* using log directory ‘/home/hornik/tmp/CRAN_special_donttest/ecospat.Rcheck’
* using R Under development (unstable) (2026-01-13 r89301)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-15 (Debian 15.2.0-12) 15.2.0
    GNU Fortran (Debian 15.2.0-12) 15.2.0
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* using option ‘--run-donttest’
* checking for file ‘ecospat/DESCRIPTION’ ... OK
* this is package ‘ecospat’ version ‘4.1.3’
* checking CRAN incoming feasibility ... [5s/6s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ecospat’ can be installed ... [6s/6s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s/13s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [6s/6s] ERROR
Running examples in ‘ecospat-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ecospat.CCV.modeling
> ### Title: Runs indivudual species distribuion models with SDMs or ESMs
> ### Aliases: ecospat.CCV.modeling
> 
> ### ** Examples
> 
> ## No test: 
>   #Loading species occurence data and remove empty communities
>   data(ecospat.testData)
>   testData <- ecospat.testData[,c(24,34,43,45,48,53,55:58)]
>   sp.data <- testData[which(rowSums(testData)>2), sort(colnames(testData))]
>   
>   #Loading environmental data
>   env.data <- ecospat.testData[which(rowSums(testData)>2),4:8]
>   
>   #Coordinates for all sites
>   xy <- ecospat.testData[which(rowSums(testData)>2),2:3]
>   
>   #Running all the models for all species
>   myCCV.Models <- ecospat.CCV.modeling(sp.data = sp.data,
+                                        env.data = env.data,
+                                        xy = xy,
+                                        NbRunEval = 2,
+                                        minNbPredictors = 10,
+                                        VarImport = 3)
The following species will be run with standard biomod2 models: 


The following species will be run with ESM models: Agrostis.capillaris, Campanula.scheuchzeri, Carex.sempervirens, Cynosurus.cristatus, Dactylis.glomerata, Homogyne.alpina, Plantago.lanceolata, Polygonum.viviparum, Rumex.acetosa


The following species will not be modelled due to limited presence data: Galium.anisophyllon



-=-=-=-=-=-=-=-=-=-=-= Agrostis.capillaris Data Formating -=-=-=-=-=-=-=-=-=-=-=

-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Done -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=

-=-=-=-=-=-=-=-=-=-=-=-=-=-= Build Modeling Options -=-=-=-=-=-=-=-=-=-=-=-=-=-=
Error in .bm_ModelingOptions.check.args(data.type = data.type, models = models,  : 
  object 'ModelsTable' not found
Calls: ecospat.CCV.modeling ... <Anonymous> -> .bm_ModelingOptions.check.args -> paste0
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [35s/35s] OK
* checking PDF version of manual ... [5s/5s] OK
* checking HTML version of manual ... [4s/4s] OK
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
  ‘1768299742’
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE