downloading reverse dependencies ‘AgroR’, ‘CleaningValidation’, ‘deepSTRAPP’, ‘FSA’, ‘MultBiplotR’, ‘multiclassPairs’, ‘Orangutan’, ‘visxhclust’, ‘colleyRstats’ trying URL 'file:///data/Repositories/CRAN/src/contrib/AgroR_1.3.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CleaningValidation_1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/deepSTRAPP_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/FSA_0.10.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/MultBiplotR_25.11.15.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/multiclassPairs_0.4.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/Orangutan_2.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/visxhclust_1.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/colleyRstats_0.0.2.tar.gz' installing dependencies ‘ARTool’, ‘BAMMtools’, ‘BioGeoBEARS’, ‘cladoRcpp’, ‘dae’, ‘dunn.test’, ‘fishmethods’, ‘FSAdata’, ‘ggstatsplot’, ‘leukemiasEset’, ‘moocore’, ‘nparLD’, ‘report’, ‘reporttools’, ‘sjPlot’, ‘switchBox’ Warning: package ‘BioGeoBEARS’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘ggside’, ‘statsExpressions’, ‘sjstats’ begin installing package ‘ggside’ begin installing package ‘statsExpressions’ begin installing package ‘sjstats’ begin installing package ‘BAMMtools’ begin installing package ‘cladoRcpp’ begin installing package ‘fishmethods’ begin installing package ‘FSAdata’ begin installing package ‘dae’ begin installing package ‘switchBox’ begin installing package ‘leukemiasEset’ begin installing package ‘ARTool’ begin installing package ‘report’ begin installing package ‘nparLD’ begin installing package ‘moocore’ begin installing package ‘reporttools’ begin installing package ‘dunn.test’ * installing *source* package ‘leukemiasEset’ ... ** this is package ‘leukemiasEset’ version ‘1.46.0’ ** using staged installation ** data ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leukemiasEset) * installing *source* package ‘dunn.test’ ... ** this is package ‘dunn.test’ version ‘1.3.7’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dunn.test) * installing *source* package ‘reporttools’ ... ** this is package ‘reporttools’ version ‘1.1.4’ ** package ‘reporttools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reporttools) * installing *source* package ‘FSAdata’ ... ** this is package ‘FSAdata’ version ‘0.4.1’ ** package ‘FSAdata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FSAdata) * installing *source* package ‘sjstats’ ... ** this is package ‘sjstats’ version ‘0.19.1’ ** package ‘sjstats’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sjstats) begin installing package ‘sjPlot’ * installing *source* package ‘statsExpressions’ ... ** this is package ‘statsExpressions’ version ‘1.7.3’ ** package ‘statsExpressions’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (statsExpressions) * installing *source* package ‘switchBox’ ... ** this is package ‘switchBox’ version ‘1.46.0’ ** package ‘switchBox’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZ2XKX5/R.INSTALL19b7a520233262/switchBox/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CalculateSignedScoreCore.cc -o CalculateSignedScoreCore.o CalculateSignedScoreCore.cc: In function ‘void CalculateSignedScoreCore(int*, int*, double*, int*, double*, int*, double*, double*, double*, double*, double*, double*, double*)’: CalculateSignedScoreCore.cc:36:26: warning: variable ‘pairsNo’ set but not used [-Wunused-but-set-variable] 36 | int i,j,l,countplace,pairsNo; | ^~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CalculateSignedScoreCoreTieHandler.cc -o CalculateSignedScoreCoreTieHandler.o CalculateSignedScoreCoreTieHandler.cc: In function ‘void CalculateSignedScoreCoreTieHandler(int*, int*, double*, int*, double*, int*, double*, double*, double*, double*)’: CalculateSignedScoreCoreTieHandler.cc:49:12: warning: unused variable ‘score1’ [-Wunused-variable] 49 | double score1, score2, type; | ^~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CalculateSignedScoreRestrictedPairsCore.cc -o CalculateSignedScoreRestrictedPairsCore.o CalculateSignedScoreRestrictedPairsCore.cc: In function ‘void CalculateSignedScoreRestrictedPairsCore(int*, int*, double*, int*, double*, int*, int*, int*, int*, double*, double*, double*)’: CalculateSignedScoreRestrictedPairsCore.cc:22:25: warning: variable ‘countplace’ set but not used [-Wunused-but-set-variable] 22 | int i,l,countplace,pairsNo; | ^~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CalculateSignedScoreRestrictedPairsCoreTieHandler.cc -o CalculateSignedScoreRestrictedPairsCoreTieHandler.o CalculateSignedScoreRestrictedPairsCoreTieHandler.cc: In function ‘void CalculateSignedScoreRestrictedPairsCoreTieHandler(int*, int*, double*, int*, double*, int*, int*, int*, int*, double*, double*, double*, double*)’: CalculateSignedScoreRestrictedPairsCoreTieHandler.cc:25:25: warning: unused variable ‘countplace’ [-Wunused-variable] 25 | int i,l,countplace,pairsNo; | ^~~~~~~~~~ CalculateSignedScoreRestrictedPairsCoreTieHandler.cc:35:24: warning: unused variable ‘score1’ [-Wunused-variable] 35 | double score1, score2, type; | ^~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rinit.c -o rinit.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vect2compC.cc -o vect2compC.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o switchBox.so CalculateSignedScoreCore.o CalculateSignedScoreCoreTieHandler.o CalculateSignedScoreRestrictedPairsCore.o CalculateSignedScoreRestrictedPairsCoreTieHandler.o rinit.o vect2compC.