R Under development (unstable) (2024-10-20 r87250 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
>
> testSkeletonGit2r <- function(wd) {
+ # options(error=traceback)
+
+ # make a package to test with
+ .foofn <- function() "foo"
+ utils::package.skeleton(name = "foo", list=".foofn", environment = environment(), path=wd)
+ print(dir(wd, recursive = TRUE))
+
+ message("building")
+
+ #https://github.com/r-lib/testthat/issues/129
+ R_TESTS=Sys.getenv("R_TESTS")
+ Sys.setenv(R_TESTS="")
+ cwd <- getwd()
+ setwd(wd)
+ cmd <- sprintf("%s/bin%s/R CMD build foo --no-manual",
+ Sys.getenv("R_HOME"), Sys.getenv("R_ARCH_BIN"))
+ system(cmd)
+ setwd(cwd)
+ Sys.setenv(R_TESTS=R_TESTS)
+ message("dratting")
+
+ # make a repo to test with
+ rdir <- file.path(wd, "drat")
+ cat("<!doctype html><title>empty</title>", file=file.path(wd, "index.html"))
+
+ dir.create(rdir)
+ repo <- git2r::init(rdir)
+ git2r::config(repo, user.name="Alice", user.email="alice@example.org")
+ cat("foo", file=file.path(rdir, "README"))
+ cat("<!doctype html><title>empty</title>", file=file.path(rdir, "index.html"))
+ git2r::add(repo, "README")
+ git2r::add(repo, "index.html")
+ comm <- git2r::commit(repo, "init")
+
+ location <- getOption("dratBranch", "gh-pages")
+
+ if (location == "gh-pages") {
+ git2r::branch_create(comm,"gh-pages")
+ } else {
+ ddir <- file.path(rdir, "docs")
+ if (!dir.exists(ddir)) dir.create(ddir)
+ }
+
+ # finally add the package
+ drat::insertPackage(file = file.path(wd, "foo_1.0.tar.gz"), repodir = rdir, commit = "test")
+ res <- list(status = git2r::status(repo),
+ dir = unique(dirname(dir(rdir, recursive = TRUE))))
+ if(!all(lengths(res$status) == 0L)){
+ stop("Unstaged files")
+ }
+ if (location == "gh-pages") {
+ if (!all(c(".","src/contrib") %in% res$dir)) stop("Wrong dir structure")
+ } else {
+ if (!all(c(".","docs/src/contrib") %in% res$dir)) stop("Wrong dir structure")
+ }
+ rdir
+ }
>
> testRepoActions <- function(repodir){
+ if (!dir.exists(file.path(repodir, "docs"))) dir.create(file.path(repodir, "docs"))
+ cat("<!doctype html><title>empty</title>", file=file.path(repodir, "docs", "index.html"))
+ src_files <- list.files(system.file("extdata","src", package = "drat"),
+ pattern = "foo*",
+ full.names = TRUE)
+ drat::insertPackage(file = src_files[2], repodir = repodir)
+ drat::insertPackage(file = src_files[3], repodir = repodir)
+ repoinfo <- drat:::getRepoInfo(repopath = repodir)
+ if(nrow(repoinfo) != 3L){
+ stop("Not all package files found")
+ }
+ #
+ location <- getOption("dratBranch", "gh-pages")
+
+ bin_files_4_0 <- list.files(system.file("extdata", "4.0", package = "drat"),
+ pattern = "foo*",
+ full.names = TRUE)
+ drat::insertPackages(file = bin_files_4_0, repodir = repodir)
+ res <- list(dir = unique(dirname(dir(repodir, recursive = TRUE))))
+ if (location == "gh-pages") {
+ if (!all(c(".","src/contrib","bin/macosx/contrib/4.0","bin/windows/contrib/4.0") %in% res$dir))
+ stop("Wrong dir structure")
+ } else {
+ if (!all(c(".","docs/src/contrib","docs/bin/macosx/contrib/4.0","docs/bin/windows/contrib/4.0") %in% res$dir))
+ stop("Wrong dir structure")
+ }
+ repoinfo <- drat:::getRepoInfo(repopath = repodir, version = "4.0")
+ if(nrow(repoinfo) != 9L){
+ stop("Wrong package files found")
+ }
+ if(sum(repoinfo$newest) != 3L){
+ stop("Package 'newest' status wrong")
+ }
+ #
+ bin_files_3_6 <- list.files(system.file("extdata", "3.6", package = "drat"),
+ pattern = "foo*",
+ full.names = TRUE)
+ drat::insertPackages(file = bin_files_3_6, repodir = repodir)
+ res <- list(dir = unique(dirname(dir(repodir, recursive = TRUE))))
+ if (location == "gh-pages") {
+ if (!all(c(".","src/contrib","bin/macosx/contrib/4.0","bin/windows/contrib/4.0",
+ "bin/macosx/el-capitan/contrib/3.6") %in% res$dir))
+ stop("Wrong dir structure")
+ } else {
+ if (!all(c(".","docs/src/contrib","docs/bin/macosx/contrib/4.0","docs/bin/windows/contrib/4.0",
+ "docs/bin/macosx/el-capitan/contrib/3.6") %in% res$dir))
+ stop("Wrong dir structure")
+ }
+ #
+ repoinfo <- drat:::getRepoInfo(repopath = repodir, version = "3.6")
+ repoinfo2 <- drat::pruneRepo(repopath = repodir, version = "3.6")
+ if(!all(repoinfo == repoinfo2)){
+ stop("test run of pruneRepo changed files")
+ }
+ repoinfo <- drat::pruneRepo(repopath = repodir, remove = TRUE, version = "4.0")
+ if(nrow(repoinfo) != 3L){
+ stop("Wrong package files found after pruning")
+ }
+ #
+ repoinfo <- drat::pruneRepo(repopath = repodir, remove = TRUE)
+ #
+ repoinfo <- drat:::getRepoInfo(repopath = repodir, version = NA,
+ type = c("source","binary"))
+
+ if(getRversion() < package_version("4.0")){
+ if(nrow(repoinfo) != 4L){
+ stop("Wrong package files found after pruning for version = NA")
+ }
+ # R 4.1 and 4.2 produces one extra row in the repoinfo compared to R 4.3:
+ } else if(getRversion() < package_version("4.3")){
+ if(nrow(repoinfo) != 7L){
+ #stop("Wrong package files found after pruning for version = NA")
+ warning("Wrong package files found after pruning for version = NA")
+ }
+ } else {
+ if(nrow(repoinfo) != 6L){
+ #stop("Wrong package files found after pruning for version = NA")
+ warning("Wrong package files found after pruning for version = NA")
+ }
+ }
+ repoinfo2 <- drat::pruneRepoForAllRversions(repopath = repodir, remove = TRUE)
+ if(nrow(repoinfo2) != 4L){
+ stop("Wrong package files found after pruning vor all r versions")
+ }
+ #
+ drat::insertPackages(file = src_files, repodir = repodir)
+ drat::insertPackages(file = bin_files_3_6, repodir = repodir)
+ drat::insertPackages(file = bin_files_4_0, repodir = repodir)
+ #
+ drat::archivePackages(repopath = repodir, type = "source")
+ res <- list(dir = unique(dirname(dir(repodir, recursive = TRUE))))
+ if (location == "gh-pages") {
+ if (!all(c(".","src/contrib","bin/macosx/contrib/4.0","bin/windows/contrib/4.0",
+ "bin/macosx/el-capitan/contrib/3.6", "src/contrib/Archive/foo") %in% res$dir))
+ stop("Wrong dir structure")
+ } else {
+ if (!all(c(".","docs/src/contrib","docs/bin/macosx/contrib/4.0","docs/bin/windows/contrib/4.0",
+ "docs/bin/macosx/el-capitan/contrib/3.6", "docs/src/contrib/Archive/foo") %in% res$dir))
+ stop("Wrong dir structure")
+ }
+ drat::insertPackages(file = src_files[3], repodir = repodir, action="archive")
+ #
+ drat::archivePackages(repopath = repodir, type = "binary", version = "3.6")
+ res <- list(dir = unique(dirname(dir(repodir, recursive = TRUE))))
+ if (location == "gh-pages") {
+ if (!all(c(".","src/contrib","bin/macosx/contrib/4.0","bin/windows/contrib/4.0",
+ "bin/macosx/el-capitan/contrib/3.6",
+ "bin/macosx/el-capitan/contrib/3.6/Archive/foo") %in% res$dir))
+ stop("Wrong dir structure")
+ } else {
+ if (!all(c(".","docs/src/contrib","docs/bin/macosx/contrib/4.0","docs/bin/windows/contrib/4.0",
+ "docs/bin/macosx/el-capitan/contrib/3.6",
+ "docs/bin/macosx/el-capitan/contrib/3.6/Archive/foo") %in% res$dir))
