downloading reverse dependencies ... downloading hmmr_1.0-0.1.tar.gz ... ok downloading ldhmm_0.6.1.tar.gz ... ok downloading plotHMM_2023.8.28.tar.gz ... ok downloading segclust2d_0.3.3.tar.gz ... ok installing dependencies ‘depmixS4’, ‘gnorm’, ‘move’, ‘moveHMM’, ‘neuroblastoma’, ‘Rdonlp2’ Warning: package ‘Rdonlp2’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages begin installing package ‘depmixS4’ begin installing package ‘gnorm’ begin installing package ‘neuroblastoma’ begin installing package ‘moveHMM’ begin installing package ‘move’ * installing *source* package ‘neuroblastoma’ ... ** this is package ‘neuroblastoma’ version ‘2023.9.3’ ** package ‘neuroblastoma’ successfully unpacked and MD5 sums checked ** using staged installation ** data ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (neuroblastoma) * installing *source* package ‘gnorm’ ... ** this is package ‘gnorm’ version ‘1.0.0’ ** package ‘gnorm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gnorm) * installing *source* package ‘depmixS4’ ... ** this is package ‘depmixS4’ version ‘1.5-1’ ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprCDfVm/R.INSTALL30c8c43434fad6/depmixS4/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c depmixS4_init.c -o depmixS4_init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fb.c -o fb.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o depmixS4.so depmixS4_init.o fb.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprCDfVm/R.INSTALL30c8c43434fad6/depmixS4/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-depmixS4/00new/depmixS4/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for ‘confint’ with signature ‘"mix"’: no definition for class “mix” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (depmixS4) * installing *source* package ‘moveHMM’ ... ** this is package ‘moveHMM’ version ‘1.10’ ** package ‘moveHMM’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTSzfXr/R.INSTALL30c8c210643b17/moveHMM/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c moveHMM_init.c -o moveHMM_init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nLogLike.cpp -o nLogLike.o nLogLike.cpp: In function ‘double nLogLike_rcpp(int, arma::mat, arma::mat, Rcpp::DataFrame, std::string, std::string, arma::mat, arma::mat, arma::rowvec, Rcpp::IntegerVector, bool, bool, Rcpp::IntegerVector)’: nLogLike.cpp:187:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 187 | for(int i=0 ; i= 4.0.0), nnet, MASS, Rsolnp, nlme Imports: stats, stats4, methods Timings: user system elapsed depmixS4 56.902 4.84 62.588 Results: Check status summary: OK Source packages 1 Reverse depends 4 Check results summary: depmixS4 ... OK rdepends_hmmr ... OK rdepends_ldhmm ... OK rdepends_plotHMM ... OK rdepends_segclust2d ... OK Check results changes: Package: hmmr Check: CRAN incoming feasibility Old result: NOTE