#------------------------------------------------------------------------------- # Copyright (c) 2018-2022 University of Newcastle upon Tyne. All rights reserved. # # This program and the accompanying materials # are made available under the terms of the GNU Public License v3.0. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . #------------------------------------------------------------------------------- # # Set up # context("ds.rm::smk::setup") connect.studies.dataset.survival(list("survtime", "time.id", "female")) test_that("setup", { ds_expect_variables(c("D")) }) # # Tests # context("ds.rm::smk") test_that("simple test", { res1 <- ds.rm("nonexistant_object") expect_length(res1, 3) expect_length(res1$survival1, 4) expect_equal(res1$survival1$return.message, "Object(s) 'nonexistant_object' which are missing.") expect_equal(res1$survival1$deleted.objects, "") expect_equal(res1$survival1$missing.objects, "nonexistant_object") expect_equal(res1$survival1$problem.objects, "") expect_length(res1$survival2, 4) expect_equal(res1$survival2$return.message, "Object(s) 'nonexistant_object' which are missing.") expect_equal(res1$survival2$deleted.objects, "") expect_equal(res1$survival2$missing.objects, "nonexistant_object") expect_equal(res1$survival2$problem.objects, "") expect_length(res1$survival3, 4) expect_equal(res1$survival3$return.message, "Object(s) 'nonexistant_object' which are missing.") expect_equal(res1$survival3$deleted.objects, "") expect_equal(res1$survival3$missing.objects, "nonexistant_object") expect_equal(res1$survival3$problem.objects, "") ds.rbind(c("D$survtime", "D$time.id", "D$female"), newobj="existing_object") res2 <- ds.rm("existing_object") expect_length(res2, 3) expect_length(res2$survival1, 4) expect_equal(res2$survival1$return.message, "Object(s) 'existing_object' was deleted.") expect_equal(res2$survival1$deleted.objects, "existing_object") expect_equal(res2$survival1$missing.objects, "") expect_equal(res2$survival1$problem.objects, "") expect_length(res2$survival2, 4) expect_equal(res2$survival2$return.message, "Object(s) 'existing_object' was deleted.") expect_equal(res2$survival1$deleted.objects, "existing_object") expect_equal(res2$survival1$missing.objects, "") expect_equal(res2$survival1$problem.objects, "") expect_length(res2$survival3, 4) expect_equal(res2$survival3$return.message, "Object(s) 'existing_object' was deleted.") expect_equal(res2$survival1$deleted.objects, "existing_object") expect_equal(res2$survival1$missing.objects, "") expect_equal(res2$survival1$problem.objects, "") }) context("ds.rm::smk") test_that("multiple test", { res1 <- ds.rm("nonexistant_object1,nonexistant_object2") expect_length(res1, 3) expect_length(res1$survival1, 4) expect_equal(res1$survival1$return.message, "Object(s) 'nonexistant_object1,nonexistant_object2' which are missing.") expect_equal(res1$survival1$deleted.objects, "") expect_equal(res1$survival1$missing.objects, "nonexistant_object1,nonexistant_object2") expect_equal(res1$survival1$problem.objects, "") expect_length(res1$survival2, 4) expect_equal(res1$survival2$return.message, "Object(s) 'nonexistant_object1,nonexistant_object2' which are missing.") expect_equal(res1$survival2$deleted.objects, "") expect_equal(res1$survival2$missing.objects, "nonexistant_object1,nonexistant_object2") expect_equal(res1$survival2$problem.objects, "") expect_length(res1$survival3, 4) expect_equal(res1$survival3$return.message, "Object(s) 'nonexistant_object1,nonexistant_object2' which are missing.") expect_equal(res1$survival3$deleted.objects, "") expect_equal(res1$survival3$missing.objects, "nonexistant_object1,nonexistant_object2") expect_equal(res1$survival3$problem.objects, "") ds.rbind(c("D$survtime", "D$time.id", "D$female"), newobj="existing_object1") ds.rbind(c("D$survtime", "D$time.id", "D$female"), newobj="existing_object2") res2 <- ds.rm("existing_object1,existing_object2") expect_length(res2, 3) expect_length(res2$survival1, 4) expect_equal(res2$survival1$return.message, "Object(s) 'existing_object1,existing_object2' was deleted.") expect_equal(res2$survival1$deleted.objects, "existing_object1,existing_object2") expect_equal(res2$survival1$missing.objects, "") expect_equal(res2$survival1$problem.objects, "") expect_length(res2$survival2, 4) expect_equal(res2$survival2$return.message, "Object(s) 'existing_object1,existing_object2' was deleted.") expect_equal(res2$survival1$deleted.objects, "existing_object1,existing_object2") expect_equal(res2$survival1$missing.objects, "") expect_equal(res2$survival1$problem.objects, "") expect_length(res2$survival3, 4) expect_equal(res2$survival3$return.message, "Object(s) 'existing_object1,existing_object2' was deleted.") expect_equal(res2$survival1$deleted.objects, "existing_object1,existing_object2") expect_equal(res2$survival1$missing.objects, "") expect_equal(res2$survival1$problem.objects, "") ds.rbind(c("D$survtime", "D$time.id", "D$female"), newobj="existing_object3") res3 <- ds.rm("existing_object3,nonexisting_object3") expect_length(res3, 3) expect_length(res3$survival1, 4) expect_equal(res3$survival1$return.message, "Object(s) 'existing_object3' was deleted. 'nonexisting_object3' which are missing.") expect_equal(res3$survival1$deleted.objects, "existing_object3") expect_equal(res3$survival1$missing.objects, "nonexisting_object3") expect_equal(res3$survival1$problem.objects, "") expect_length(res3$survival2, 4) expect_equal(res3$survival2$return.message, "Object(s) 'existing_object3' was deleted. 'nonexisting_object3' which are missing.") expect_equal(res3$survival1$deleted.objects, "existing_object3") expect_equal(res3$survival1$missing.objects, "nonexisting_object3") expect_equal(res3$survival1$problem.objects, "") expect_length(res3$survival3, 4) expect_equal(res3$survival3$return.message, "Object(s) 'existing_object3' was deleted. 'nonexisting_object3' which are missing.") expect_equal(res3$survival1$deleted.objects, "existing_object3") expect_equal(res3$survival1$missing.objects, "nonexisting_object3") expect_equal(res3$survival1$problem.objects, "") }) # # Done # context("ds.rm::smk::shutdown") test_that("shutdown", { ds_expect_variables(c("D")) }) disconnect.studies.dataset.survival() context("ds.rm::smk::done")