* using log directory 'd:/RCompile/CRANincoming/R-devel/easynem.Rcheck' * using R Under development (unstable) (2025-10-17 r88928 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'easynem/DESCRIPTION' ... OK * this is package 'easynem' version '1.0.0.9000' * package encoding: UTF-8 * checking CRAN incoming feasibility ... [15s] NOTE Maintainer: 'Wang Kunguang ' New submission Version contains large components (1.0.0.9000) Possibly misspelled words in DESCRIPTION: Nemaplex (7:44) Unknown, possibly misspelled, fields in DESCRIPTION: 'Remotes' The Title field should be in title case. Current version is: 'An R package for nematode community analysis' In title case that is: 'An R Package for Nematode Community Analysis' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'easynem' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [23s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking examples ... [49s] ERROR Running examples in 'easynem-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: nem_plot,ter-method > ### Title: Visualizing the results of the ternary analysis (single factor) > ### Aliases: nem_plot,ter-method > > ### ** Examples > > nem <- read_nem2(tab = nemtab, tax = nemtax, meta = nemmeta) > nem_plot <- nem |> + calc_ter(Treatments) |> + nem_plot(type = feeding) Error in loadNamespace(x) : there is no package called 'Ternary' Calls: nem_plot ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [17s] ERROR Running 'testthat.R' [16s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(easynem) > > test_check("easynem") [ FAIL 2 | WARN 0 | SKIP 0 | PASS 112 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-nem_plot.R:112:3'): nem_plot works for ter-class ─────────────── Error in `loadNamespace(x)`: there is no package called 'Ternary' Backtrace: ▆ 1. ├─easynem::nem_plot(ter, type = feeding) at test-nem_plot.R:112:3 2. ├─easynem::nem_plot(ter, type = feeding) 3. │ └─easynem (local) .local(object, ...) 4. └─base::loadNamespace(x) 5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 6. └─base (local) withOneRestart(expr, restarts[[1L]]) 7. └─base (local) doWithOneRestart(return(expr), restart) ── Error ('test-nem_plot.R:121:3'): nem_plot works for ter2-class ────────────── Error in `loadNamespace(x)`: there is no package called 'Ternary' Backtrace: ▆ 1. ├─easynem::nem_plot(ter2, type = feeding) at test-nem_plot.R:121:3 2. ├─easynem::nem_plot(ter2, type = feeding) 3. │ └─easynem (local) .local(object, ...) 4. └─base::loadNamespace(x) 5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 6. └─base (local) withOneRestart(expr, restarts[[1L]]) 7. └─base (local) doWithOneRestart(return(expr), restart) [ FAIL 2 | WARN 0 | SKIP 0 | PASS 112 ] Error: Test failures Execution halted * checking PDF version of manual ... [18s] WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ∑ (U+2211) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character ∑ (U+2211) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character Σ (U+03A3) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! Package pdftex.def Error: File `geomencircle01.png' not found: using draft se tting. See the pdftex.def package documentation for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ! LaTeX Error: Unicode character μ (U+03BC) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. * checking PDF version of manual without index ... ERROR * checking HTML version of manual ... [14s] OK * DONE Status: 3 ERRORs, 1 WARNING, 1 NOTE