* using log directory 'd:/RCompile/CRANincoming/R-devel/distfreereg.Rcheck'
* using R Under development (unstable) (2025-05-04 r88189 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'distfreereg/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'distfreereg' version '1.1'
* checking CRAN incoming feasibility ... [11s] NOTE
Maintainer: 'Jesse Miller <mill9116@umn.edu>'

Possibly misspelled words in DESCRIPTION:
  glm (20:14)
  lm (20:10)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'distfreereg' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [16s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [501s] OK
  Running '0_aggregator_matrix.R'
  Comparing '0_aggregator_matrix.Rout' to '0_aggregator_matrix.Rout.save' ... OK
  Running '0_combine_dfr_arg_lists_test.R'
  Comparing '0_combine_dfr_arg_lists_test.Rout' to '0_combine_dfr_arg_lists_test.Rout.save' ... OK
  Running '0_combine_lists_test.R'
  Comparing '0_combine_lists_test.Rout' to '0_combine_lists_test.Rout.save' ... OK
  Running '0_covprod_test.R'
  Comparing '0_covprod_test.Rout' to '0_covprod_test.Rout.save' ... OK
  Running '0_fill_covariance_list_test_01_matrix.R'
  Comparing '0_fill_covariance_list_test_01_matrix.Rout' to '0_fill_covariance_list_test_01_matrix.Rout.save' ... OK
  Running '0_fill_covariance_list_test_02_number.R'
  Comparing '0_fill_covariance_list_test_02_number.Rout' to '0_fill_covariance_list_test_02_number.Rout.save' ... OK
  Running '0_fill_covariance_list_test_03_vector.R'
  Comparing '0_fill_covariance_list_test_03_vector.Rout' to '0_fill_covariance_list_test_03_vector.Rout.save' ... OK
  Running '0_is_named_list_test.R'
  Comparing '0_is_named_list_test.Rout' to '0_is_named_list_test.Rout.save' ... OK
  Running '0_matrix_functions_test.R'
  Comparing '0_matrix_functions_test.Rout' to '0_matrix_functions_test.Rout.save' ... OK
  Running '0_scale_to_01_test.R'
  Comparing '0_scale_to_01_test.Rout' to '0_scale_to_01_test.Rout.save' ... OK
  Running '0_upstar_test.R'
  Comparing '0_upstar_test.Rout' to '0_upstar_test.Rout.save' ... OK
  Running '1_distfreereg_test_01_basic.R'
  Comparing '1_distfreereg_test_01_basic.Rout' to '1_distfreereg_test_01_basic.Rout.save' ... OK
  Running '1_distfreereg_test_02_X_NULL.R'
  Comparing '1_distfreereg_test_02_X_NULL.Rout' to '1_distfreereg_test_02_X_NULL.Rout.save' ... OK
  Running '1_distfreereg_test_03_override_default.R'
  Comparing '1_distfreereg_test_03_override_default.Rout' to '1_distfreereg_test_03_override_default.Rout.save' ... OK
  Running '1_distfreereg_test_04_override_formula.R'
  Comparing '1_distfreereg_test_04_override_formula.Rout' to '1_distfreereg_test_04_override_formula.Rout.save' ... OK
  Running '1_distfreereg_test_05_override_function.R'
  Comparing '1_distfreereg_test_05_override_function.Rout' to '1_distfreereg_test_05_override_function.Rout.save' ... OK
  Running '1_distfreereg_test_06_override_lm.R'
  Comparing '1_distfreereg_test_06_override_lm.Rout' to '1_distfreereg_test_06_override_lm.Rout.save' ... OK
  Running '1_distfreereg_test_07_override_errors.R'
