downloading reverse dependencies ‘corncob’, ‘metadeconfoundR’, ‘plotor’, ‘brglm2’ trying URL 'file:///data/Repositories/CRAN/src/contrib/corncob_0.4.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/metadeconfoundR_1.0.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/plotor_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/brglm2_1.0.1.tar.gz' installing dependencies ‘detectseparation’, ‘gtExtras’, ‘mbrglm’, ‘medicaldata’, ‘NHANES’, ‘R4HCR’, ‘ROI.plugin.alabama’, ‘ROI.plugin.ecos’, ‘ROI.plugin.lpsolve’, ‘ROI.plugin.neos’ also installing the dependencies ‘ECOSolveR’, ‘xmlrpc2’, ‘mada’ begin installing package ‘ECOSolveR’ begin installing package ‘xmlrpc2’ begin installing package ‘mada’ begin installing package ‘ROI.plugin.lpsolve’ begin installing package ‘ROI.plugin.alabama’ begin installing package ‘medicaldata’ begin installing package ‘gtExtras’ begin installing package ‘NHANES’ begin installing package ‘mbrglm’ * installing *source* package ‘medicaldata’ ... ** this is package ‘medicaldata’ version ‘0.2.0’ ** package ‘medicaldata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (medicaldata) * installing *source* package ‘ROI.plugin.alabama’ ... ** this is package ‘ROI.plugin.alabama’ version ‘1.0-2’ ** package ‘ROI.plugin.alabama’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROI.plugin.alabama) * installing *source* package ‘xmlrpc2’ ... ** this is package ‘xmlrpc2’ version ‘1.2’ ** package ‘xmlrpc2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xmlrpc2) begin installing package ‘ROI.plugin.neos’ * installing *source* package ‘mbrglm’ ... ** this is package ‘mbrglm’ version ‘0.0.1’ ** package ‘mbrglm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjvjK7a/R.INSTALL233b1769f4e07d/mbrglm/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mod.c -o mod.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o mbrglm.so mod.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjvjK7a/R.INSTALL233b1769f4e07d/mbrglm/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mbrglm/00new/mbrglm/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mbrglm) * installing *source* package ‘NHANES’ ... ** this is package ‘NHANES’ version ‘2.1.0’ ** package ‘NHANES’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NHANES) * installing *source* package ‘ROI.plugin.lpsolve’ ... ** this is package ‘ROI.plugin.lpsolve’ version ‘1.0-2’ ** package ‘ROI.plugin.lpsolve’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROI.plugin.lpsolve) begin installing package ‘detectseparation’ * installing *source* package ‘detectseparation’ ... ** this is package ‘detectseparation’ version ‘0.4.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (detectseparation) * installing *source* package ‘ROI.plugin.neos’ ... ** this is package ‘ROI.plugin.neos’ version ‘1.0-2’ ** package ‘ROI.plugin.neos’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROI.plugin.neos) * installing *source* package ‘mada’ ... ** this is package ‘mada’ version ‘0.5.12’ ** package ‘mada’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mada) begin installing package ‘R4HCR’ * installing *source* package ‘gtExtras’ ... ** this is package ‘gtExtras’ version ‘0.6.2’ ** package ‘gtExtras’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gtExtras) * installing *source* package ‘R4HCR’ ... ** this is package ‘R4HCR’ version ‘0.1’ ** package ‘R4HCR’ successfully unpacked and MD5 sums checked ** using staged installation ** data *** moving datasets to lazyload DB ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R4HCR) * installing *source* package ‘ECOSolveR’ ... ** this is package ‘ECOSolveR’ version ‘0.6.1’ ** package ‘ECOSolveR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAZfkyL/R.INSTALL233b0c244d2173/ECOSolveR/src' (cd ecos && \ make libecos.a CC="gcc-15" CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config" AR="ar" RANLIB="ranlib" && \ make libecos_bb.a CC="gcc-15" CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config" AR="ar" RANLIB="ranlib") && \ touch ecos.ts make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpAZfkyL/R.INSTALL233b0c244d2173/ECOSolveR/src/ecos' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -c src/ecos.c -o ecos.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -c src/kkt.c -o kkt.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -c src/cone.c -o cone.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -c src/spla.c -o spla.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -c src/ctrlc.c -o ctrlc.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -c src/timer.c -o timer.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -c src/preproc.c -o preproc.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -c src/splamm.c -o splamm.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -c src/equil.c -o equil.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -c src/expcone.c -o expcone.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -c src/wright_omega.c -o wright_omega.o ( cd external/ldl ; make ) make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpAZfkyL/R.INSTALL233b0c244d2173/ECOSolveR/src/ecos/external/ldl' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -I../SuiteSparse_config -Iinclude -c src/ldl.c -o ldl.