* using log directory ‘/srv/hornik/tmp/CRAN_pretest/dr.Rcheck’ * using R Under development (unstable) (2025-03-25 r88054) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (1+b1) Debian flang-new version 19.1.7 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘dr/DESCRIPTION’ ... OK * this is package ‘dr’ version ‘3.0.11’ * checking CRAN incoming feasibility ... [4s/5s] NOTE Maintainer: ‘Sanford Weisberg <sandy@umn.edu>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Sanford", family = "Weisberg,", role = "aut", email = "sandy@umn.edu"), person(given = "Sanford", family = "Weisberg", role = "cre", email = "sandy@umn.edu")) as necessary. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Found the following (possibly) invalid URLs: URL: http://www.stat.umn.edu/arc (moved to http://www.stat.umn.edu/arc/) From: man/dr.Rd Status: 301 Message: Moved Permanently URL: https://cran.r-project.org/web/packages/dr/index.html From: DESCRIPTION Status: 200 Message: OK CRAN URL not in canonical form The canonical URL of the CRAN page for a package is https://CRAN.R-project.org/package=pkgname For content that is 'Moved Permanently', please change http to https, add trailing slashes, or replace the old by the new URL. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘dr’ can be installed ... [2s/2s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... NOTE Apparent methods for exported generics not registered: dr.test.ire dr.test.psave dr.test.psir dr.y.name See section ‘Registering S3 methods’ in the ‘Writing R Extensions’ manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s/5s] NOTE Found if() conditions comparing class() to string: File ‘dr/R/dr.R’: if (class(hypothesis) == "formula") ... File ‘dr/R/dr.R’: if (class(hypothesis) == "formula") ... File ‘dr/R/dr.R’: if (class(hypothesis) == "formula") ... File ‘dr/R/dr.R’: if (class(hypothesis) == "formula") ... File ‘dr/R/dr.R’: if (class(hypothesis) == "formula") ... File ‘dr/R/psave.R’: if (class(hypothesis) == "formula") ... File ‘dr/R/psir.R’: if (class(hypothesis) == "formula") ... Use inherits() (or maybe is()) instead. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... WARNING Missing link(s) in Rd file 'dr.weights.Rd': ‘MASS::cov.rob’ See section 'Cross-references' in the 'Writing R Extensions' manual. Found the following Rd file(s) with Rd \link{} targets missing package anchors: dr.weights.Rd: MASS::cov.rob Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... WARNING ‘gs+qpdf’ made some significant size reductions: compacted ‘overview.pdf’ from 597Kb to 202Kb consider running tools::compactPDF(gs_quality = "ebook") on these files, or build the source package with --compact-vignettes=both * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [4s/4s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [4s/4s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 WARNINGs, 3 NOTEs