R Under development (unstable) (2024-02-25 r85988 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # test.earth.R > # Check for porting problems by building a few simple models. > # For much more comprehensive tests see earth\inst\slowtests. > library(earth) Loading required package: Formula Loading required package: plotmo Loading required package: plotrix > options(digits=3) # prevent floating point implementation issues across machines > data(trees) > earth.mod <- earth(Volume~., data=trees) > print(summary(earth.mod)) Call: earth(formula=Volume~., data=trees) coefficients (Intercept) 29.060 h(14.2-Girth) -3.420 h(Girth-14.2) 6.230 h(Height-75) 0.581 Selected 4 of 5 terms, and 2 of 2 predictors Termination condition: RSq changed by less than 0.001 at 5 terms Importance: Girth, Height Number of terms at each degree of interaction: 1 3 (additive model) GCV 11.3 RSS 209 GRSq 0.96 RSq 0.974 > allowed.func <- function(degree, pred, parents, namesx) + { + namesx[pred] != "Height" # disallow "Height" + } > set.seed(2019) > earth.mod2 <- earth(Volume~., data=trees, allowed=allowed.func, trace=1) x[31,2] with colnames Girth Height y[31,1] with colname Volume, and values 10.3, 10.3, 10.2, 16.4, 18.8,... Forward pass term 1, 2, 4 RSq changed by less than 0.001 at 3 terms (DeltaRSq 9.7e-05) After forward pass GRSq 0.940 RSq 0.962 Prune backward penalty 2 nprune null: selected 3 of 3 terms, and 1 of 2 preds After pruning pass GRSq 0.949 RSq 0.961 > print(summary(earth.mod2)) Call: earth(formula=Volume~., data=trees, trace=1, allowed=allowed.func) coefficients (Intercept) 30.66 h(14.2-Girth) -3.57 h(Girth-14.2) 6.76 Selected 3 of 3 terms, and 1 of 2 predictors Termination condition: RSq changed by less than 0.001 at 3 terms Importance: Girth, Height-unused Number of terms at each degree of interaction: 1 2 (additive model) GCV 14.3 RSS 313 GRSq 0.949 RSq 0.961 > # multiple response model using class "Formula" and a factor predictor > data(iris) > earth.mod3 <- earth(Sepal.Length + Sepal.Width ~ Species, data=iris) > print(summary(earth.mod3)) Call: earth(formula=Sepal.Length+Sepal.Width~Species, data=iris) Sepal.Length Sepal.Width (Intercept) 5.01 3.428 Speciesversicolor 0.93 -0.658 Speciesvirginica 1.58 -0.454 Selected 3 of 3 terms, and 2 of 2 predictors Termination condition: RSq changed by less than 0.001 at 3 terms Importance: Speciesvirginica, Speciesversicolor Number of terms at each degree of interaction: 1 2 (additive model) GCV RSS GRSq RSq Sepal.Length 0.278 39.0 0.597 0.619 Sepal.Width 0.121 17.0 0.367 0.401 All 0.399 55.9 0.547 0.571 > plot(earth.mod3, nresponse="Sepal.Length", which=c(1,3), do.par=2, legend.pos="topleft") > plotmo(earth.mod3, nresponse=1, pt.col=2, do.par=0) > > proc.time() user system elapsed 0.78 0.06 0.78