  Comparing '1_distfreereg_test_07_override_errors.Rout' to '1_distfreereg_test_07_override_errors.Rout.save' ... OK
  Running '1_distfreereg_test_08_external_f.R'
  Comparing '1_distfreereg_test_08_external_f.Rout' to '1_distfreereg_test_08_external_f.Rout.save' ... OK
  Running '1_distfreereg_test_09_ordering.R' [22s]
  Comparing '1_distfreereg_test_09_ordering.Rout' to '1_distfreereg_test_09_ordering.Rout.save' ... OK
  Running '1_distfreereg_test_10_ordering_errors.R'
  Comparing '1_distfreereg_test_10_ordering_errors.Rout' to '1_distfreereg_test_10_ordering_errors.Rout.save' ... OK
  Running '1_distfreereg_test_11_test_f_errors.R'
  Comparing '1_distfreereg_test_11_test_f_errors.Rout' to '1_distfreereg_test_11_test_f_errors.Rout.save' ... OK
  Running '1_distfreereg_test_12_update_function.R' [10s]
  Comparing '1_distfreereg_test_12_update_function.Rout' to '1_distfreereg_test_12_update_function.Rout.save' ... OK
  Running '1_distfreereg_test_13_predict.R'
  Comparing '1_distfreereg_test_13_predict.Rout' to '1_distfreereg_test_13_predict.Rout.save' ... OK
  Running '1_distfreereg_test_14_B.R'
  Comparing '1_distfreereg_test_14_B.Rout' to '1_distfreereg_test_14_B.Rout.save' ... OK
  Running '1_distfreereg_test_15_plot.R'
  Comparing '1_distfreereg_test_15_plot.Rout' to '1_distfreereg_test_15_plot.Rout.save' ... OK
  Running '1_distfreereg_test_16_stat_function_errors.R'
  Comparing '1_distfreereg_test_16_stat_function_errors.Rout' to '1_distfreereg_test_16_stat_function_errors.Rout.save' ... OK
  Running '1_distfreereg_test_17_covariance.R'
  Comparing '1_distfreereg_test_17_covariance.Rout' to '1_distfreereg_test_17_covariance.Rout.save' ... OK
  Running '1_distfreereg_test_18_optimization.R'
  Comparing '1_distfreereg_test_18_optimization.Rout' to '1_distfreereg_test_18_optimization.Rout.save' ... OK
  Running '1_distfreereg_test_19_symmetric.R'
  Comparing '1_distfreereg_test_19_symmetric.Rout' to '1_distfreereg_test_19_symmetric.Rout.save' ... OK
  Running '1_distfreereg_test_20_formula_method.R'
  Comparing '1_distfreereg_test_20_formula_method.Rout' to '1_distfreereg_test_20_formula_method.Rout.save' ... OK
  Running '1_distfreereg_test_21_update_default.R'
  Comparing '1_distfreereg_test_21_update_default.Rout' to '1_distfreereg_test_21_update_default.Rout.save' ... OK
  Running '1_distfreereg_test_22_extra_argument_detection.R'
  Comparing '1_distfreereg_test_22_extra_argument_detection.Rout' to '1_distfreereg_test_22_extra_argument_detection.Rout.save' ... OK
  Running '1_distfreereg_test_23_lm_method.R'
  Comparing '1_distfreereg_test_23_lm_method.Rout' to '1_distfreereg_test_23_lm_method.Rout.save' ... OK
  Running '1_distfreereg_test_24_update_formula.R'
  Comparing '1_distfreereg_test_24_update_formula.Rout' to '1_distfreereg_test_24_update_formula.Rout.save' ... OK
  Running '1_distfreereg_test_25_update_lm.R'
  Comparing '1_distfreereg_test_25_update_lm.Rout' to '1_distfreereg_test_25_update_lm.Rout.save' ... OK
  Running '1_distfreereg_test_26_update_default.R' [13s]
  Comparing '1_distfreereg_test_26_update_default.Rout' to '1_distfreereg_test_26_update_default.Rout.save' ... OK