+ stop("Wrong dir structure")
+ }
+ #
+ drat::archivePackages(repopath = repodir, type = "win.binary", version = "4.0")
+ res <- list(dir = unique(dirname(dir(repodir, recursive = TRUE))))
+ if (location == "gh-pages") {
+ if (!all(c(".","src/contrib","bin/macosx/contrib/4.0","bin/windows/contrib/4.0",
+ "bin/macosx/el-capitan/contrib/3.6",
+ "bin/macosx/el-capitan/contrib/3.6/Archive/foo",
+ "bin/windows/contrib/4.0/Archive/foo") %in% res$dir))
+ stop("Wrong dir structure")
+ } else {
+ if (!all(c(".","docs/src/contrib","docs/bin/macosx/contrib/4.0","docs/bin/windows/contrib/4.0",
+ "docs/bin/macosx/el-capitan/contrib/3.6",
+ "docs/bin/macosx/el-capitan/contrib/3.6/Archive/foo",
+ "docs/bin/windows/contrib/4.0/Archive/foo") %in% res$dir))
+ stop("Wrong dir structure")
+ }
+ #
+ repoinfo <- drat:::getRepoInfo(repopath = repodir, version=NA)
+ if(nrow(repoinfo) != 6L){
+ stop("Wrong package files found for getRepoInfo")
+ }
+ drat::insertPackages(file = src_files, repodir = repodir)
+ drat::insertPackages(file = bin_files_3_6, repodir = repodir)
+ drat::insertPackages(file = bin_files_4_0, repodir = repodir)
+ repoinfo <- drat:::getRepoInfo(repopath = repodir, version = "4.0")
+ if(nrow(repoinfo) != 10L){
+ stop("Wrong package files found for getRepoInfo after fill up")
+ }
+ #
+ drat::archivePackages(repopath = repodir, version = "4.0")
+ repoinfo <- drat:::getRepoInfo(repopath = repodir, version = "4.0")
+ if(nrow(repoinfo) != 3L){
+ stop("Wrong package files found for getRepoInfo after archiving")
+ }
+ res <- list(dir = unique(dirname(dir(repodir, recursive = TRUE))))
+ if (location == "gh-pages") {
+ if (!all(c(".","src/contrib","bin/macosx/contrib/4.0","bin/windows/contrib/4.0",
+ "bin/macosx/el-capitan/contrib/3.6",
+ "bin/macosx/el-capitan/contrib/3.6/Archive/foo",
+ "bin/windows/contrib/4.0/Archive/foo",
+ "src/contrib/Archive/foo") %in% res$dir))
+ stop("Wrong dir structure")
+ } else {
+ if (!all(c(".","docs/src/contrib","docs/bin/macosx/contrib/4.0","docs/bin/windows/contrib/4.0",
+ "docs/bin/macosx/el-capitan/contrib/3.6",
+ "docs/bin/macosx/el-capitan/contrib/3.6/Archive/foo",
+ "docs/bin/windows/contrib/4.0/Archive/foo",
+ "docs/src/contrib/Archive/foo") %in% res$dir))
+ stop("Wrong dir structure")
+ }
+ #
+ repoinfo <- drat:::getRepoInfo(repopath = repodir, version = NA)
+ if(nrow(repoinfo) != 6L){
+ stop("Wrong package files found for getRepoInfo with version = NA")
+ }
+ drat::archivePackagesForAllRversions(repopath = repodir)
+ repoinfo <- drat:::getRepoInfo(repopath = repodir, version = NA)
+ if(nrow(repoinfo) != 4L){
+ stop("Wrong package files found for getRepoInfo after archiving for all R versions")
+ }
+ # test insertPackage optional arguments
+ drat::insertPackages(file = src_files, repodir = repodir, latestOnly = TRUE)
+ pkgsrds <- ifelse(location == "gh-pages", "src/contrib/PACKAGES.rds", "docs/src/contrib/PACKAGES.rds")
+ PACKAGES <- readRDS(file.path(repodir, pkgsrds))
+ if(nrow(PACKAGES) != 1L){
+ stop("Wrong number of packages written to 'PACKAGES': ", nrow(PACKAGES), " != 1L (A)")
+ }
+ drat::insertPackages(file = src_files, repodir = repodir)
+ PACKAGES <- readRDS(file.path(repodir, pkgsrds))
+ if (nrow(PACKAGES) != 4L){
+ stop("Wrong number of packages written to 'PACKAGES': ", nrow(PACKAGES), " != 4L (B)")
+ }
+
+ repodir2 <- file.path(repodir, if (location == "gh-pages") "" else "docs")
+ # test updateRepo optional arguments -- now seems to update only one ?
