library(igraph) V1 <- c("A", "A","B","C","D","E") V2 <- c("A", "B","C","D","E","A") different.nodes <- unique(c(V1, V2)) df <- data.frame(V1, V2) test_that("Graph with default values", { dup.graph <- dup.nodes.from.data.frame(df) expect_equal( length(V(dup.graph)), length(different.nodes)+1 ) }) colnames(df) <- c("node1", "node2") test_that("Graph with custom values", { dup.graph <- dup.nodes.from.data.frame(df, first.node="node1", second.node="node2") expect_equal( length(V(dup.graph)), length(different.nodes)+1 ) expect_equal( length(E(dup.graph)[ "A" %--% "A'"] ),1) expect_equal( length(incident(dup.graph,"A")), length(incident(dup.graph,"A'")) ) }) test_that("Does not change if no self-loops", { letters.3 <- c("A","B","C") df <- data.frame(V1=letters.3, V2=c("B","C","A")) unchanged.graph <- dup.nodes.from.data.frame(df) expect_equal( length(V(unchanged.graph)), length(letters.3) ) }) V1 <- c("A", "A","B","B", "C","D","E") V2 <- c("A", "B","B","C","D","E","A") df <- data.frame(V1, V2) test_that("Works with two connected nodes with self-loops", { dup.graph <- dup.nodes.from.data.frame(df) expect_equal( length(V(dup.graph)), length(unique(c(V1, V2)))+2 ) expect_equal( length(E(dup.graph)[ "A" %--% "B'"] ),1) expect_equal( length(incident(dup.graph,"A")), length(incident(dup.graph,"A'"))) expect_equal( length(incident(dup.graph,"B")), length(incident(dup.graph,"B'"))) }) V1 <- c("A", "A","B","C","D","E","D") V2 <- c("A", "B","C","D","E","A","D") df <- data.frame(V1, V2) test_that("Works with two disconnected nodes with self-loops", { dup.graph <- dup.nodes.from.data.frame(df) expect_equal( length(V(dup.graph)), length(unique(c(V1, V2)))+2 ) expect_equal( length(E(dup.graph)[ "D" %--% "D'"] ),1) expect_equal( length(incident(dup.graph,"A")), length(incident(dup.graph,"A'"))) expect_equal( length(incident(dup.graph,"D")), length(incident(dup.graph,"D'"))) })