* using log directory ‘/srv/hornik/tmp/CRAN/dynamite.Rcheck’ * using R Under development (unstable) (2023-08-20 r84995) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 16.0.6 (10) GNU Fortran (Debian 13.2.0-1) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘dynamite/DESCRIPTION’ ... OK * this is package ‘dynamite’ version ‘1.4.5’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [5s/16s] NOTE Maintainer: ‘Santtu Tikka ’ Suggests or Enhances not in mainstream repositories: cmdstanr Availability using Additional_repositories specification: cmdstanr yes https://mc-stan.org/r-packages/ Found the following (possibly) invalid URLs: URL: https://arxiv.org/abs/2302.01607 From: man/dynamite.Rd inst/CITATION inst/doc/dynamite.html README.md Status: Error Message: Empty reply from server URL: https://r-datatable.com From: inst/doc/dynamite.html Status: Error Message: GnuTLS recv error (-110): The TLS connection was non-properly terminated. * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: ‘cmdstanr’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘dynamite’ can be installed ... [19s/19s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [15s/15s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘cmdstanr’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [2s/2s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [35s/9s] NOTE Examples with CPU time > 2.5 times elapsed time user system elapsed ratio plot_deltas 3.173 0.073 0.278 11.676 mcmc_diagnostics 3.573 0.108 0.382 9.636 dynamite 4.521 0.112 0.496 9.341 as_draws-dynamitefit 3.829 0.109 0.636 6.192 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [73s/19s] NOTE Running ‘testthat.R’ [73s/19s] Running R code in ‘testthat.R’ had CPU time 3.9 times elapsed time * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [70s/14s] NOTE Re-building vignettes had CPU time 5 times elapsed time * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 6 NOTEs