R Under development (unstable) (2024-06-15 r86749 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> library(dsb)
> 
> test_check("dsb")
[1] "potential isotype controls detected: "
[1] "MouseIgG2akappaisotype_PROT" "MouseIgG1kappaisotype_PROT" 
[3] "RatIgG2bkIsotype_PROT"       "Mouse IgG2bkIsotype_PROT"   
[1] "correcting ambient protein background noise"
[1] "some proteins with low background variance detected check raw and normalized distributions.  protein stats can be returned with return.stats = TRUE"
[1] "CD185_PROT"
[1] "fitting models to each cell for dsb technical component and removing cell to cell technical noise"
[1] "Not running dsb step II (removal of cell to cell technical noise) Setting use.isotype.control and isotype.control.name.vec to FALSE and NULL"
[1] "potential isotype controls detected: "
[1] "MouseIgG1kappaisotype_PROT"  "MouseIgG2akappaisotype_PROT"
[3] "Mouse IgG2bkIsotype_PROT"    "RatIgG2bkIsotype_PROT"      
[1] "correcting ambient protein background noise"
[1] "some proteins with low background variance detected check raw and normalized distributions.  protein stats can be returned with return.stats = TRUE"
[1] "CD185_PROT"
[1] "correcting ambient protein background noise"
[1] "fitting models to each cell for dsb technical component and removing cell to cell technical noise"
[1] "potential isotype controls detected: "
[1] "MouseIgG1kappaisotype_PROT"  "MouseIgG2akappaisotype_PROT"
[3] "Mouse IgG2bkIsotype_PROT"    "RatIgG2bkIsotype_PROT"      
[1] "correcting ambient protein background noise"
[1] "fitting models to each cell for dsb technical component and removing cell to cell technical noise"
[1] "returning results in a list; normalized matrix accessed x$dsb_normalized_matrix"
[1] "potential isotype controls detected: "
[1] "MouseIgG1kappaisotype_PROT"  "MouseIgG2akappaisotype_PROT"
[3] "Mouse IgG2bkIsotype_PROT"    "RatIgG2bkIsotype_PROT"      
[1] "correcting ambient protein background noise"
[1] "fitting models to each cell for dsb technical component and removing cell to cell technical noise"
[1] "returning results in a list; normalized matrix accessed x$dsb_normalized_matrix"
[1] "fitting models to each cell for dsb technical component and removing cell to cell technical noise"
[1] "returning stats and results in a list; access normalized matrix with x$dsb_normalized_matrix"
[1] "Not running dsb step II (removal of cell to cell technical noise) Setting use.isotype.control and isotype.control.name.vec to FALSE and NULL"
[1] "potential isotype controls detected: "
[1] "MouseIgG1kappaisotype_PROT"  "MouseIgG2akappaisotype_PROT"
[3] "Mouse IgG2bkIsotype_PROT"    "RatIgG2bkIsotype_PROT"      
[1] "potential isotype controls detected: "
[1] "MouseIgG1kappaisotype_PROT"  "MouseIgG2akappaisotype_PROT"
[3] "Mouse IgG2bkIsotype_PROT"    "RatIgG2bkIsotype_PROT"      
[1] "fitting models to each cell for dsb technical component and removing cell to cell technical noise"
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 22 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
   5.57    0.26    5.82