downloading reverse dependencies ...
downloading colorrepel_0.4.1.tar.gz ... ok
downloading GeomArchetypal_1.0.3.tar.gz ... ok
downloading manydist_0.4.3.tar.gz ... ok
downloading quickblock_0.2.2.tar.gz ... ok
downloading quickmatch_0.2.3.tar.gz ... ok
downloading scclust_0.2.5.tar.gz ... ok
downloading SpatialBSS_0.16-0.tar.gz ... ok
downloading StempCens_1.1.0.tar.gz ... ok

installing dependencies ‘archetypal’, ‘distances’, ‘scclust’,
  ‘SpatialNP’

also installing the dependency ‘inflection’

begin installing package ‘inflection’
begin installing package ‘SpatialNP’
begin installing package ‘distances’
* installing *source* package ‘inflection’ ...
** this is package ‘inflection’ version ‘1.3.6’
** package ‘inflection’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (inflection)
begin installing package ‘archetypal’
* installing *source* package ‘SpatialNP’ ...
** this is package ‘SpatialNP’ version ‘1.1-6’
** package ‘SpatialNP’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’
using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmzLSOL/R.INSTALL1a186a25c85ce7/SpatialNP/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c spatialnp.cpp -o spatialnp.o
spatialnp.cpp: In function ‘void center_step(double*, int*, double*, double*)’:
spatialnp.cpp:589:4: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  589 |    for(i=0;i<n;i++)
      |    ^~~
spatialnp.cpp:591:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  591 |     delete [] signs;
      |     ^~~~~~
spatialnp.cpp:592:4: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  592 |    for(i=0;i<n;i++)
      |    ^~~
spatialnp.cpp:594:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  594 |     delete [] vectors;
      |     ^~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o SpatialNP.so init.o spatialnp.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmzLSOL/R.INSTALL1a186a25c85ce7/SpatialNP/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-SpatialNP/00new/SpatialNP/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SpatialNP)
* installing *source* package ‘archetypal’ ...
** this is package ‘archetypal’ version ‘1.3.1’
** package ‘archetypal’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (archetypal)
* installing *source* package ‘distances’ ...
** this is package ‘distances’ version ‘0.1.12’
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’
using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6YuNQ0/R.INSTALL1a186e700b4b7c/distances/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c distances-init.c -o distances-init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c error.c -o error.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c get_dists.c -o get_dists.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c internal.c -o internal.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c max_dists.c -o max_dists.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c nn_search.c -o nn_search.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nn_search_ann.cpp -o nn_search_ann.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c utils.c -o utils.o
(cd libann && R_AR="ar" R_CXX="g++-14 -std=gnu++17" R_CPPFLAGS="-DNDEBUG -I/usr/local/include" R_CXXFLAGS="-fpic -g -O2 -Wall -pedantic -mtune=native " R_INCLUDE_DIR="/home/hornik/tmp/R-d-gcc-14/include" make) || exit 1;
make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmp6YuNQ0/R.INSTALL1a186e700b4b7c/distances/src/libann'
g++-14 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native  -Iinclude -I"/home/hornik/tmp/R-d-gcc-14/include" -c src/ANN.cpp -o src/ANN.o
g++-14 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native  -Iinclude -I"/home/hornik/tmp/R-d-gcc-14/include" -c src/brute.cpp -o src/brute.o
g++-14 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native  -Iinclude -I"/home/hornik/tmp/R-d-gcc-14/include" -c src/kd_tree.cpp -o src/kd_tree.o
g++-14 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native  -Iinclude -I"/home/hornik/tmp/R-d-gcc-14/include" -c src/kd_util.cpp -o src/kd_util.o
g++-14 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native  -Iinclude -I"/home/hornik/tmp/R-d-gcc-14/include" -c src/kd_split.cpp -o src/kd_split.o
g++-14 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native  -Iinclude -I"/home/hornik/tmp/R-d-gcc-14/include" -c src/kd_dump.cpp -o src/kd_dump.o
g++-14 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native  -Iinclude -I"/home/hornik/tmp/R-d-gcc-14/include" -c src/kd_search.cpp -o src/kd_search.o
g++-14 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native  -Iinclude -I"/home/hornik/tmp/R-d-gcc-14/include" -c src/kd_pr_search.cpp -o src/kd_pr_search.o
g++-14 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native  -Iinclude -I"/home/hornik/tmp/R-d-gcc-14/include" -c src/kd_fix_rad_search.cpp -o src/kd_fix_rad_search.o
g++-14 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native  -Iinclude -I"/home/hornik/tmp/R-d-gcc-14/include" -c src/bd_tree.cpp -o src/bd_tree.o
g++-14 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native  -Iinclude -I"/home/hornik/tmp/R-d-gcc-14/include" -c src/bd_search.cpp -o src/bd_search.o
g++-14 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native  -Iinclude -I"/home/hornik/tmp/R-d-gcc-14/include" -c src/bd_pr_search.cpp -o src/bd_pr_search.o
g++-14 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native  -Iinclude -I"/home/hornik/tmp/R-d-gcc-14/include" -c src/bd_fix_rad_search.cpp -o src/bd_fix_rad_search.o
