* installing *source* package 'diversitree' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 12.3.0' using Fortran compiler: 'GNU Fortran (GCC) 12.3.0' using C++ compiler: 'g++.exe (GCC) 12.3.0' g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c GslOdeBase.cpp -o GslOdeBase.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp.h:27, from GslOdeBase.cpp:1: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c GslOdeCompiled.cpp -o GslOdeCompiled.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp.h:27, from GslOdeBase.h:32, from GslOdeCompiled.h:7, from GslOdeCompiled.cpp:1: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c GslOdeR.cpp -o GslOdeR.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp.h:27, from GslOdeBase.h:32, from GslOdeR.h:5, from GslOdeR.cpp:1: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c GslOdeTime.cpp -o GslOdeTime.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp.h:27, from GslOdeBase.h:32, from GslOdeTime.h:9, from GslOdeTime.cpp:1: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Spline.cpp -o Spline.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c TimeMachine.cpp -o TimeMachine.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c asr-joint.c -o asr-joint.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bd-eqs.c -o bd-eqs.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bisse-eqs.c -o bisse-eqs.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bisseness-eqs.c -o bisseness-eqs.o gfortran -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c bucexp.f -o bucexp.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c classe-eqs.c -o classe-eqs.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c continuous.c -o continuous.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c derivs.c -o derivs.o gfortran -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c dgcoov.f -o dgcoov.o gfortran -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c dgexpvi.f -o dgexpvi.o gfortran -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c dgpadm.f -o dgpadm.o gfortran -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c dmexpv.f -o dmexpv.o gfortran -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c dnchbv.f -o dnchbv.o gfortran -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c dsexpv.f -o dsexpv.o gfortran -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c dsexpvi.f -o dsexpvi.o gfortran -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c expm.f -o expm.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c geosse-eqs.c -o geosse-eqs.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hdr.c -o hdr.o gfortran -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c hyperg.f -o hyperg.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c interface.cpp -o interface.o In file included from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/routines.h:26, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:128, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp.h:27, from interface.cpp:1: D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long long int]': D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long long int'} [-Wformat=] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ | | | | int std::streamsize {aka long long int} gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mkn-eqs.c -o mkn-eqs.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mkn-expokit.c -o mkn-expokit.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mkn-meristic-eqs.c -o mkn-meristic-eqs.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mkn-pij.c -o mkn-pij.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c musse-eqs.c -o musse-eqs.o gfortran -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c nucexp.f -o nucexp.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c quasse-eqs-fftC.c -o quasse-eqs-fftC.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c quasse-eqs-mol.c -o quasse-eqs-mol.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rfftw.c -o rfftw.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c scm-mkn.c -o scm-mkn.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c simulate-bisse.c -o simulate-bisse.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c util-matrix.c -o util-matrix.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c util-splines.c -o util-splines.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c util.c -o util.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I. -I/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c zzz.c -o zzz.o g++ -std=gnu++17 -shared -s -static-libgcc -o diversitree.dll tmp.def GslOdeBase.o GslOdeCompiled.o GslOdeR.o GslOdeTime.o Spline.o TimeMachine.o asr-joint.o bd-eqs.o bisse-eqs.o bisseness-eqs.o bucexp.o classe-eqs.o continuous.o derivs.o dgcoov.o dgexpvi.o dgpadm.o dmexpv.o dnchbv.o dsexpv.o dsexpvi.o expm.o geosse-eqs.o hdr.o hyperg.o interface.o mkn-eqs.o mkn-expokit.o mkn-meristic-eqs.o mkn-pij.o musse-eqs.o nucexp.o quasse-eqs-fftC.o quasse-eqs-mol.o rfftw.o scm-mkn.o simulate-bisse.o util-matrix.o util-splines.o util.o zzz.o -L/lib -lgsl -lgslcblas -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -lfftw3 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -lgfortran -lm -lquadmath -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-diversitree/00new/diversitree/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (diversitree)