’ ** package ‘BIEN’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BIEN) begin installing package ‘rangeModelMetadata’ * installing *source* package ‘bib2df’ ... ** this is package ‘bib2df’ version ‘1.1.2.0’ ** package ‘bib2df’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bib2df) begin installing package ‘occCite’ * installing *source* package ‘CoordinateCleaner’ ... ** this is package ‘CoordinateCleaner’ version ‘3.0.1’ ** package ‘CoordinateCleaner’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CoordinateCleaner) * installing *source* package ‘predicts’ ... ** this is package ‘predicts’ version ‘0.1-19’ ** package ‘predicts’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (predicts) * installing *source* package ‘usdm’ ... ** this is package ‘usdm’ version ‘2.1-7’ ** package ‘usdm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (usdm) * installing *source* package ‘occCite’ ... ** this is package ‘occCite’ version ‘0.6.1’ ** package ‘occCite’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (occCite) * installing *source* package ‘rangeModelMetadata’ ... ** this is package ‘rangeModelMetadata’ version ‘0.1.5’ ** package ‘rangeModelMetadata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rangeModelMetadata) begin installing package ‘ENMeval’ * installing *source* package ‘biomod2’ ... ** this is package ‘biomod2’ version ‘4.3-4-3’ ** package ‘biomod2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘cito’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘mda’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘gam’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘earth’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘maxnet’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘randomForest’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘xgboost’ ** testing if installed package can be loaded from final location Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘cito’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘mda’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘gam’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘earth’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘maxnet’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘randomForest’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘xgboost’ ** testing if installed package keeps a record of temporary installation path * DONE (biomod2) begin installing package ‘ecospat’ * installing *source* package ‘Rphylopars’ ... ** this is package ‘Rphylopars’ version ‘0.3.10’ ** package ‘Rphylopars’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfLq84V/R.INSTALL1ded967e2c735f/Rphylopars/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phylopars_rcpp.cpp -o phylopars_rcpp.o 'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. 'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Rphylopars.so RcppExports.o phylopars_rcpp.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR 'LdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. 'RcppLdFlags' has not been needed since 2013 (!!) and may get removed in 2027. Please update your 'Makevars'. make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfLq84V/R.INSTALL1ded967e2c735f/Rphylopars/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rphylopars/00new/Rphylopars/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rphylopars) * installing *source* package ‘ecospat’ ... ** this is package ‘ecospat’ version ‘4.1.3’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ecospat) * installing *source* package ‘ENMeval’ ... ** this is package ‘ENMeval’ version ‘2.0.5.2’ ** package ‘ENMeval’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ENMeval) checking ecospat_4.1.3.tar.gz ... checking caretSDM_1.2.5.tar.gz ... checking RRgeo_0.0.6.tar.gz ... checking wallace_2.2.0.tar.gz ... checking confcons_0.3.2.tar.gz ... checking ENMeval_2.0.5.2.tar.gz ... checking ENMTools_1.1.5.tar.gz ... Depends: Package: ecospat Depends: R (>= 4.0.0) Imports: ade4 (>= 1.6-2), gbm (>= 2.1.1), foreach (>= 1.4.3),adehabitatHR (>= 0.4.11), adehabitatMA (>= 0.3.8), biomod2 (>= 4.2-6-2), dismo (>= 0.9-3), ecodist (>= 1.2.9), terra (>= 1.8-93), gtools (>= 3.4.1), PresenceAbsence (>= 1.1.9), methods (>= 3.1.1), parallel, classInt (>= 0.1-23), vegan (>= 2.4-1), poibin (>= 1.3), matrixStats (>= 0.53.1), ks (>= 1.12.0), nabor (>= 0.5.0), Hmisc (>= 4.4-2) Timings: user system elapsed ecospat 116.208 6.816 125.881 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 0 6 Check results summary: ecospat ... NOTE * checking examples ... [29s/30s] NOTE rdepends_caretSDM ... OK rdepends_confcons ... OK rdepends_ENMeval ... OK rdepends_ENMTools ... OK rdepends_RRgeo ... OK rdepends_wallace ... OK