+ drat::insertPackages(file = src_files, repodir = repodir, latestOnly = TRUE)
+ drat::updateRepo(repopath = repodir2)
+ PACKAGES <- readRDS(file.path(repodir, pkgsrds))
+ if (nrow(PACKAGES) != 4L){
+ stop("Wrong number of packages updated to 'PACKAGES': ", nrow(PACKAGES), " != 4L (C)")
+ }
+
+ drat::insertPackages(file = src_files, repodir = repodir, latestOnly = TRUE)
+ drat::updateRepo(repopath = repodir, latestOnly = TRUE)
+ PACKAGES <- readRDS(file.path(repodir, pkgsrds))
+ if (nrow(PACKAGES) != 1L){
+ stop("Wrong number of packages updated to 'PACKAGES': ", nrow(PACKAGES), " != 3L (D)")
+ }
+
+ drat::insertPackages(file = src_files, repodir = repodir)
+ drat::updateRepo(repopath = repodir, latestOnly = TRUE)
+ PACKAGES <- readRDS(file.path(repodir, pkgsrds))
+ if (nrow(PACKAGES) != 4L){
+ stop("Wrong number of packages updated to 'PACKAGES': ", nrow(PACKAGES), " != 4L (E)")
+ }
+
+ file.path(repodir2, "src", "contrib", "foo_1.0.tar.gz")
+ file.remove(file.path(repodir2, "src", "contrib", "foo_1.0.tar.gz"))
+ drat::updateRepo(repopath = repodir2, latestOnly = TRUE)
+ PACKAGES <- readRDS(file.path(repodir, pkgsrds))
+ if(nrow(PACKAGES) != 3L){
+ stop("Wrong number of packages updated to 'PACKAGES':", nrow(PACKAGES), "!= 3L (F)")
+ }
+ }
>
> runTest <- function(wd, location = "gh-pages"){
+ options("dratBranch" = location)
+ repodir <- testSkeletonGit2r(wd)
+ testRepoActions(repodir)
+ unlink(file.path(wd,"foo"), recursive = TRUE)
+ unlink(file.path(wd,"drat"), recursive = TRUE)
+ }
>
> wd <- tempdir()
> if (requireNamespace("git2r", quietly=TRUE)) {
+ runTest(wd, "gh-pages")
+ runTest(wd, "docs")
+ }
Creating directories ...
Creating DESCRIPTION ...
Creating NAMESPACE ...
Creating Read-and-delete-me ...
Saving functions and data ...
Making help files ...
Done.
Further steps are described in 'D:\temp\Rtmp8OUZLh/foo/Read-and-delete-me'.
[1] "foo/DESCRIPTION" "foo/NAMESPACE" "foo/R/foo-internal.R"
[4] "foo/Read-and-delete-me" "foo/man/foo-package.Rd"
building
* checking for file 'foo/DESCRIPTION' ... OK
* preparing 'foo':
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building 'foo_1.0.tar.gz'
dratting
Added and committed foo_1.0.tar.gz plus PACKAGES files. Still need to push.
Creating directories ...
Creating DESCRIPTION ...
Creating NAMESPACE ...
Creating Read-and-delete-me ...
Saving functions and data ...
Making help files ...
Done.
Further steps are described in 'D:\temp\Rtmp8OUZLh/foo/Read-and-delete-me'.
[1] "foo/DESCRIPTION" "foo/NAMESPACE" "foo/R/foo-internal.R"
[4] "foo/Read-and-delete-me" "foo/man/foo-package.Rd" "foo_1.0.tar.gz"
[7] "index.html"
building
* checking for file 'foo/DESCRIPTION' ... OK
* preparing 'foo':
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building 'foo_1.0.tar.gz'
dratting
The repository 'D:\temp\Rtmp8OUZLh/drat/docs' does not have a top-level 'index.html' file. Consider adding a simple file
to avoid 404 results on the repo. A one-line example is '<!doctype html><title>empty</title>'.
Added and committed foo_1.0.tar.gz plus PACKAGES files. Still need to push.
There were 11 warnings (use warnings() to see them)
>
> ## TODO Use
> ## > as.package_version(system("sw_vers -productVersion", intern = TRUE)) == 13.1
> ## [1] TRUE
> ## if on Darwin and x86_64 (as in tiledb-r's configure.ac with
> ## uname=`uname`
> ## machine=`uname -m`
> ## if test x"${uname}" = x"Darwin" -a x"${machine}" = x"x86_64"; then
> ## which we can rework as R system() calls.
> ##
> ## Use https://en.wikipedia.org/wiki/MacOS_version_history for mininum versions
> ## Using macOS 11 ("Big Sur") may work
>
> proc.time()
user system elapsed
3.17 0.87 31.85