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -I../SuiteSparse_config -Iinclude -DLDL_LONG -c src/ldl.c -o ldll.o ar rcs libldl.a ldl.o ldll.o ranlib libldl.a make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpAZfkyL/R.INSTALL233b0c244d2173/ECOSolveR/src/ecos/external/ldl' ar -x external/ldl/libldl.a ( cd external/amd ; make ) make[3]: Entering directory '/home/hornik/tmp/scratch/RtmpAZfkyL/R.INSTALL233b0c244d2173/ECOSolveR/src/ecos/external/amd' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -c src/amd_global.c -o amd_global.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_aat.c -o amd_i_aat.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_1.c -o amd_i_1.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_2.c -o amd_i_2.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_dump.c -o amd_i_dump.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_postorder.c -o amd_i_postorder.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_post_tree.c -o amd_i_post_tree.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_defaults.c -o amd_i_defaults.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_order.c -o amd_i_order.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_control.c -o amd_i_control.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_info.c -o amd_i_info.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_valid.c -o amd_i_valid.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDINT -c src/amd_preprocess.c -o amd_i_preprocess.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_aat.c -o amd_l_aat.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_1.c -o amd_l_1.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_2.c -o amd_l_2.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_dump.c -o amd_l_dump.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_postorder.c -o amd_l_postorder.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_post_tree.c -o amd_l_post_tree.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_defaults.c -o amd_l_defaults.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_order.c -o amd_l_order.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_control.c -o amd_l_control.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_info.c -o amd_l_info.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_valid.c -o amd_l_valid.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -I../SuiteSparse_config -DDLONG -c src/amd_preprocess.c -o amd_l_preprocess.o ar rcs libamd.a amd_global.o amd_i_aat.o amd_i_1.o amd_i_2.o amd_i_dump.o amd_i_postorder.o amd_i_post_tree.o amd_i_defaults.o amd_i_order.o amd_i_control.o amd_i_info.o amd_i_valid.o amd_i_preprocess.o amd_l_aat.o amd_l_1.o amd_l_2.o amd_l_dump.o amd_l_postorder.o amd_l_post_tree.o amd_l_defaults.o amd_l_order.o amd_l_control.o amd_l_info.o amd_l_valid.o amd_l_preprocess.o ranlib libamd.a make[3]: Leaving directory '/home/hornik/tmp/scratch/RtmpAZfkyL/R.INSTALL233b0c244d2173/ECOSolveR/src/ecos/external/amd' ar -x external/amd/libamd.a ar rcs libecos.a ecos.o kkt.o cone.o spla.o ctrlc.o timer.o preproc.o splamm.o equil.o expcone.o wright_omega.o ldll.o amd_l*.o amd_global.o ranlib libecos.a make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpAZfkyL/R.INSTALL233b0c244d2173/ECOSolveR/src/ecos' make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpAZfkyL/R.INSTALL233b0c244d2173/ECOSolveR/src/ecos' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -c ecos_bb/ecos_bb_preproc.c -o ecos_bb_preproc.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -c ecos_bb/ecos_bb.c -o ecos_bb.o ar rcs libecos_bb.a ecos.o kkt.o cone.o spla.o ctrlc.o timer.o preproc.o splamm.o equil.o expcone.o wright_omega.o ecos_bb_preproc.o ecos_bb.o ldll.o amd_l_1.o amd_l_2.o amd_l_aat.o amd_l_control.o amd_l_defaults.o amd_l_dump.o amd_l_info.o amd_l_order.o amd_l_post_tree.o amd_l_postorder.o amd_l_preprocess.o amd_l_valid.o amd_global.o ranlib libecos_bb.a make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpAZfkyL/R.INSTALL233b0c244d2173/ECOSolveR/src/ecos' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ecosolve.c -o ecosolve.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DCTRLC=1 -DLDL_LONG -DDLONG -DNPRINT -I/home/hornik/tmp/R-d-gcc-15/include -Iinclude -Iexternal/ldl/include -Iexternal/amd/include -Iexternal/SuiteSparse_config -I../SuiteSparse_config -Iecos/include -Iecos/external/SuiteSparse_config -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ecosolver_init.c -o ecosolver_init.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o ECOSolveR.so ecosolve.o ecosolver_init.o -Lecos -lecos -lecos_bb -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAZfkyL/R.INSTALL233b0c244d2173/ECOSolveR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ECOSolveR/00new/ECOSolveR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ECOSolveR) begin installing package ‘ROI.plugin.ecos’ * installing *source* package ‘ROI.plugin.ecos’ ... ** this is package ‘ROI.plugin.ecos’ version ‘1.0-2’ ** package ‘ROI.plugin.ecos’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROI.plugin.ecos) checking detectseparation_0.4.0.tar.gz ... checking corncob_0.4.2.tar.gz ... checking metadeconfoundR_1.0.5.tar.gz ... checking plotor_1.0.0.tar.gz ... checking brglm2_1.0.1.tar.gz ... Depends: Package: detectseparation Depends: R (>= 3.3.0) Imports: ROI, ROI.plugin.lpsolve, lpSolveAPI, pkgload Timings: user system elapsed detectseparation 36.747 4.51 44.707 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 0 4 Check results summary: detectseparation ... NOTE * checking CRAN incoming feasibility ... [5s/8s] NOTE rdepends_brglm2 ... OK rdepends_corncob ... OK rdepends_metadeconfoundR ... OK rdepends_plotor ... OK