installing dependencies ‘adehabitatHR’, ‘biomod2’, ‘poibin’

begin installing package ‘adehabitatHR’
begin installing package ‘biomod2’
begin installing package ‘poibin’
* installing *source* package ‘poibin’ ...
** this is package ‘poibin’ version ‘1.6’
** package ‘poibin’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-12) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpM9hCJ2/R.INSTALL1bb9de73c9ed3/poibin/src'
gcc-14 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c dftcf.c -o dftcf.o
gcc-14 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c poibin_init.c -o poibin_init.o
gcc-14 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o poibin.so dftcf.o poibin_init.o -L/home/hornik/tmp/R/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpM9hCJ2/R.INSTALL1bb9de73c9ed3/poibin/src'
installing to /home/hornik/tmp/CRAN_special_donttest/Library/00LOCK-poibin/00new/poibin/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (poibin)
* installing *source* package ‘adehabitatHR’ ...
** this is package ‘adehabitatHR’ version ‘0.4.22’
** package ‘adehabitatHR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-12) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmO3nej/R.INSTALL1bb9dc172a6861/adehabitatHR/src'
gcc-14 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-14 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c tests.c -o tests.o
gcc-14 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o adehabitatHR.so init.o tests.o -L/home/hornik/tmp/R/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmO3nej/R.INSTALL1bb9dc172a6861/adehabitatHR/src'
installing to /home/hornik/tmp/CRAN_special_donttest/Library/00LOCK-adehabitatHR/00new/adehabitatHR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (adehabitatHR)
* installing *source* package ‘biomod2’ ...
** this is package ‘biomod2’ version ‘4.2-6-2’
** package ‘biomod2’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading


Checking Models arguments...
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘mda’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘gam’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘earth’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘maxnet’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘randomForest’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘xgboost’
** testing if installed package can be loaded from final location
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘mda’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘gam’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘earth’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘maxnet’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘randomForest’
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘xgboost’
** testing if installed package keeps a record of temporary installation path
* DONE (biomod2)

checking ecospat_4.1.2.tar.gz ...

Depends:
Package: ecospat
  Depends: R (>= 4.0.0)
  Imports: ade4 (>= 1.6-2), gbm (>= 2.1.1), foreach (>=
    1.4.3),adehabitatHR (>= 0.4.11), adehabitatMA (>= 0.3.8), biomod2
    (>= 4.2-6-2), dismo (>= 0.9-3), ecodist (>= 1.2.9), terra (>=
    1.2-5), gtools (>= 3.4.1), PresenceAbsence (>= 1.1.9), methods (>=
    3.1.1), parallel, classInt (>= 0.1-23), vegan (>= 2.4-1), poibin
    (>= 1.3), matrixStats (>= 0.53.1), ks (>= 1.12.0), nabor (>=
    0.5.0), Hmisc (>= 4.4-2)

Timings:
           user system elapsed
ecospat 187.107  8.486 189.084

Results:
Check status summary:
                  NOTE
  Source packages    1

Check results summary:
ecospat ... NOTE
* checking examples ... [111s/103s] NOTE