* using log directory ‘/srv/hornik/tmp/CRAN_pretest/dentomedical.Rcheck’ * using R Under development (unstable) (2025-11-28 r89073) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 21.1.5 (1) Debian flang version 21.1.5 (1) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * checking for file ‘dentomedical/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘dentomedical’ version ‘0.1.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Umar Hussain ’ New submission * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘dentomedical’ can be installed ... [3s/3s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... NOTE License components which are templates and need '+ file LICENSE': MIT * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... NOTE Mismatches for apparent methods not registered: sum: function(..., na.rm) sum.stat: function(data, by, statistic) sum: function(..., na.rm) sum.stat.p: function(data, by, statistic, test_type) See section ‘Registering S3 methods’ in the ‘Writing R Extensions’ manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s/5s] NOTE linreg : summary_numeric: no visible global function definition for ‘sd’ linreg: no visible global function definition for ‘lm’ linreg: no visible global function definition for ‘as.formula’ linreg: no visible binding for global variable ‘term’ linreg: no visible binding for global variable ‘Predictor’ linreg: no visible binding for global variable ‘Level’ linreg: no visible binding for global variable ‘Characteristics’ linreg: no visible binding for global variable ‘Univariate beta (95% CI)’ linreg: no visible binding for global variable ‘Univariate p’ linreg: no visible binding for global variable ‘Multivariate beta (95% CI)’ linreg: no visible binding for global variable ‘Multivariate p’ logreg : get_logistic: no visible binding for global variable ‘binomial’ logreg : add_reference: no visible binding for global variable ‘term’ logreg : : no visible global function definition for ‘as.formula’ logreg : : no visible binding for global variable ‘term’ logreg: no visible binding for global variable ‘estimate’ logreg: no visible binding for global variable ‘conf.low’ logreg: no visible binding for global variable ‘conf.high’ logreg: no visible binding for global variable ‘p.value’ logreg: no visible binding for global variable ‘term’ logreg: no visible binding for global variable ‘Univariate OR (95% CI)’ logreg: no visible binding for global variable ‘P-value (Univariate)’ logreg: no visible global function definition for ‘as.formula’ logreg: no visible binding for global variable ‘Multivariate OR (95% CI)’ logreg: no visible binding for global variable ‘P-value (Multivariate)’ medical_data: no visible global function definition for ‘data’ norm.sum: no visible global function definition for ‘shapiro.test’ sum.stat: no visible binding for global variable ‘pct’ sum.stat: no visible binding for global variable ‘Variable’ sum.stat: no visible binding for global variable ‘Characteristic’ sum.stat: no visible binding for global variable ‘Value’ sum.stat.p: no visible global function definition for ‘fisher.test’ sum.stat.p: no visible global function definition for ‘chisq.test’ sum.stat.p: no visible global function definition for ‘wilcox.test’ sum.stat.p: no visible global function definition for ‘t.test’ sum.stat.p: no visible global function definition for ‘kruskal.test’ sum.stat.p: no visible global function definition for ‘aov’ sum.stat.p: no visible binding for global variable ‘pct’ sum.stat.p: no visible binding for global variable ‘Variable’ sum.stat.p: no visible binding for global variable ‘Characteristic’ sum.stat.p: no visible binding for global variable ‘label’ sum.stat.p: no visible binding for global variable ‘val’ Undefined global functions or variables: Characteristic Characteristics Level Multivariate OR (95% CI) Multivariate beta (95% CI) Multivariate p P-value (Multivariate) P-value (Univariate) Predictor Univariate OR (95% CI) Univariate beta (95% CI) Univariate p Value Variable aov as.formula binomial chisq.test conf.high conf.low data estimate fisher.test kruskal.test label lm p.value pct sd shapiro.test t.test term val wilcox.test Consider adding importFrom("base", "beta") importFrom("stats", "aov", "as.formula", "binomial", "chisq.test", "fisher.test", "kruskal.test", "lm", "sd", "shapiro.test", "t.test", "wilcox.test") importFrom("utils", "data") to your NAMESPACE file. Found the following calls to data() loading into the global environment: File ‘dentomedical/R/dataset.R’: data("infert", package = "datasets") See section ‘Good practice’ in ‘?data’. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... NOTE Rd file 'diag_accuracy.Rd': \examples lines wider than 100 characters: goldstandard = c("positive","positive","negative","negative","positive","negative","positive","negative") These lines will be truncated in the PDF manual. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [3s/3s] OK * checking PDF version of manual ... [4s/4s] WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: ! LaTeX Error: Unicode character β (U+03B2) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. * checking PDF version of manual without index ... ERROR * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... NOTE Found the following files/directories: ‘dentomedical-manual.tex’ * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 WARNING, 6 NOTEs