installing dependencies ‘anndataR’, ‘dynutils’, ‘dynwrap’, ‘GillespieSSA2’, ‘lmds’ also installing the dependencies ‘RcppXPtrUtils’, ‘babelwhale’, ‘dynparam’ begin installing package ‘RcppXPtrUtils’ begin installing package ‘dynutils’ begin installing package ‘anndataR’ * installing *source* package ‘RcppXPtrUtils’ ... ** this is package ‘RcppXPtrUtils’ version ‘0.1.3’ ** package ‘RcppXPtrUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppXPtrUtils) * installing *source* package ‘anndataR’ ... ** this is package ‘anndataR’ version ‘1.1.2’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (anndataR) * installing *source* package ‘dynutils’ ... ** this is package ‘dynutils’ version ‘1.0.12’ ** package ‘dynutils’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpg2W1jX/R.INSTALL1049ec37fb3513/dynutils/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c project_to_segments.cpp -o project_to_segments.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spearman_rank_sparse.cpp -o spearman_rank_sparse.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o dynutils.so RcppExports.o project_to_segments.o spearman_rank_sparse.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpg2W1jX/R.INSTALL1049ec37fb3513/dynutils/src' installing to /home/hornik/tmp/CRAN_special_donttest/Library/00LOCK-dynutils/00new/dynutils/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dynutils) begin installing package ‘babelwhale’ begin installing package ‘dynparam’ begin installing package ‘GillespieSSA2’ begin installing package ‘lmds’ * installing *source* package ‘lmds’ ... ** this is package ‘lmds’ version ‘0.1.0’ ** package ‘lmds’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lmds) * installing *source* package ‘babelwhale’ ... ** this is package ‘babelwhale’ version ‘1.2.0’ ** package ‘babelwhale’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (babelwhale) * installing *source* package ‘dynparam’ ... ** this is package ‘dynparam’ version ‘1.0.2’ ** package ‘dynparam’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dynparam) begin installing package ‘dynwrap’ * installing *source* package ‘dynwrap’ ... ** this is package ‘dynwrap’ version ‘1.3.0’ ** package ‘dynwrap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dynwrap) * installing *source* package ‘GillespieSSA2’ ... ** this is package ‘GillespieSSA2’ version ‘0.3.0’ ** package ‘GillespieSSA2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp45Z1DI/R.INSTALL104ab74caa09b2/GillespieSSA2/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ode_em.cpp -o ode_em.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ssa_btl.cpp -o ssa_btl.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ssa_etl.cpp -o ssa_etl.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ssa_exact.cpp -o ssa_exact.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ssa_method.cpp -o ssa_method.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ssa_simulation.cpp -o ssa_simulation.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test_helper_funs.cpp -o test_helper_funs.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o GillespieSSA2.so RcppExports.o ode_em.o ssa_btl.o ssa_etl.o ssa_exact.o ssa_method.o ssa_simulation.o test_helper_funs.o utils.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp45Z1DI/R.INSTALL104ab74caa09b2/GillespieSSA2/src' installing to /home/hornik/tmp/CRAN_special_donttest/Library/00LOCK-GillespieSSA2/00new/GillespieSSA2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GillespieSSA2) checking dyngen_1.1.1.tar.gz ... Depends: Package: dyngen Depends: R (>= 4.1.0) Imports: assertthat, dplyr (>= 1.1.0), dynutils (>= 1.0.10), ggplot2, ggraph (>= 2.0), GillespieSSA2 (>= 0.2.6), grDevices, grid, igraph (>= 1.3.0), lmds, Matrix, methods, patchwork, pbapply, purrr, rlang (>= 0.4.1), stats, tibble, tidygraph, tidyr, tidyselect, utils, viridis Timings: user system elapsed dyngen 313.502 13.219 335.374 Results: Check status summary: OK Source packages 1 Check results summary: dyngen ... OK