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZ2XKX5/R.INSTALL19b7a520233262/switchBox/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-switchBox/00new/switchBox/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (switchBox) * installing *source* package ‘nparLD’ ... ** this is package ‘nparLD’ version ‘2.2’ ** package ‘nparLD’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nparLD) * installing *source* package ‘BAMMtools’ ... ** this is package ‘BAMMtools’ version ‘2.1.12’ ** package ‘BAMMtools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpokAHo2/R.INSTALL19b79c7d67813e/BAMMtools/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c BAMMtools_init.c -o BAMMtools_init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cohort_matrix.c -o cohort_matrix.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dtrates.c -o dtrates.o dtrates.c: In function ‘dtrates’: dtrates.c:188:17: warning: ‘erates’ may be used uninitialized [-Wmaybe-uninitialized] 188 | SET_VECTOR_ELT(retlist, 1, erates); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dtrates.c:71:21: note: ‘erates’ was declared here 71 | SEXP rates, erates; | ^~~~~~ dtrates.c:145:44: warning: ‘nnode’ may be used uninitialized [-Wmaybe-uninitialized] 145 | if (node == nnode) { | ^ dtrates.c:83:25: note: ‘nnode’ was declared here 83 | int nrow, node, nnode, event, nxtevent, isGoodStart, isGoodEnd, place_holder; | ^~~~~ dtrates.c:157:103: warning: ‘nxtevent’ may be used uninitialized [-Wmaybe-uninitialized] 157 | lam1 = REAL(getListElement(eventData, "lam1"))[nxtevent-1]; | ^ dtrates.c:83:39: note: ‘nxtevent’ was declared here 83 | int nrow, node, nnode, event, nxtevent, isGoodStart, isGoodEnd, place_holder; | ^~~~~~~~ dtrates.c:140:63: warning: ‘mu1’ may be used uninitialized [-Wmaybe-uninitialized] 140 | ret = getMeanRateExponential(relStart,relEnd,mu1,mu2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dtrates.c:84:47: note: ‘mu1’ was declared here 84 | double begin, end, Start, lam1, lam2, mu1, mu2, relStart, relEnd, rightshift, leftshift, erightshift, eleftshift, ret; | ^~~ dtrates.c:140:63: warning: ‘mu2’ may be used uninitialized [-Wmaybe-uninitialized] 140 | ret = getMeanRateExponential(relStart,relEnd,mu1,mu2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dtrates.c:84:52: note: ‘mu2’ was declared here 84 | double begin, end, Start, lam1, lam2, mu1, mu2, relStart, relEnd, rightshift, leftshift, erightshift, eleftshift, ret; | ^~~ dtrates.c:168:82: warning: ‘eleftshift’ may be used uninitialized [-Wmaybe-uninitialized] 168 | ret = (eleftshift+erightshift)/(getDblMatrixELT(segmat, l, 2) - getDblMatrixELT(segmat, l, 1)); | ~~~~~~~~~~~^~~~~~~~~~~~~ dtrates.c:84:111: note: ‘eleftshift’ was declared here 84 | double begin, end, Start, lam1, lam2, mu1, mu2, relStart, relEnd, rightshift, leftshift, erightshift, eleftshift, ret; | ^~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c jenksBrks.c -o jenksBrks.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c treetraverse.c -o treetraverse.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o BAMMtools.so BAMMtools_init.o cohort_matrix.o dtrates.o jenksBrks.o treetraverse.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpokAHo2/R.INSTALL19b79c7d67813e/BAMMtools/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BAMMtools/00new/BAMMtools/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BAMMtools) * installing *source* package ‘ARTool’ ... ** this is package ‘ARTool’ version ‘0.11.2’ ** package ‘ARTool’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ARTool) * installing *source* package ‘report’ ... ** this is package ‘report’ version ‘0.6.3’ ** package ‘report’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (report) * installing *source* package ‘ggside’ ... ** this is package ‘ggside’ version ‘0.4.1’ ** package ‘ggside’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggside) begin installing package ‘ggstatsplot’ * installing *source* package ‘dae’ ... ** this is package ‘dae’ version ‘3.2.32’ ** package ‘dae’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dae) * installing *source* package ‘cladoRcpp’ ... ** this is package ‘cladoRcpp’ version ‘0.15.1’ ** package ‘cladoRcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWRiGm8/R.INSTALL19b7b069c6b86f/cladoRcpp/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c basics.cpp -o basics.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c calc_anclikes_sp.cpp -o calc_anclikes_sp.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:29, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27, from basics.h:4, from calc_anclikes_sp.cpp:20: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/r/check_r_headers.h:27:21: note: ‘#pragma message: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 27 | #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/tmp/R/include/R.h:73, from calc_anclikes_sp.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h: In function ‘void Rcpp::Rf_warning(const char*, Args&& ...) [with Args = {const char*}]’: /home/hornik/tmp/R/include/R_ext/Error.h:89:17: warning: infinite recursion detected [-Winfinite-recursion] 89 | #define warning Rf_warning | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h:188:17: note: in expansion of macro ‘warning’ 188 | inline void warning(const char* fmt, Args&&... args ) { | ^~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:131: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h:189:19: note: recursive call 189 | Rf_warning("%s", tfm::format(fmt, std::forward(args)... ).c_str()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o cladoRcpp.so basics.o calc_anclikes_sp.