* using log directory ‘/srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck’ * using R Under development (unstable) (2024-09-14 r87148) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (9) Debian flang-new version 18.1.8 (9) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘dotwhisker/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘dotwhisker’ version ‘0.8.3’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [5s/7s] Note_to_CRAN_maintainers Maintainer: ‘Yue Hu ’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘dotwhisker’ can be installed ... [3s/3s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s/7s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [3s/3s] ERROR Running examples in ‘dotwhisker-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: small_multiple > ### Title: Generate a 'Small Multiple' Plot of Regression Results > ### Aliases: small_multiple > > ### ** Examples > > > m1 <- lm(mpg ~ wt + cyl + disp + gear, data = mtcars) > m2 <- update(m1, . ~ . + hp) > > > # Generate a 'small multiple' plot > small_multiple(list(m1, m2)) Error in `$<-.data.frame`(`*tmp*`, "x_ind", value = c(1L, 1L, 1L, 1L, : replacement has 10 rows, data has 11 Calls: small_multiple -> $<- -> $<-.data.frame Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [12s/12s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘dotwhisker-vignette.Rmd’ using rmarkdown ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/basic-1.png 288x288 pixels, 8 bits/pixel, 255 colors in palette Input IDAT size = 2121 bytes Input file size = 2976 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1854 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1854 Output IDAT size = 1854 bytes (267 bytes decrease) Output file size = 2709 bytes (267 bytes = 8.97% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/ci-1.png 288x288 pixels, 8 bits/pixel, 253 colors in palette Input IDAT size = 2458 bytes Input file size = 3307 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1927 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1927 Output IDAT size = 1927 bytes (531 bytes decrease) Output file size = 2776 bytes (531 bytes = 16.06% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/multipleModels-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11194 bytes Input file size = 11284 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8025 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8025 Output IDAT size = 8025 bytes (3169 bytes decrease) Output file size = 8103 bytes (3181 bytes = 28.19% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/intercept-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 11006 bytes Input file size = 11096 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8248 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8248 Output IDAT size = 8248 bytes (2758 bytes decrease) Output file size = 8326 bytes (2770 bytes = 24.96% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/ggplot-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 9152 bytes Input file size = 9242 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6821 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6821 Output IDAT size = 6821 bytes (2331 bytes decrease) Output file size = 6899 bytes (2343 bytes = 25.35% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/tidyData-1.png 288x288 pixels, 8 bits/pixel, 254 colors in palette Input IDAT size = 2126 bytes Input file size = 2978 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1866 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1866 Output IDAT size = 1866 bytes (260 bytes decrease) Output file size = 2718 bytes (260 bytes = 8.73% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/tidy-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10170 bytes Input file size = 10260 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7144 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7144 Output IDAT size = 7144 bytes (3026 bytes decrease) Output file size = 7222 bytes (3038 bytes = 29.61% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/regularExpression-1.png 288x288 pixels, 8 bits/pixel, 242 colors in palette Input IDAT size = 2369 bytes Input file size = 3185 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1694 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 1694 Output IDAT size = 1694 bytes (675 bytes decrease) Output file size = 2510 bytes (675 bytes = 21.19% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/relabel-1.png 288x288 pixels, 8 bits/pixel, 228 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3349 bytes Input file size = 4123 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2992 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2992 Output IDAT size = 2992 bytes (357 bytes decrease) Output file size = 3070 bytes (1053 bytes = 25.54% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/custom-1.png 288x288 pixels, 8 bits/pixel, 233 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3394 bytes Input file size = 4183 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3042 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3042 Output IDAT size = 3042 bytes (352 bytes decrease) Output file size = 3120 bytes (1063 bytes = 25.41% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/clm-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 4908 bytes Input file size = 4986 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3659 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3659 Output IDAT size = 3659 bytes (1249 bytes decrease) Output file size = 3737 bytes (1249 bytes = 25.05% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/dotwhisker-vignette_files/figure-html/by2sd-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 5566 bytes Input file size = 5644 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4018 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4018 Output IDAT size = 4018 bytes (1548 bytes decrease) Output file size = 4096 bytes (1548 bytes = 27.43% decrease) Quitting from lines 273-308 [brackets] (dotwhisker-vignette.Rmd) Error: processing vignette 'dotwhisker-vignette.Rmd' failed with diagnostics: 'from' must be a finite number --- failed re-building ‘dotwhisker-vignette.Rmd’ --- re-building ‘kl2007_examples.Rmd’ using rmarkdown ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-2-1.png 672x672 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 21594 bytes Input file size = 22476 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20036 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19890 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19890 Output IDAT size = 19890 bytes (1704 bytes decrease) Output file size = 19968 bytes (2508 bytes = 11.16% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-3-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 48668 bytes Input file size = 48806 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38124 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38124 Output IDAT size = 38124 bytes (10544 bytes decrease) Output file size = 38202 bytes (10604 bytes = 21.73% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-4-1.png 672x768 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 26211 bytes Input file size = 27105 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24057 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 24030 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 24030 Output IDAT size = 24030 bytes (2181 bytes decrease) Output file size = 24108 bytes (2997 bytes = 11.06% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-5-1.png 672x768 pixels, 3x8 bits/pixel, RGB Input IDAT size = 61554 bytes Input file size = 61716 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47315 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47315 Output IDAT size = 47315 bytes (14239 bytes decrease) Output file size = 47393 bytes (14323 bytes = 23.21% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-6-1.png 480x864 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 26191 bytes Input file size = 27085 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24023 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24023 Output IDAT size = 24023 bytes (2168 bytes decrease) Output file size = 24101 bytes (2984 bytes = 11.02% decrease) ** Processing: /srv/hornik/tmp/CRAN_pretest/dotwhisker.Rcheck/vign_test/dotwhisker/vignettes/kl2007_examples_files/figure-html/unnamed-chunk-7-1.png 384x864 pixels, 3x8 bits/pixel, RGB Input IDAT size = 65710 bytes Input file size = 65884 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47756 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47756 Output IDAT size = 47756 bytes (17954 bytes decrease) Output file size = 47834 bytes (18050 bytes = 27.40% decrease) --- finished re-building ‘kl2007_examples.Rmd’ SUMMARY: processing the following file failed: ‘dotwhisker-vignette.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs