data.table::setDTthreads(1) # For CRAN test_that("formula model topology is correct", { f1 <- obs(c(y1, y2) ~ 1 | x, family = "mvgaussian") + obs(x ~ 1 + z, family = "gaussian") f2 <- obs(z ~ w1, family = "gaussian") + obs(c(w1, w2, w3) ~ 1 | y | y, family = "mvgaussian") + obs(y ~ 1, family = "gaussian") expect_identical(attr(f1, "model_topology"), 2:1) expect_identical(attr(f2, "model_topology"), 3:1) expect_identical(attr(f2 + f1, "model_topology"), c(3:1, 5:4)) expect_identical(attr(f1 + f2, "model_topology"), 5:1) }) test_that("formula parts are correct", { f1 <- y ~ x + z * h f2 <- ~ x + z * h expect_identical(formula_rhs(f1), formula_rhs(f2)) expect_identical(formula_lhs(f1), quote(y)) expect_identical(formula_lhs(f2), NULL) }) test_that("formula incrementation logic is correct", { obs_list <- list( obs(y ~ 1, family = "gaussian")[[1L]], obs(y ~ -1 + varying(~1), family = "gaussian")[[1L]], obs(y ~ x, family = "gaussian")[[1L]], obs(y ~ -1 + varying(~x), family = "gaussian")[[1L]], obs(y ~ -1 + x + varying(~z), family = "gaussian")[[1L]], obs(y ~ x + varying(~ -1 + z), family = "gaussian")[[1L]], obs(y ~ -1 + varying(~ x + z), family = "gaussian")[[1L]], obs(y ~ -1 + random(~1), family = "gaussian")[[1L]], obs(y ~ -1 + random(~x), family = "gaussian")[[1L]], obs(y ~ -1 + x + random(~z), family = "gaussian")[[1L]], obs(y ~ x + random(~ -1 + z), family = "gaussian")[[1L]], obs(y ~ -1 + random(~ x + z), family = "gaussian")[[1L]], obs(y ~ 1 + varying(~ -1 + x) + random(~ -1 + z), family = "gaussian")[[1L]] ) out_list <- list( list( y ~ 1 + w, y ~ 1 + varying(~ -1 + w), y ~ 1 + random(~ -1 + w) ), list( y ~ -1 + w + varying(~1), y ~ -1 + varying(~ 1 + w), y ~ -1 + varying(~1) + random(~ -1 + w) ), list( y ~ 1 + x + w, y ~ 1 + x + varying(~ -1 + w), y ~ 1 + x + random(~ -1 + w) ), list( y ~ -1 + w + varying(~ 1 + x), y ~ -1 + varying(~ 1 + x + w), y ~ -1 + varying(~ 1 + x) + random(~ -1 + w) ), list( y ~ -1 + x + w + varying(~ 1 + z), y ~ -1 + x + varying(~ 1 + z + w), y ~ -1 + x + varying(~ 1 + z) + random(~ -1 + w) ), list( y ~ 1 + x + w + varying(~ -1 + z), y ~ 1 + x + varying(~ -1 + z + w), y ~ 1 + x + varying(~ -1 + z) + random(~ -1 + w) ), list( y ~ -1 + w + varying(~ 1 + x + z), y ~ -1 + varying(~ 1 + x + z + w), y ~ -1 + varying(~ 1 + x + z) + random(~ -1 + w) ), list( y ~ -1 + w + random(~1), y ~ -1 + varying(~ -1 + w) + random(~1), y ~ -1 + random(~ 1 + w) ), list( y ~ -1 + w + random(~ 1 + x), y ~ -1 + varying(~ -1 + w) + random(~ 1 + x), y ~ -1 + random(~ 1 + x + w) ), list( y ~ -1 + x + w + random(~ 1 + z), y ~ -1 + x + varying(~ -1 + w) + random(~ 1 + z), y ~ -1 + x + random(~ 1 + z + w) ), list( y ~ 1 + x + w + random(~ -1 + z), y ~ 1 + x + varying(~ -1 + w) + random(~ -1 + z), y ~ 1 + x + random(~ -1 + z + w) ), list( y ~ -1 + w + random(~ 1 + x + z), y ~ -1 + varying(~ -1 + w) + random(~ 1 + x + z), y ~ -1 + random(~ 1 + x + z + w) ), list( y ~ 1 + w + varying(~ -1 + x) + random(~ -1 + z), y ~ 1 + varying(~ -1 + x + w) + random(~ -1 + z), y ~ 1 + varying(~ -1 + x) + random(~ -1 + z + w) ) ) for (i in seq_along(obs_list)) { o <- obs_list[[i]] form_list <- list( increment_formula( formula = o$formula, specials = list(), x = "w", type = "fixed", varying_idx = o$varying, fixed_idx = o$fixed, random_idx = o$random, varying_icpt = o$has_varying_intercept, fixed_icpt = o$has_fixed_intercept, random_icpt = o$has_random_intercept ), increment_formula( formula = o$formula, specials = list(), x = "w", type = "varying", varying_idx = o$varying, fixed_idx = o$fixed, random_idx = o$random, varying_icpt = o$has_varying_intercept, fixed_icpt = o$has_fixed_intercept, random_icpt = o$has_random_intercept ), increment_formula( formula = o$formula, specials = list(), x = "w", type = "random", varying_idx = o$varying, fixed_idx = o$fixed, random_idx = o$random, varying_icpt = o$has_varying_intercept, fixed_icpt = o$has_fixed_intercept, random_icpt = o$has_random_intercept ) ) expect_equal(form_list[[1L]], out_list[[!!i]][[1L]], ignore_attr = TRUE) expect_equal(form_list[[2L]], out_list[[!!i]][[2L]], ignore_attr = TRUE) expect_equal(form_list[[3L]], out_list[[!!i]][[3L]], ignore_attr = TRUE) } }) test_that("non-lag term extraction from language objects is correct", { expect_identical(find_nonlags(quote(x + z)), c("x", "z")) expect_identical(find_nonlags(quote(x + fun(y))), c("x", "y")) expect_identical(find_nonlags(quote(x + lag(y))), c("x")) expect_identical(find_nonlags(quote(x + fun(y, lag(z)))), c("x", "y")) }) test_that("internally unsupported families fail", { expect_error( dynamitefamily("new family"), '"new family" is not a supported family\\.' ) }) test_that("is.dynamitefamily works", { a <- dynamitefamily("gaussian") b <- stats::gaussian() expect_identical(is.dynamitefamily(a), TRUE) expect_identical(is.dynamitefamily(b), FALSE) }) test_that("paste_rows works correctly", { out <- "a\nb\nc\nd\ne\nf" expect_identical( paste_rows(c("a", "b", "c"), c("d", "e"), "f", .parse = TRUE), out ) expect_identical( paste_rows(c("a", "b", "c"), c("d", "e"), "f", .parse = FALSE), out ) }) test_that("message_ outputs", { expect_message(message_("This is a message"), "This is a message") }) test_that("R_version works", { expect_identical(R_version(), base::getRversion()) })