* using log directory ‘/srv/hornik/tmp/CRAN_pretest/diathor.Rcheck’ * using R Under development (unstable) (2024-09-13 r87147) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (9) Debian flang-new version 18.1.8 (9) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘diathor/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘diathor’ version ‘0.1.4’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [5s/10s] NOTE Maintainer: ‘Joaquin Cochero ’ New maintainer: Joaquin Cochero Old maintainer(s): Joaquín Cochero Possibly misspelled words in DESCRIPTION: href (16:69, 19:48, 21:39, 22:27) Found the following (possibly) invalid URLs: URL: , \url{https://www.bafu.admin.ch/bafu/fr/home/themes/eaux/publications/publications-eaux/methodes-analyse-appreciation-cours-eau-diatomees.html}) From: man/diathor-package.Rd Message: Invalid URI scheme URL: \url{https://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=PASCAL8060205402} From: man/diathor-package.Rd Message: Invalid URI scheme URL: \url{https://www.oieau.org/eaudoc/notice/ETUDE-DES-METHODES-BIOLOGIQUES-DAPPRECIATION-QUANTITATIVE-DE-LA-QUALITE-DES-EAUX} From: man/diathor-package.Rd Message: Invalid URI scheme URL: \url{https://www.vliz.be/imisdocs/publications/286641.pdf} From: man/diathor-package.Rd Message: Invalid URI scheme URL: https://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.689.5469&rep=rep1&type=pdf#page=85 From: man/pbidw.Rd Status: 401 Message: Unauthorized URL: https://www.oieau.org/eaudoc/notice/ETUDE-DES-METHODES-BIOLOGIQUES-DAPPRECIATION-QUANTITATIVE-DE-LA-QUALITE-DES-EAUX From: DESCRIPTION man/ips.Rd Status: 404 Message: Not Found URL: https://www.sciencedirect.com/science/article/abs/pii/S1470160X1730420X From: man/cemfgs_rb.Rd Status: 403 Message: Forbidden URL: https://www.sciencedirect.com/science/article/abs/pii/S1470160X18305478 From: man/disp.Rd Status: 403 Message: Forbidden URL: https://www.sciencedirect.com/science/article/abs/pii/S1470160X18309683 From: man/spear.Rd Status: 403 Message: Forbidden URL: https://www.sciencedirect.com/science/article/abs/pii/S1470160X1930946X From: man/diat_sampleData.Rd Status: 403 Message: Forbidden * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘diathor’ can be installed ... [8s/8s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file. Non-standard files/directories found at top level: ‘CRAN-RELEASE’ ‘README.MD’ ‘README.Rmd’ ‘diathor-package.Rd’ ‘sampleData.csv’ * checking for left-over files ... NOTE The following files look like leftovers: ‘diathor/diathor-package.Rd’ Please remove them from your package. * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... WARNING '::' or ':::' import not declared from: ‘diatbarcode’ * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [11s/11s] OK * checking Rd files ... [0s/0s] WARNING checkRd: (7) diathor-package.Rd:9: Invalid URL: \url{https://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=PASCAL8060205402} checkRd: (7) diathor-package.Rd:9: Invalid URL: , \url{https://www.bafu.admin.ch/bafu/fr/home/themes/eaux/publications/publications-eaux/methodes-analyse-appreciation-cours-eau-diatomees.html}) checkRd: (7) diathor-package.Rd:9: Invalid URL: \url{https://www.vliz.be/imisdocs/publications/286641.pdf} checkRd: (7) diathor-package.Rd:9: Invalid URL: \url{https://www.oieau.org/eaudoc/notice/ETUDE-DES-METHODES-BIOLOGIQUES-DAPPRECIATION-QUANTITATIVE-DE-LA-QUALITE-DES-EAUX} * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [1s/1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [4s/4s] OK * checking PDF version of manual ... [4s/4s] WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: ! LaTeX Error: Unicode character  (U+008D) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. * checking PDF version of manual without index ... ERROR * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... NOTE Found the following files/directories: ‘diathor-manual.tex’ * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 3 WARNINGs, 5 NOTEs