* using log directory ‘/srv/hornik/tmp/CRAN/easyPubMed.Rcheck’ * using R Under development (unstable) (2023-12-02 r85657) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.5 (1) Debian flang-new version 17.0.5 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘easyPubMed/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘easyPubMed’ version ‘3.03’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/5s] NOTE Maintainer: ‘Damiano Fantini ’ Version contains leading zeroes (3.03) Found the following (possibly) invalid URLs: URL: https://www.ncbi.nlm.nih.gov/pubmed/ (moved to https://pubmed.ncbi.nlm.nih.gov/) From: inst/doc/easyPubMed_demo.html Status: 301 Message: Moved Permanently For content that is 'Moved Permanently', please change http to https, add trailing slashes, or replace the old by the new URL. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘easyPubMed’ can be installed ... [3s/3s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s/5s] OK * checking Rd files ... [0s/0s] NOTE checkRd: (-1) EPM_efetch_basic_q.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_efetch_basic_q.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_efetch_basic_q.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_efetch_basic_q.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_efetch_basic_q.Rd:32-33: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_efetch_basic_q.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_esearch_basic_q.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_esearch_basic_q.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_esearch_parse.Rd:25-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_esearch_parse.Rd:27-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_esearch_parse.Rd:29-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_esearch_parse.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_validate_fetch_params.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_validate_fetch_params.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_validate_fetch_params.Rd:26-28: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_validate_fetch_params.Rd:29-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_validate_fetch_params.Rd:32-34: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_validate_fetch_params.Rd:35-38: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_validate_fetch_params.Rd:39: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_validate_fetch_params.Rd:40-42: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_validate_fetch_params.Rd:43-44: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_validate_parse_params.Rd:23-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_validate_parse_params.Rd:31-32: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_validate_parse_params.Rd:33-37: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_validate_parse_params.Rd:38-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_validate_parse_params.Rd:40-41: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_validate_parse_params.Rd:42-43: Lost braces in \itemize; meant \describe ? checkRd: (-1) EPM_validate_parse_params.Rd:44-45: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [13s/65s] NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed easyPubMed-package 6.258 1.083 11.835 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [8s/9s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 3 NOTEs