test_that("differ_input returns the list for a numeric input", { expect_equal(differ_input(3), 3) }) test_that("differ_input calls the df_structure for a dataframe", { df <- data.frame(A = 1, B = 2, stringsAsFactors = FALSE) the$uid <- generate_uid() result <- differ_input(df) expect_equal(result$rows[[1]]$cells[[1]]$value, "1") }) test_that("differ_input calls the df_structure for a tuple", { df <- data.frame(A = 1, B = 2, stringsAsFactors = FALSE) my_tuple <- sets::tuple(df, "my_tuple") the$uid <- generate_uid() result <- differ_input(my_tuple) expect_equal(result$rows[[1]]$cells[[1]]$value, "1") }) test_that("df_structure writes column titles", { df <- data.frame(A = 1, B = 2, stringsAsFactors = FALSE) the$uid <- generate_uid() result <- df_structure(df, label = "Table") expect_equal(result$columns[[1]]$col_titles, "A") }) test_that("df_structure writes missing values", { df <- data.frame(A = 1, B = NA, stringsAsFactors = FALSE) the$uid <- generate_uid() result <- df_structure(df, label = "Table") expect_equal(is.na(result$rows[[1]]$cells[[2]]$value), TRUE) }) test_that("to_jsonld gives error when a field is a function", { abc <- function(x) { return(x + 1) } dt <- load_datatype("https://doi.org/21.T11969/74bc7748b8cd520908bc") instance <- dt$inferential_test_output(has_format = abc) expect_error(to_jsonld(instance), "Input in has_format should not be a function", fixed = TRUE) }) test_that("to_jsonld writes an ePIC instance into JSONLD", { dt <- load_datatype("https://doi.org/21.T11969/aff130c76e68ead3862e") df <- data.frame(A = 1, stringsAsFactors = FALSE) instance <- dt$data_item(source_table = df) result <- to_jsonld(instance) expected <- c("{", " \"@id\": \"_:n1\",", " \"@type\": \"doi:aff130c76e68ead3862e\",", " \"doi:aff130c76e68ead3862e#source_table\": {", " \"@type\": \"doi:0424f6e7026fa4bc2c4a\",", " \"tab_label\": \"Table\",", " \"columns\": [", " {", " \"@type\": \"doi:65ba00e95e60fb8971e6\",", " \"col_number\": 1,", " \"col_titles\": \"A\",", " \"@id\": \"_:n2\"", " }", " ],", " \"rows\": [", " {", " \"@type\": \"doi:9bf7a8e8909bfd491b38\",", " \"row_number\": 1,", " \"row_titles\": \"1\",", " \"@id\": \"_:n3\",", " \"cells\": [", " {", " \"@type\": \"doi:4607bc7c42ac8db29bfc\",", " \"@id\": \"_:n4\",", " \"value\": \"1\",", " \"column\": \"_:n2\"", " }", " ]", " }", " ],", " \"@id\": \"_:n5\"", " },", " \"@context\": {", " \"doi\": \"https://doi.org/21.T11969/\",", " \"columns\": \"https://doi.org/21.T11969/0424f6e7026fa4bc2c4a#columns\",", " \"col_number\": \"https://doi.org/21.T11969/65ba00e95e60fb8971e6#number\",", " \"col_titles\": \"https://doi.org/21.T11969/65ba00e95e60fb8971e6#titles\",", " \"rows\": \"https://doi.org/21.T11969/0424f6e7026fa4bc2c4a#rows\",", " \"row_number\": \"https://doi.org/21.T11969/9bf7a8e8909bfd491b38#number\",", " \"row_titles\": \"https://doi.org/21.T11969/9bf7a8e8909bfd491b38#titles\",", " \"cells\": \"https://doi.org/21.T11969/9bf7a8e8909bfd491b38#cells\",", " \"column\": \"https://doi.org/21.T11969/4607bc7c42ac8db29bfc#column\",", " \"value\": \"https://doi.org/21.T11969/4607bc7c42ac8db29bfc#value\",", " \"tab_label\": \"https://doi.org/21.T11969/0424f6e7026fa4bc2c4a#label\"", " }", "} ") expect_equal(capture.output(print(result)), expected) }) test_that("to_jsonld writes an ePIC instance with a nested component", { dt <- load_datatype("https://doi.org/21.T11969/aff130c76e68ead3862e") url <- dt$url() instance <- dt$data_item(has_expression = url) result <- to_jsonld(instance) expected <- c("{", " \"@id\": \"_:n1\",", " \"@type\": \"doi:aff130c76e68ead3862e\",", " \"doi:aff130c76e68ead3862e#has_expression\": {", " \"@id\": \"_:n2\",", " \"@type\": \"doi:e0efc41346cda4ba84ca\"", " },", " \"@context\": {", " \"doi\": \"https://doi.org/21.T11969/\",", " \"columns\": \"https://doi.org/21.T11969/0424f6e7026fa4bc2c4a#columns\",", " \"col_number\": \"https://doi.org/21.T11969/65ba00e95e60fb8971e6#number\",", " \"col_titles\": \"https://doi.org/21.T11969/65ba00e95e60fb8971e6#titles\",", " \"rows\": \"https://doi.org/21.T11969/0424f6e7026fa4bc2c4a#rows\",", " \"row_number\": \"https://doi.org/21.T11969/9bf7a8e8909bfd491b38#number\",", " \"row_titles\": \"https://doi.org/21.T11969/9bf7a8e8909bfd491b38#titles\",", " \"cells\": \"https://doi.org/21.T11969/9bf7a8e8909bfd491b38#cells\",", " \"column\": \"https://doi.org/21.T11969/4607bc7c42ac8db29bfc#column\",", " \"value\": \"https://doi.org/21.T11969/4607bc7c42ac8db29bfc#value\",", " \"tab_label\": \"https://doi.org/21.T11969/0424f6e7026fa4bc2c4a#label\"", " }", "} ") expect_equal(capture.output(print(result)), expected) }) test_that("to_jsonld writes an ePIC instance with a list of nested components", { dt <- load_datatype("https://doi.org/21.T11969/aff130c76e68ead3862e") url_1 <- dt$url() url_2 <- dt$url() instance <- dt$data_item(has_expression = c(url_1, url_2)) result <- to_jsonld(instance) expected <- c("{", " \"@id\": \"_:n1\",", " \"@type\": \"doi:aff130c76e68ead3862e\",", " \"doi:aff130c76e68ead3862e#has_expression\": [", " {", " \"@id\": \"_:n2\",", " \"@type\": \"doi:e0efc41346cda4ba84ca\"", " },", " {", " \"@id\": \"_:n3\",", " \"@type\": \"doi:e0efc41346cda4ba84ca\"", " }", " ],", " \"@context\": {", " \"doi\": \"https://doi.org/21.T11969/\",", " \"columns\": \"https://doi.org/21.T11969/0424f6e7026fa4bc2c4a#columns\",", " \"col_number\": \"https://doi.org/21.T11969/65ba00e95e60fb8971e6#number\",", " \"col_titles\": \"https://doi.org/21.T11969/65ba00e95e60fb8971e6#titles\",", " \"rows\": \"https://doi.org/21.T11969/0424f6e7026fa4bc2c4a#rows\",", " \"row_number\": \"https://doi.org/21.T11969/9bf7a8e8909bfd491b38#number\",", " \"row_titles\": \"https://doi.org/21.T11969/9bf7a8e8909bfd491b38#titles\",", " \"cells\": \"https://doi.org/21.T11969/9bf7a8e8909bfd491b38#cells\",", " \"column\": \"https://doi.org/21.T11969/4607bc7c42ac8db29bfc#column\",", " \"value\": \"https://doi.org/21.T11969/4607bc7c42ac8db29bfc#value\",", " \"tab_label\": \"https://doi.org/21.T11969/0424f6e7026fa4bc2c4a#label\"", " }", "} ") expect_equal(capture.output(print(result)), expected) }) test_that("to_jsonld writes an ORKG instance into JSONLD", { dt <- load_datatype("https://orkg.org/template/R758316") instance <- dt$dtreg_test_template2(label = "test") result <- to_jsonld(instance) expected <- c("{", " \"@id\": \"_:n1\",", " \"@type\": \"orkgr:R758316\",", " \"label\": \"test\",", " \"@context\": {", " \"orkgc\": \"https://orkg.org/class/\",", " \"orkgr\": \"https://orkg.org/resource/\",", " \"orkgp\": \"https://orkg.org/property/\",", " \"columns\": \"https://orkg.org/property/CSVW_Columns\",", " \"col_number\": \"https://orkg.org/property/CSVW_Number\",", " \"col_titles\": \"https://orkg.org/property/CSVW_Titles\",", " \"rows\": \"https://orkg.org/property/CSVW_Rows\",", " \"row_number\": \"https://orkg.org/property/CSVW_Number\",", " \"row_titles\": \"https://orkg.org/property/CSVW_Titles\",", " \"cells\": \"https://orkg.org/property/CSVW_Cells\",", " \"column\": \"https://orkg.org/property/CSVW_Column\",", " \"value\": \"https://orkg.org/property/CSVW_Value\",", " \"label\": \"http://www.w3.org/2000/01/rdf-schema#label\",", " \"tab_label\": \"http://www.w3.org/2000/01/rdf-schema#label\"", " }", "} ") expect_equal(capture.output(print(result)), expected) })