* using log directory 'd:/RCompile/CRANincoming/R-devel/diagFDR.Rcheck'
* using R Under development (unstable) (2026-03-12 r89611 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-03-13 17:15:25 UTC
* checking for file 'diagFDR/DESCRIPTION' ... OK
* this is package 'diagFDR' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Quentin Giai Gianetto <quentin.giaigianetto@pasteur.fr>'

New submission

Possibly misspelled words in DESCRIPTION:
  Proteomics (2:39)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'diagFDR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) dfdr_pi0_storey.Rd:30: Lost braces; missing escapes or markup?
    30 | Estimates pi0(lambda) = #{p > lambda} / ((1-lambda)*m) across a grid of lambdas.
       |                          ^
checkRd: (-1) dfdr_plot_fdrhat_pi0.Rd:48: Lost braces; missing escapes or markup?
    48 | where R(t) = #{p <= t}, m = total number of tested hypotheses (after filtering).
       |               ^
checkRd: (-1) dfdr_plot_fdrhat_pi0.Rd:31: Lost braces; missing escapes or markup?
    31 | \item{r_min}{Numeric value, uses to compute R(t) := #{p <= t} + r_min to avoid division by zero at tiny t.}
       |                                                      ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [45s] OK
* checking PDF version of manual ... [13s] OK
* checking HTML version of manual ... [11s] OK
* DONE
Status: 2 NOTEs