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWRiGm8/R.INSTALL19b7b069c6b86f/cladoRcpp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-cladoRcpp/00new/cladoRcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cladoRcpp) * installing *source* package ‘sjPlot’ ... ** this is package ‘sjPlot’ version ‘2.9.0’ ** package ‘sjPlot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sjPlot) * installing *source* package ‘ggstatsplot’ ... ** this is package ‘ggstatsplot’ version ‘0.13.5’ ** package ‘ggstatsplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggstatsplot) * installing *source* package ‘moocore’ ... ** this is package ‘moocore’ version ‘0.2.0’ ** package ‘moocore’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/hv3dplus.c -o libmoocore/hv3dplus.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/hv4d.c -o libmoocore/hv4d.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/hv_contrib.c -o libmoocore/hv_contrib.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/hv.c -o libmoocore/hv.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/hvapprox.c -o libmoocore/hvapprox.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/hvc3d.c -o libmoocore/hvc3d.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/pareto.c -o libmoocore/pareto.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/whv.c -o libmoocore/whv.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/whv_hype.c -o libmoocore/whv_hype.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/avl.c -o libmoocore/avl.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/eaf3d.c -o libmoocore/eaf3d.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/eaf.c -o libmoocore/eaf.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/io.c -o libmoocore/io.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/rng.c -o libmoocore/rng.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/mt19937/mt19937.c -o libmoocore/mt19937/mt19937.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rmoocore.c -o Rmoocore.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o moocore.so libmoocore/hv3dplus.o libmoocore/hv4d.o libmoocore/hv_contrib.o libmoocore/hv.o libmoocore/hvapprox.o libmoocore/hvc3d.o libmoocore/pareto.o libmoocore/whv.o libmoocore/whv_hype.o libmoocore/avl.o libmoocore/eaf3d.o libmoocore/eaf.o libmoocore/io.o libmoocore/rng.o libmoocore/mt19937/mt19937.o init.o Rmoocore.o -L/home/hornik/tmp/R/lib -lR make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/libmoocore' Building on 'Linux' ---> Removing /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/eaf <--- ---> Removing /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/nondominated <--- ---> Removing /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/hv <--- ---> Removing /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/hvapprox <--- ---> Removing /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/igd <--- ---> Removing /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/epsilon <--- ---> Removing /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/dominatedsets <--- ---> Removing /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/ndsort <--- ---> Removing object files: avl.o cmdline.o dominatedsets.o eaf3d.o eaf.o eafdiff.o eaf_main.o epsilon.o hv3dplus.o hv4d.o hv.o hvapprox.o hvc3d.o hv_contrib.o igd.o io.o libutil.o main-hv.o main-hvapprox.o mt19937/mt19937.o ndsort.o nondominated.o pareto.o rng.o timer.o whv.o whv_hype.o <--- make default make[3]: Entering directory '/home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/libmoocore' Building on 'Linux' gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o cmdline.o cmdline.c gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o io.o io.c gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o eaf.o eaf.c gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o eaf_main.o eaf_main.c gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o eaf3d.o eaf3d.c gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o avl.o avl.c --> Building /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/eaf version 0.18 <--- gcc-15 -o /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/eaf cmdline.o io.o eaf.o eaf_main.o eaf3d.o avl.o -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -lm gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o nondominated.o nondominated.c gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o timer.o timer.c --> Building /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/nondominated version 0.18 <--- gcc-15 -o /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/nondominated cmdline.o io.o nondominated.o timer.o -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -lm gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o main-hv.o main-hv.c gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o hv.o hv.c gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o hv3dplus.o hv3dplus.c gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o hv4d.o hv4d.c gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o hvc3d.o hvc3d.c gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o hv_contrib.o hv_contrib.c --> Building /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/hv version 0.18 <--- gcc-15 -o /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/hv cmdline.o io.o main-hv.o timer.o hv.o hv3dplus.o hv4d.o hvc3d.o hv_contrib.o -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -lm gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o main-hvapprox.o main-hvapprox.c gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o hvapprox.o hvapprox.c gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o rng.o rng.c gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o mt19937/mt19937.o mt19937/mt19937.c --> Building /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/hvapprox version 0.18 <--- gcc-15 -o /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/hvapprox cmdline.o io.o main-hvapprox.o timer.o hvapprox.o rng.o mt19937/mt19937.o -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -lm gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o igd.o igd.c --> Building /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/igd version 0.18 <--- gcc-15 -o /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/igd cmdline.o io.o igd.o -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -lm gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o epsilon.o epsilon.c --> Building /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/epsilon version 0.18 <--- gcc-15 -o /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/epsilon cmdline.o io.o epsilon.o -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -lm gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o dominatedsets.o dominatedsets.c --> Building /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/dominatedsets version 0.18 <--- gcc-15 -o /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/dominatedsets cmdline.o io.o dominatedsets.o -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -lm gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o ndsort.o ndsort.c gcc-15 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o pareto.o pareto.c --> Building /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/ndsort version 0.18 <--- gcc-15 -o /home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/ndsort cmdline.o io.o ndsort.o pareto.o hv.o hv3dplus.o hv4d.o hvc3d.o hv_contrib.o -DDEBUG=0 -DVERSION='"0.18"' -DMARCH='""' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -lm make[3]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/libmoocore' make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src/libmoocore' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2B9kxq/R.INSTALL19b7bd5379cc8d/moocore/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-moocore/00new/moocore ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (moocore) * installing *source* package ‘fishmethods’ ... ** this is package ‘fishmethods’ version ‘1.13-1’ ** package ‘fishmethods’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpURKAsJ/R.INSTALL19b7aa23cd7175/fishmethods/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c init_dummy_file.cpp -o init_dummy_file.o (cd TMB; /home/hornik/tmp/R/bin/Rscript \ --no-save --no-restore compile.R '') Note: Using Makevars in /home/hornik/.R/Makevars-gcc using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpURKAsJ/R.INSTALL19b7aa23cd7175/fishmethods/src/TMB' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include" -I"/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_fishmethods_TMBExports -DCPPAD_FRAMEWORK -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fishmethods_TMBExports.cpp -o fishmethods_TMBExports.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fishmethods_TMBExports.so fishmethods_TMBExports.o -L/home/hornik/tmp/R/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpURKAsJ/R.INSTALL19b7aa23cd7175/fishmethods/src/TMB' [1] TRUE g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fishmethods.so init_dummy_file.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpURKAsJ/R.INSTALL19b7aa23cd7175/fishmethods/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fishmethods/00new/fishmethods/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fishmethods) checking dunn.test_1.3.7.tar.gz ... checking AgroR_1.3.7.tar.gz ... checking deepSTRAPP_1.0.0.tar.gz ... checking CleaningValidation_1.0.tar.gz ... checking FSA_0.10.1.tar.gz ... checking MultBiplotR_25.11.15.tar.gz ... checking multiclassPairs_0.4.3.tar.gz ... checking Orangutan_2.0.0.tar.gz ... checking visxhclust_1.1.0.tar.gz ... checking colleyRstats_0.0.2.tar.gz ... Depends: Package: dunn.test Imports: rlang Timings: user system elapsed dunn.test 17.604 3.124 21.524 Results: Check status summary: ERROR OK Source packages 0 1 Reverse depends 2 7 Check results summary: dunn.test ... OK rdepends_AgroR ... OK rdepends_CleaningValidation ... OK rdepends_colleyRstats ... ERROR * checking tests ... [11s/11s] ERROR rdepends_deepSTRAPP ... OK rdepends_FSA ... ERROR * checking dependencies in R code ... WARNING * checking examples ... [2s/2s] ERROR * checking tests ... [33s/33s] ERROR rdepends_MultBiplotR ... OK rdepends_multiclassPairs ... OK rdepends_Orangutan ... OK rdepends_visxhclust ... OK Check results changes: Package: colleyRstats Check: tests New result: ERROR Package: FSA Check: dependencies in R code New result: WARNING Package: FSA Check: examples New result: ERROR Package: FSA Check: tests New result: ERROR Package: multiclassPairs Check: CRAN incoming feasibility Old result: NOTE