* installing *source* package ‘dexter’ ... ** this is package ‘dexter’ version ‘1.6.0’ ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c RcppExports.cpp -o RcppExports.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c ability.cpp -o ability.o In file included from ability.cpp:4: shared.h:26: warning: ignoring ‘#pragma omp declare’ [-Wunknown-pragmas] 26 | #pragma omp declare reduction( + : arma::mat : omp_out += omp_in ) \ shared.h:29: warning: ignoring ‘#pragma omp declare’ [-Wunknown-pragmas] 29 | #pragma omp declare reduction( + : arma::vec : omp_out += omp_in ) \ ability.cpp:95: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 95 | #pragma omp parallel num_threads(n_cores) ability.cpp:98: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 98 | #pragma omp for ability.cpp:193: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 193 | #pragma omp parallel num_threads(n_cores) ability.cpp:201: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 201 | #pragma omp for ability.cpp:291: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 291 | #pragma omp parallel num_threads(n_cores) ability.cpp:300: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 300 | #pragma omp for ability.cpp:364: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 364 | #pragma omp parallel num_threads(n_cores) ability.cpp:373: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 373 | #pragma omp for g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c binning.cpp -o binning.o In file included from binning.cpp:4: shared.h:26: warning: ignoring ‘#pragma omp declare’ [-Wunknown-pragmas] 26 | #pragma omp declare reduction( + : arma::mat : omp_out += omp_in ) \ shared.h:29: warning: ignoring ‘#pragma omp declare’ [-Wunknown-pragmas] 29 | #pragma omp declare reduction( + : arma::vec : omp_out += omp_in ) \ g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c data.cpp -o data.o data.cpp:64: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 64 | #pragma omp parallel for data.cpp:881: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 881 | #pragma omp parallel for num_threads(ncores) data.cpp:916: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 916 | #pragma omp parallel for num_threads(ncores) g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c elsym.cpp -o elsym.o In file included from elsym.cpp:3: shared.h:26: warning: ignoring ‘#pragma omp declare’ [-Wunknown-pragmas] 26 | #pragma omp declare reduction( + : arma::mat : omp_out += omp_in ) \ shared.h:29: warning: ignoring ‘#pragma omp declare’ [-Wunknown-pragmas] 29 | #pragma omp declare reduction( + : arma::vec : omp_out += omp_in ) \ elsym.cpp:332: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 332 | #pragma omp parallel elsym.cpp:338: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 338 | #pragma omp for g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c elsymBinom.cpp -o elsymBinom.o g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c enrm.cpp -o enrm.o In file included from enrm.cpp:5: shared.h:26: warning: ignoring ‘#pragma omp declare’ [-Wunknown-pragmas] 26 | #pragma omp declare reduction( + : arma::mat : omp_out += omp_in ) \ shared.h:29: warning: ignoring ‘#pragma omp declare’ [-Wunknown-pragmas] 29 | #pragma omp declare reduction( + : arma::vec : omp_out += omp_in ) \ enrm.cpp:151: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 151 | #pragma omp parallel num_threads(max_cores) enrm.cpp:164: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 164 | #pragma omp for reduction(+: E,H) enrm.cpp:251: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 251 | #pragma omp parallel num_threads(max_cores) enrm.cpp:264: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 264 | #pragma omp for reduction(+: E,H) g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c enrmBayes.cpp -o enrmBayes.o enrmBayes.cpp:77: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 77 | #pragma omp parallel num_threads(max_cores) enrmBayes.cpp:96: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 96 | #pragma omp for g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c priors.cpp -o priors.o In file included from priors.cpp:5: shared.h:26: warning: ignoring ‘#pragma omp declare’ [-Wunknown-pragmas] 26 | #pragma omp declare reduction( + : arma::mat : omp_out += omp_in ) \ shared.h:29: warning: ignoring ‘#pragma omp declare’ [-Wunknown-pragmas] 29 | #pragma omp declare reduction( + : arma::vec : omp_out += omp_in ) \ g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c pv.cpp -o pv.o In file included from pv.cpp:8: shared.h:26: warning: ignoring ‘#pragma omp declare’ [-Wunknown-pragmas] 26 | #pragma omp declare reduction( + : arma::mat : omp_out += omp_in ) \ shared.h:29: warning: ignoring ‘#pragma omp declare’ [-Wunknown-pragmas] 29 | #pragma omp declare reduction( + : arma::vec : omp_out += omp_in ) \ pv.cpp:59: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 59 | #pragma omp parallel num_threads(max_cores) pv.cpp:78: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 78 | #pragma omp for pv.cpp:221: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 221 | #pragma omp parallel num_threads(max_cores) pv.cpp:240: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 240 | #pragma omp for pv.cpp:371: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 371 | #pragma omp parallel num_threads(max_cores) pv.cpp:377: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 377 | #pragma omp for pv.cpp:417: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 417 | #pragma omp parallel num_threads(max_cores) pv.cpp:431: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 431 | #pragma omp for pv.cpp: In function ‘Rcpp::List pv_chain_normal(const arma::mat&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::mat&, const arma::vec&, int, arma::ivec, int, int, int)’: pv.cpp:173:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 173 | if(bcol >= bmat.n_cols) bcol = chain; | ~~~~~^~~~~~~~~~~~~~ pv.cpp: In function ‘Rcpp::List pv_chain_mix(const arma::mat&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::ivec&, const arma::mat&, const arma::mat&, const arma::vec&, int, arma::ivec, int, int, int)’: pv.cpp:346:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 346 | if(bcol >= bmat.n_cols) bcol = chain; | ~~~~~^~~~~~~~~~~~~~ g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c shared.cpp -o shared.o In file included from shared.cpp:2: shared.h:26: warning: ignoring ‘#pragma omp declare’ [-Wunknown-pragmas] 26 | #pragma omp declare reduction( + : arma::mat : omp_out += omp_in ) \ shared.h:29: warning: ignoring ‘#pragma omp declare’ [-Wunknown-pragmas] 29 | #pragma omp declare reduction( + : arma::vec : omp_out += omp_in ) \ g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/Rcpp/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/RcppArmadillo/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/dqrng/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/BH/include' -I'/home/hornik/tmp/CRAN_special_gcc-san/Library/sitmo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-stringop-truncation -c simulation.cpp -o simulation.o In file included from simulation.cpp:2: shared.h:26: warning: ignoring ‘#pragma omp declare’ [-Wunknown-pragmas] 26 | #pragma omp declare reduction( + : arma::mat : omp_out += omp_in ) \ shared.h:29: warning: ignoring ‘#pragma omp declare’ [-Wunknown-pragmas] 29 | #pragma omp declare reduction( + : arma::vec : omp_out += omp_in ) \ g++-14 -fsanitize=address,undefined,bounds-strict -fno-omit-frame-pointer -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-xtra/lib -Wl,-O1 -o dexter.so RcppExports.o ability.o binning.o data.o elsym.o elsymBinom.o enrm.o enrmBayes.o priors.o pv.o shared.o simulation.o -llapack -L/home/hornik/tmp/R-d-gcc-xtra/lib -lRblas -lasan -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-xtra/lib -lR installing to /home/hornik/tmp/CRAN_special_gcc-san/dexter.Rcheck/00LOCK-dexter/00new/dexter/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dexter)