g++-14 -std=gnu++17 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native  -Iinclude -I"/home/hornik/tmp/R-d-gcc-14/include" -c src/perf.cpp -o src/perf.o
ar -rcs libann.a src/ANN.o src/brute.o src/kd_tree.o src/kd_util.o src/kd_split.o src/kd_dump.o src/kd_search.o src/kd_pr_search.o src/kd_fix_rad_search.o src/bd_tree.o src/bd_search.o src/bd_pr_search.o src/bd_fix_rad_search.o src/perf.o
make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6YuNQ0/R.INSTALL1a186e700b4b7c/distances/src/libann'
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o distances.so distances-init.o error.o get_dists.o internal.o max_dists.o nn_search.o nn_search_ann.o utils.o libann/libann.a -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6YuNQ0/R.INSTALL1a186e700b4b7c/distances/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-distances/00new/distances/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (distances)
begin installing package ‘scclust’
* installing *source* package ‘scclust’ ...
** this is package ‘scclust’ version ‘0.2.5’
** package ‘scclust’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDTCNcn/R.INSTALL1a19be4d50377d/scclust/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ilibscclust/include  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c error.c -o error.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ilibscclust/include  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hierarchical.c -o hierarchical.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ilibscclust/include  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c internal.c -o internal.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ilibscclust/include  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c sc_clustering.c -o sc_clustering.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ilibscclust/include  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c scclust-init.c -o scclust-init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ilibscclust/include  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c utilities.c -o utilities.o
(cd libscclust && R_AR="ar" R_CC="gcc-14 -std=gnu23" R_CPPFLAGS="-DNDEBUG -I/usr/local/include" R_CFLAGS="-fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native " make) || exit 1;
make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpDTCNcn/R.INSTALL1a19be4d50377d/scclust/src/libscclust'
gcc-14 -std=gnu23 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c src/data_set.c -o src/data_set.o
gcc-14 -std=gnu23 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c src/digraph_core.c -o src/digraph_core.o
gcc-14 -std=gnu23 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c src/digraph_operations.c -o src/digraph_operations.o
gcc-14 -std=gnu23 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c src/dist_search_imp.c -o src/dist_search_imp.o
gcc-14 -std=gnu23 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c src/error.c -o src/error.o
gcc-14 -std=gnu23 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c src/hierarchical_clustering.c -o src/hierarchical_clustering.o
gcc-14 -std=gnu23 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c src/nng_batch_clustering.c -o src/nng_batch_clustering.o
gcc-14 -std=gnu23 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c src/nng_clustering.c -o src/nng_clustering.o
gcc-14 -std=gnu23 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c src/nng_core.c -o src/nng_core.o
gcc-14 -std=gnu23 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c src/nng_findseeds.c -o src/nng_findseeds.o
gcc-14 -std=gnu23 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c src/scclust_spi.c -o src/scclust_spi.o
gcc-14 -std=gnu23 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c src/scclust.c -o src/scclust.o
gcc-14 -std=gnu23 -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native   -c src/utilities.c -o src/utilities.o
ar -rcs libscclust.a src/data_set.o src/digraph_core.o src/digraph_operations.o src/dist_search_imp.o src/error.o src/hierarchical_clustering.o src/nng_batch_clustering.o src/nng_clustering.o src/nng_core.o src/nng_findseeds.o src/scclust_spi.o src/scclust.o src/utilities.o
make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpDTCNcn/R.INSTALL1a19be4d50377d/scclust/src/libscclust'
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o scclust.so error.o hierarchical.o internal.o sc_clustering.o scclust-init.o utilities.o libscclust/libscclust.a -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDTCNcn/R.INSTALL1a19be4d50377d/scclust/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-scclust/00new/scclust/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scclust)

checking distances_0.1.12.tar.gz ...
checking colorrepel_0.4.1.tar.gz ...
checking GeomArchetypal_1.0.3.tar.gz ...
checking manydist_0.4.3.tar.gz ...
checking quickblock_0.2.2.tar.gz ...
checking quickmatch_0.2.3.tar.gz ...
checking scclust_0.2.5.tar.gz ...
checking SpatialBSS_0.16-0.tar.gz ...
checking StempCens_1.1.0.tar.gz ...

Depends:
Package: distances
  Depends: R (>= 3.4.0)
  Imports: stats

Timings:
            user system elapsed
distances 25.349  3.775  29.931

Results:
Check status summary:
                  NOTE OK
  Source packages    0  1
  Reverse depends    1  7

Check results summary:
distances ... OK
rdepends_colorrepel ... OK
rdepends_GeomArchetypal ... OK
rdepends_manydist ... OK
rdepends_quickblock ... OK
rdepends_quickmatch ... OK
rdepends_scclust ... OK
rdepends_SpatialBSS ... OK
rdepends_StempCens ... NOTE
* checking C++ specification ... NOTE
* checking package subdirectories ... NOTE