downloading reverse dependencies ‘pedsuite’ trying URL 'file:///data/Repositories/CRAN/src/contrib/pedsuite_1.4.0.tar.gz' Content type 'unknown' length 1013866 bytes (990 KB) ================================================== installing dependencies ‘dvir’, ‘forrel’, ‘ibdfindr’, ‘ibdsim2’, ‘norSTR’, ‘paramlink2’, ‘pedbuildr’, ‘pedFamilias’, ‘segregatr’, ‘verbalisr’ begin installing package ‘pedFamilias’ begin installing package ‘verbalisr’ begin installing package ‘ibdsim2’ begin installing package ‘norSTR’ begin installing package ‘paramlink2’ begin installing package ‘segregatr’ * installing *source* package ‘norSTR’ ... ** this is package ‘norSTR’ version ‘0.2.1’ ** package ‘norSTR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (norSTR) * installing *source* package ‘verbalisr’ ... ** this is package ‘verbalisr’ version ‘0.7.2’ ** package ‘verbalisr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (verbalisr) begin installing package ‘forrel’ * installing *source* package ‘segregatr’ ... ** this is package ‘segregatr’ version ‘0.5.0’ ** package ‘segregatr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (segregatr) * installing *source* package ‘paramlink2’ ... ** this is package ‘paramlink2’ version ‘1.0.6’ ** package ‘paramlink2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paramlink2) * installing *source* package ‘pedFamilias’ ... ** this is package ‘pedFamilias’ version ‘0.2.4’ ** package ‘pedFamilias’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pedFamilias) * installing *source* package ‘forrel’ ... ** this is package ‘forrel’ version ‘1.8.1’ ** package ‘forrel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (forrel) begin installing package ‘dvir’ begin installing package ‘pedbuildr’ * installing *source* package ‘ibdsim2’ ... ** this is package ‘ibdsim2’ version ‘2.3.2’ ** package ‘ibdsim2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIv82As/R.INSTALL337107e969a0c/ibdsim2/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ibdsim2.cpp -o ibdsim2.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o ibdsim2.so RcppExports.o ibdsim2.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIv82As/R.INSTALL337107e969a0c/ibdsim2/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ibdsim2/00new/ibdsim2/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ibdsim2) begin installing package ‘ibdfindr’ * installing *source* package ‘pedbuildr’ ... ** this is package ‘pedbuildr’ version ‘0.3.0’ ** package ‘pedbuildr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pedbuildr) * installing *source* package ‘dvir’ ... ** this is package ‘dvir’ version ‘3.4.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dvir) * installing *source* package ‘ibdfindr’ ... ** this is package ‘ibdfindr’ version ‘0.3.1’ ** package ‘ibdfindr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ibdfindr) checking dvir_3.4.0.tar.gz ... checking pedsuite_1.4.0.tar.gz ... Depends: Package: dvir Depends: pedtools, R (>= 4.2.0) Imports: forrel, pbapply, pedFamilias, pedprobr, ribd, verbalisr Timings: user system elapsed dvir 53.892 5.313 61.221 Results: Check status summary: OK Source packages 1 Reverse depends 1 Check results summary: dvir ... OK rdepends_pedsuite ... OK