  Running '1_distfreereg_test_27_update_formula.R' [12s]
  Comparing '1_distfreereg_test_27_update_formula.Rout' to '1_distfreereg_test_27_update_formula.Rout.save' ... OK
  Running '1_distfreereg_test_28_update_function.R' [14s]
  Comparing '1_distfreereg_test_28_update_function.Rout' to '1_distfreereg_test_28_update_function.Rout.save' ... OK
  Running '1_distfreereg_test_29_update_lm.R' [11s]
  Comparing '1_distfreereg_test_29_update_lm.Rout' to '1_distfreereg_test_29_update_lm.Rout.save' ... OK
  Running '1_distfreereg_test_30_group.R' [11s]
  Comparing '1_distfreereg_test_30_group.Rout' to '1_distfreereg_test_30_group.Rout.save' ... OK
  Running '1_distfreereg_test_31_formula_nls.R'
  Comparing '1_distfreereg_test_31_formula_nls.Rout' to '1_distfreereg_test_31_formula_nls.Rout.save' ... OK
  Running '1_distfreereg_test_32_coef_method.R'
  Comparing '1_distfreereg_test_32_coef_method.Rout' to '1_distfreereg_test_32_coef_method.Rout.save' ... OK
  Running '1_distfreereg_test_33_formula_method.R'
  Comparing '1_distfreereg_test_33_formula_method.Rout' to '1_distfreereg_test_33_formula_method.Rout.save' ... OK
  Running '1_distfreereg_test_34_formula_response_single_term.R'
  Comparing '1_distfreereg_test_34_formula_response_single_term.Rout' to '1_distfreereg_test_34_formula_response_single_term.Rout.save' ... OK
  Running '1_distfreereg_test_35_nls_diagonal_covariance.R'
  Comparing '1_distfreereg_test_35_nls_diagonal_covariance.Rout' to '1_distfreereg_test_35_nls_diagonal_covariance.Rout.save' ... OK
  Running '1_distfreereg_test_36_covariance_matrix_num_vec_comparison.R'
  Comparing '1_distfreereg_test_36_covariance_matrix_num_vec_comparison.Rout' to '1_distfreereg_test_36_covariance_matrix_num_vec_comparison.Rout.save' ... OK
  Running '1_distfreereg_test_37_covariance_forms.R'
  Comparing '1_distfreereg_test_37_covariance_forms.Rout' to '1_distfreereg_test_37_covariance_forms.Rout.save' ... OK
  Running '1_distfreereg_test_38_vcov.R'
  Comparing '1_distfreereg_test_38_vcov.Rout' to '1_distfreereg_test_38_vcov.Rout.save' ... OK
  Running '1_distfreereg_test_39_confint.R'
  Comparing '1_distfreereg_test_39_confint.Rout' to '1_distfreereg_test_39_confint.Rout.save' ... OK
  Running '1_distfreereg_test_40_uppercase_X.R'
  Comparing '1_distfreereg_test_40_uppercase_X.Rout' to '1_distfreereg_test_40_uppercase_X.Rout.save' ... OK
  Running '1_distfreereg_test_41_override_glm.R'
  Comparing '1_distfreereg_test_41_override_glm.Rout' to '1_distfreereg_test_41_override_glm.Rout.save' ... OK
  Running '1_distfreereg_test_42_update_glm.R'
  Comparing '1_distfreereg_test_42_update_glm.Rout' to '1_distfreereg_test_42_update_glm.Rout.save' ... OK
  Running '1_distfreereg_test_43_return_on_error.R'
  Comparing '1_distfreereg_test_43_return_on_error.Rout' to '1_distfreereg_test_43_return_on_error.Rout.save' ... OK
  Running '1_distfreereg_test_44_covariance_list.R'
  Comparing '1_distfreereg_test_44_covariance_list.Rout' to '1_distfreereg_test_44_covariance_list.Rout.save' ... OK
  Running '2_compare_test_02_func_H0_tests.R' [88s]
