* using log directory ‘/srv/hornik/tmp/CRAN_pretest/dsBase.Rcheck’ * using R Under development (unstable) (2024-11-21 r87360) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.1 (1) Debian flang-new version 19.1.1 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘dsBase/DESCRIPTION’ ... OK * this is package ‘dsBase’ version ‘6.3.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/5s] NOTE Maintainer: ‘DataSHIELD Developers ’ New submission Possibly misspelled words in DESCRIPTION: DataSHIELD (2:8, 3:14) Unknown, possibly misspelled, fields in DESCRIPTION: ‘AggregateMethods’ ‘AssignMethods’ ‘Options’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "DataSHIELD", family = "Developers", role = c("aut", "cre"), email = "datashield@liverpool.ac.uk") as necessary. Size of tarball: 5059946 bytes * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘dsBase’ can be installed ... [9s/9s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [17s/17s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking examples ... NONE * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [127s/127s] OK Running ‘testthat.R’ [127s/127s] * checking PDF version of manual ... [6s/6s] WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: ! LaTeX Error: There's no line here to end. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... * checking PDF version of manual without index ... ERROR * checking HTML version of manual ... [2s/2s] OK * checking for non-standard things in the check directory ... NOTE Found the following files/directories: ‘dsBase-manual.tex’ * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 WARNING, 2 NOTEs