* using log directory ‘/srv/hornik/tmp/CRAN_pretest/diathor.Rcheck’
* using R Under development (unstable) (2024-12-17 r87446)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘diathor/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘diathor’ version ‘0.1.5’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [6s/10s] NOTE
Maintainer: ‘Joaquin Cochero <jcochero@ilpla.edu.ar>’

New maintainer:
  Joaquin Cochero <jcochero@ilpla.edu.ar>
Old maintainer(s):
  Joaquín Cochero <jcochero@ilpla.edu.ar>

Possibly misspelled words in DESCRIPTION:
  Blanco (30:28)
  Béres (15:236)
  Chamorro (29:20)
  DDI (30:7)
  Dunlop (26:61)
  EDI (29:7)
  Kahlert (31:22)
  Kefford (26:71)
  Kovács (28:29)
  Lim (26:49)
  Mitrovic (26:39)
  PDISE (31:7)
  Sládeček (24:14)
  Warne (26:54)
  Álvarez (30:20)

Found the following (possibly) invalid URLs:
  URL: https://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.689.5469&rep=rep1&type=pdf#page=85
    From: man/pbidw.Rd
    Status: 401
    Message: Unauthorized
  URL: https://www.oieau.org/eaudoc/notice/ETUDE-DES-METHODES-BIOLOGIQUES-DAPPRECIATION-QUANTITATIVE-DE-LA-QUALITE-DES-EAUX
    From: man/ips.Rd
    Status: 404
    Message: Not Found

Found the following URLs which should use \doi (with the DOI name only):
  File ‘cemfgs_rb.Rd’:
    https://doi.org/10.1016/j.ecolind.2017.07.007
  File ‘diat_sampleData.Rd’:
    https://doi.org/10.1016/j.ecolind.2019.105951
  File ‘disp.Rd’:
    https://doi.org/10.1016/j.ecolind.2018.07.026
  File ‘spear.Rd’:
    https://doi.org/10.1016/j.ecolind.2018.12.035
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘diathor’ can be installed ... [9s/9s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘diathor-package.Rd’
* checking for left-over files ... NOTE
The following files look like leftovers:
  ‘diathor/diathor-package.Rd’
Please remove them from your package.
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [12s/12s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [4s/4s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 4 NOTEs