#------------------------------------------------------------------------------- # Copyright (c) 2019-2022 University of Newcastle upon Tyne. All rights reserved. # # This program and the accompanying materials # are made available under the terms of the GNU Public License v3.0. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . #------------------------------------------------------------------------------- # # Set up # context("aucDS::smk::setup") # # Tests # test_that("aucDS", { D <- read.csv(file = 'data_files/DASIM/DASIM1.csv') model <- glm(formula = D$DIS_DIAB~D$GENDER+D$PM_BMI_CONTINUOUS, family = 'binomial') pred <- predict(object = model, type = "link") res <- aucDS(pred = pred, y = model$y) expect_equal(class(res), "list") expect_length(res, 2) expect_equal(class(res$AUC), "numeric") expect_equal(res$AUC, 0.6767515, tolerance=1e-07) expect_equal(class(res$se), "numeric") expect_equal(res$se, 0.02065186, tolerance=1e-08) }) # # Done # context("aucDS::smk::shutdown") context("aucDS::smk::done")