downloading reverse dependencies ... downloading babelwhale_1.2.0.tar.gz ... ok downloading dyndimred_1.0.4.tar.gz ... ok downloading dyngen_1.0.5.tar.gz ... ok downloading dynparam_1.0.2.tar.gz ... ok downloading dynwrap_1.2.4.tar.gz ... ok downloading GillespieSSA2_0.3.0.tar.gz ... ok downloading lmds_0.1.0.tar.gz ... ok downloading SCORPIUS_1.0.9.tar.gz ... ok installing dependencies ‘anndata’, ‘babelwhale’, ‘carrier’, ‘diffusionMap’, ‘dyndimred’, ‘dynparam’, ‘dynutils’, ‘dynwrap’, ‘GillespieSSA’, ‘GillespieSSA2’, ‘lle’, ‘lmds’ Warning: package ‘lle’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages begin installing package ‘dynutils’ begin installing package ‘diffusionMap’ begin installing package ‘anndata’ begin installing package ‘carrier’ begin installing package ‘GillespieSSA’ * installing *source* package ‘carrier’ ... ** this is package ‘carrier’ version ‘0.2.0’ ** package ‘carrier’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (carrier) * installing *source* package ‘GillespieSSA’ ... ** this is package ‘GillespieSSA’ version ‘0.6.2’ ** package ‘GillespieSSA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GillespieSSA) * installing *source* package ‘diffusionMap’ ... ** this is package ‘diffusionMap’ version ‘1.2.0’ ** package ‘diffusionMap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (diffusionMap) * installing *source* package ‘anndata’ ... ** this is package ‘anndata’ version ‘0.8.0’ ** package ‘anndata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (anndata) * installing *source* package ‘dynutils’ ... ** this is package ‘dynutils’ version ‘1.0.12’ ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpug7H7c/R.INSTALL3b0d2d54370414/dynutils/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c project_to_segments.cpp -o project_to_segments.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spearman_rank_sparse.cpp -o spearman_rank_sparse.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o dynutils.so RcppExports.o project_to_segments.o spearman_rank_sparse.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpug7H7c/R.INSTALL3b0d2d54370414/dynutils/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dynutils/00new/dynutils/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dynutils) begin installing package ‘lmds’ begin installing package ‘GillespieSSA2’ begin installing package ‘babelwhale’ begin installing package ‘dynparam’ * installing *source* package ‘lmds’ ... ** this is package ‘lmds’ version ‘0.1.0’ ** package ‘lmds’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lmds) begin installing package ‘dyndimred’ * installing *source* package ‘babelwhale’ ... ** this is package ‘babelwhale’ version ‘1.2.0’ ** package ‘babelwhale’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (babelwhale) * installing *source* package ‘dynparam’ ... ** this is package ‘dynparam’ version ‘1.0.2’ ** package ‘dynparam’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dynparam) begin installing package ‘dynwrap’ * installing *source* package ‘dyndimred’ ... ** this is package ‘dyndimred’ version ‘1.0.4’ ** package ‘dyndimred’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dyndimred) * installing *source* package ‘dynwrap’ ... ** this is package ‘dynwrap’ version ‘1.2.4’ ** package ‘dynwrap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dynwrap) * installing *source* package ‘GillespieSSA2’ ... ** this is package ‘GillespieSSA2’ version ‘0.3.0’ ** package ‘GillespieSSA2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-1) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBxEVzT/R.INSTALL3b0ed26da3a074/GillespieSSA2/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ode_em.cpp -o ode_em.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ssa_btl.cpp -o ssa_btl.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ssa_etl.cpp -o ssa_etl.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ssa_exact.cpp -o ssa_exact.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ssa_method.cpp -o ssa_method.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ssa_simulation.cpp -o ssa_simulation.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test_helper_funs.cpp -o test_helper_funs.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o GillespieSSA2.so RcppExports.o ode_em.o ssa_btl.o ssa_etl.o ssa_exact.o ssa_method.o ssa_simulation.o test_helper_funs.o utils.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBxEVzT/R.INSTALL3b0ed26da3a074/GillespieSSA2/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-GillespieSSA2/00new/GillespieSSA2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GillespieSSA2) checking dynutils_1.0.12.tar.gz ... checking babelwhale_1.2.0.tar.gz ... checking dyndimred_1.0.4.tar.gz ... checking dyngen_1.0.5.tar.gz ... checking dynparam_1.0.2.tar.gz ... checking dynwrap_1.2.4.tar.gz ... checking GillespieSSA2_0.3.0.tar.gz ... checking lmds_0.1.0.tar.gz ... checking SCORPIUS_1.0.9.tar.gz ... Depends: Package: dynutils Depends: R (>= 3.0.0) Imports: assertthat, crayon, desc, dplyr, magrittr, Matrix, methods, proxyC (>= 0.3.3), purrr, Rcpp, remotes, stringr, tibble LinkingTo: Rcpp Timings: user system elapsed dynutils 70.612 7.26 80.499 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 2 6 Check results summary: dynutils ... OK rdepends_babelwhale ... OK rdepends_dyndimred ... OK rdepends_dyngen ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_dynparam ... OK rdepends_dynwrap ... OK rdepends_GillespieSSA2 ... OK rdepends_lmds ... OK rdepends_SCORPIUS ... NOTE * checking Rd files ... [0s/0s] NOTE Check results changes: Package: babelwhale Check: DESCRIPTION meta-information Old result: NOTE New result: OK Package: dyndimred Check: DESCRIPTION meta-information Old result: NOTE New result: OK Package: dyngen Check: CRAN incoming feasibility Old result: NOTE Package: dynparam Check: CRAN incoming feasibility Old result: NOTE Package: dynparam Check: DESCRIPTION meta-information Old result: NOTE New result: OK Package: dynwrap Check: DESCRIPTION meta-information Old result: NOTE New result: OK Package: GillespieSSA2 Check: CRAN incoming feasibility Old result: NOTE Package: lmds Check: DESCRIPTION meta-information Old result: NOTE New result: OK Package: SCORPIUS Check: DESCRIPTION meta-information Old result: NOTE New result: OK