#------------------------------------------------------------------------------- # Copyright (c) 2018-2022 University of Newcastle upon Tyne. All rights reserved. # # This program and the accompanying materials # are made available under the terms of the GNU Public License v3.0. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . #------------------------------------------------------------------------------- # # Set up # context("ds.dataFrameSubset::smk::setup") connect.studies.dataset.cnsim(list("LAB_TSC", "LAB_HDL", "PM_BMI_CATEGORICAL")) test_that("setup", { ds_expect_variables(c("D")) }) # # Tests # context("ds.dataFrameSubset::smk::create a subset dataframe") test_that("dataFrameSubset_exists", { myvectors <- c('D$LAB_TSC', 'D$LAB_HDL') ds.dataFrame(x=myvectors, newobj="unsubset_df") res.dim1 <- ds.dim('unsubset_df') expect_length(res.dim1, 4) expect_length(res.dim1$`dimensions of unsubset_df in sim1`, 2) expect_equal(res.dim1$`dimensions of unsubset_df in sim1`[1], 2163) expect_equal(res.dim1$`dimensions of unsubset_df in sim1`[2], 2) expect_length(res.dim1$`dimensions of unsubset_df in sim2`, 2) expect_equal(res.dim1$`dimensions of unsubset_df in sim2`[1], 3088) expect_equal(res.dim1$`dimensions of unsubset_df in sim2`[2], 2) expect_length(res.dim1$`dimensions of unsubset_df in sim3`, 2) expect_equal(res.dim1$`dimensions of unsubset_df in sim3`[1], 4128) expect_equal(res.dim1$`dimensions of unsubset_df in sim3`[2], 2) res <- ds.dataFrameSubset(df.name="unsubset_df", V1.name="D$LAB_TSC", V2.name="D$LAB_HDL", Boolean.operator="!=", newobj="subset_df") res.dim2 <- ds.dim('subset_df') expect_length(res.dim2, 4) expect_length(res.dim2$`dimensions of subset_df in sim1`, 2) expect_equal(res.dim2$`dimensions of subset_df in sim1`[1], 1803) expect_equal(res.dim2$`dimensions of subset_df in sim1`[2], 2) expect_length(res.dim2$`dimensions of subset_df in sim2`, 2) expect_equal(res.dim2$`dimensions of subset_df in sim2`[1], 2533) expect_equal(res.dim2$`dimensions of subset_df in sim2`[2], 2) expect_length(res.dim2$`dimensions of subset_df in sim3`, 2) expect_equal(res.dim2$`dimensions of subset_df in sim3`[1], 3472) expect_equal(res.dim2$`dimensions of subset_df in sim3`[2], 2) expect_length(res, 2) expect_equal(res$is.object.created, "A data object has been created in all specified data sources") expect_equal(res$validity.check, " appears valid in all sources") }) context("ds.dataFrameSubset::smk::create a subset dataframe, based on scalar") test_that("dataFrameSubset_exists scalar", { myvectors <- c('D$LAB_TSC', 'D$LAB_HDL', 'D$PM_BMI_CATEGORICAL') ds.dataFrame(x=myvectors, newobj="unsubset_df") res.dim1 <- ds.dim('unsubset_df') expect_length(res.dim1, 4) expect_length(res.dim1$`dimensions of unsubset_df in sim1`, 2) expect_equal(res.dim1$`dimensions of unsubset_df in sim1`[1], 2163) expect_equal(res.dim1$`dimensions of unsubset_df in sim1`[2], 3) expect_length(res.dim1$`dimensions of unsubset_df in sim2`, 2) expect_equal(res.dim1$`dimensions of unsubset_df in sim2`[1], 3088) expect_equal(res.dim1$`dimensions of unsubset_df in sim2`[2], 3) expect_length(res.dim1$`dimensions of unsubset_df in sim3`, 2) expect_equal(res.dim1$`dimensions of unsubset_df in sim3`[1], 4128) expect_equal(res.dim1$`dimensions of unsubset_df in sim3`[2], 3) res <- ds.dataFrameSubset(df.name="unsubset_df", V1.name="D$PM_BMI_CATEGORICAL", V2.name="3", Boolean.operator="!=", newobj="subset_df") res.dim2 <- ds.dim('subset_df') expect_length(res.dim2, 4) expect_length(res.dim2$`dimensions of subset_df in sim1`, 2) expect_equal(res.dim2$`dimensions of subset_df in sim1`[1], 1457) expect_equal(res.dim2$`dimensions of subset_df in sim1`[2], 3) expect_length(res.dim2$`dimensions of subset_df in sim2`, 2) expect_equal(res.dim2$`dimensions of subset_df in sim2`[1], 2072) expect_equal(res.dim2$`dimensions of subset_df in sim2`[2], 3) expect_length(res.dim2$`dimensions of subset_df in sim3`, 2) expect_equal(res.dim2$`dimensions of subset_df in sim3`[1], 2769) expect_equal(res.dim2$`dimensions of subset_df in sim3`[2], 3) expect_length(res, 2) expect_equal(res$is.object.created, "A data object has been created in all specified data sources") expect_equal(res$validity.check, " appears valid in all sources") }) # # Done # context("ds.dataFrameSubset::smk::shutdown") test_that("shutdown", { ds_expect_variables(c("D", "unsubset_df", "subset_df")) }) disconnect.studies.dataset.cnsim() context("ds.dataFrameSubset::smk::down")