  Comparing '2_compare_test_02_func_H0_tests.Rout' to '2_compare_test_02_func_H0_tests.Rout.save' ... OK
  Running '2_compare_test_03_plot.R' [34s]
  Comparing '2_compare_test_03_plot.Rout' to '2_compare_test_03_plot.Rout.save' ... OK
  Running '2_compare_test_04_ks_test.R'
  Comparing '2_compare_test_04_ks_test.Rout' to '2_compare_test_04_ks_test.Rout.save' ... OK
  Running '2_compare_test_05_rejection.R'
  Comparing '2_compare_test_05_rejection.Rout' to '2_compare_test_05_rejection.Rout.save' ... OK
  Running '2_compare_test_06_update.R'
  Comparing '2_compare_test_06_update.Rout' to '2_compare_test_06_update.Rout.save' ... OK
  Running '2_compare_test_07_testf_no_X.R'
  Comparing '2_compare_test_07_testf_no_X.Rout' to '2_compare_test_07_testf_no_X.Rout.save' ... OK
  Running '2_compare_test_08_truef_no_X.R'
  Comparing '2_compare_test_08_truef_no_X.Rout' to '2_compare_test_08_truef_no_X.Rout.save' ... OK
  Running '2_compare_test_09_no_X.R'
  Comparing '2_compare_test_09_no_X.Rout' to '2_compare_test_09_no_X.Rout.save' ... OK
  Running '2_compare_test_10_covariances.R' [12s]
  Comparing '2_compare_test_10_covariances.Rout' to '2_compare_test_10_covariances.Rout.save' ... OK
  Running '2_compare_test_11_symmetric.R'
  Comparing '2_compare_test_11_symmetric.Rout' to '2_compare_test_11_symmetric.Rout.save' ... OK
  Running '2_compare_test_12_keep.R'
  Comparing '2_compare_test_12_keep.Rout' to '2_compare_test_12_keep.Rout.save' ... OK
  Running '2_compare_test_13_manual.R'
  Comparing '2_compare_test_13_manual.Rout' to '2_compare_test_13_manual.Rout.save' ... OK
  Running '2_compare_test_14_err_dist.R'
  Comparing '2_compare_test_14_err_dist.Rout' to '2_compare_test_14_err_dist.Rout.save' ... OK
  Running '2_compare_test_15_test_mean_formula_lm.R'
  Comparing '2_compare_test_15_test_mean_formula_lm.Rout' to '2_compare_test_15_test_mean_formula_lm.Rout.save' ... OK
  Running '2_compare_test_16_true_mean_formula_lm.R'
  Comparing '2_compare_test_16_true_mean_formula_lm.Rout' to '2_compare_test_16_true_mean_formula_lm.Rout.save' ... OK
  Running '2_compare_test_17_data_lengths.R'
  Comparing '2_compare_test_17_data_lengths.Rout' to '2_compare_test_17_data_lengths.Rout.save' ... OK
  Running '2_compare_test_18_global_override.R'
  Comparing '2_compare_test_18_global_override.Rout' to '2_compare_test_18_global_override.Rout.save' ... OK
  Running '2_compare_test_19_asymptotics.R' [15s]
  Comparing '2_compare_test_19_asymptotics.Rout' to '2_compare_test_19_asymptotics.Rout.save' ... OK
  Running '2_compare_test_20_quasi_glm.R'
  Comparing '2_compare_test_20_quasi_glm.Rout' to '2_compare_test_20_quasi_glm.Rout.save' ... OK
  Running '2_compare_test_21_return_on_error.R'
  Comparing '2_compare_test_21_return_on_error.Rout' to '2_compare_test_21_return_on_error.Rout.save' ... OK
  Running '2_compare_test_99_odd_situation.R'
  Comparing '2_compare_test_99_odd_situation.Rout' to '2_compare_test_99_odd_situation.Rout.save' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [11s] OK
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 NOTE