* using log directory ‘/srv/hornik/tmp/CRAN/dexter.Rcheck’
* using R Under development (unstable) (2023-12-14 r85685)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.5 (1)
    Debian flang-new version 17.0.5 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘dexter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘dexter’ version ‘1.3.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/5s] Note_to_CRAN_maintainers
Maintainer: ‘Jesse Koops <jesse.koops@cito.nl>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘dexter’ can be installed ... [55s/55s] OK
* used C++ compiler: ‘Debian clang version 17.0.5 (1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
anti_join:
  function(x, y, by, copy, ...)
anti_join.dx_resp_data:
  function(respData, y, by, .recompute_sumscores)

filter:
  function(.data, ..., .by, .preserve)
filter.dx_resp_data:
  function(respData, predicate, env, .recompute_sumscores)

semi_join:
  function(x, y, by, copy, ...)
semi_join.dx_resp_data:
  function(respData, y, by, .recompute_sumscores)
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s/13s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [75s/5s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
plausible_values       11.871  0.417   0.467
individual_differences  7.145  0.308   0.373
profile_plot            6.979  0.241   0.259
information             6.367  0.196   0.487
DIF                     5.376  0.254   0.405
standards_3dc           5.253  0.158   0.255
fit_inter               4.929  0.183   0.177
Examples with CPU time > 2.5 times elapsed time
                         user system elapsed  ratio
fit_inter               4.929  0.183   0.177 28.881
profile_plot            6.979  0.241   0.259 27.876
plausible_values       11.871  0.417   0.467 26.313
standards_3dc           5.253  0.158   0.255 21.220
individual_differences  7.145  0.308   0.373 19.981
ability                 4.293  0.176   0.239 18.699
DIF                     5.376  0.254   0.405 13.901
information             6.367  0.196   0.487 13.476
fit_domains             1.549  0.063   0.139 11.597
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [184s/14s] NOTE
  Running ‘testthat.R’ [183s/14s]
Running R code in ‘testthat.R’ had CPU time 13.5 times elapsed time
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [145s/31s] NOTE
Re-building vignettes had CPU time 4.7 times elapsed time
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 4 NOTEs