* using log directory ‘/srv/hornik/tmp/CRAN/easybgm.Rcheck’
* using R Under development (unstable) (2023-09-26 r85226)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 16.0.6 (15)
    GNU Fortran (Debian 13.2.0-4) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘easybgm/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘easybgm’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Karoline Huth <k.huth@uva.nl>’

New submission

Possibly misspelled words in DESCRIPTION:
  BDgraph (11:221, 11:416)
  BGGM (11:235)
  Goudriaan (12:154)
  Huth (12:119)
  JASP (12:320)
  Luigjes (12:141)
  Marsman (12:221)
  Mohammadi (12:169)
  PsyArXiv (12:334)
  Wagenmakers (12:199)
  de (12:129)
  textit (12:327)

The Description field should not start with the package name,
  'This package' or similar.
The Description field contains
  \textit{PsyArXiv} https://doi.org/10.31234/osf.io/ub5tc.
Please enclose URLs in angle brackets (<...>).
The Description field contains
  \textit{PsyArXiv} https://doi.org/10.31234/osf.io/ub5tc.
Please write DOIs as <doi:prefix/suffix>.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘easybgm’ can be installed ... [8s/8s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  ‘README.Rmd’ ‘readme_plots’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
bgm_fit:
  function(x, ...)
bgm_fit.package_bdgraph:
  function(fit, type, data, iter, save, not_cont, centrality, progress,
           ...)

bgm_fit:
  function(x, ...)
bgm_fit.package_bgms:
  function(fit, type, data, iter, save, not_cont, centrality, progress,
           ...)

bgm_fit:
  function(x, ...)
bgm_fit.package_bggm:
  function(fit, type, data, iter, save, not_cont, centrality, progress,
           ...)
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/11s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [4s/4s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [4s/4s] OK
  Running ‘testthat.R’ [3s/3s]
* checking PDF version of manual ... [3s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs