Warning: package ‘graphics’ in options("defaultPackages") was not found Warning: package ‘stats’ in options("defaultPackages") was not found * installing *source* package ‘denim’ ... ** using staged installation ** libs using C++ compiler: ‘Debian clang version 18.1.5 (2)’ using C++17 clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c Compartment.cpp -o Compartment.o In file included from Compartment.cpp:1: In file included from ./Compartment.h:10: In file included from ./muParser.h:36: In file included from ./muParserBase.h:42: In file included from ./muParserDef.h:36: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ In file included from Compartment.cpp:1: In file included from ./Compartment.h:10: In file included from ./muParser.h:36: In file included from ./muParserBase.h:44: ./muParserBytecode.h:53:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 53 | struct // SValData | ^ ./muParserBytecode.h:60:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 60 | struct // SFunData | ^ ./muParserBytecode.h:71:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 71 | struct // SOprtData | ^ 4 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c Distribution.cpp -o Distribution.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c DistributionConstant.cpp -o DistributionConstant.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c DistributionDiscreteExponential.cpp -o DistributionDiscreteExponential.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c DistributionDiscreteGamma.cpp -o DistributionDiscreteGamma.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c DistributionDiscreteWeibull.cpp -o DistributionDiscreteWeibull.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c DistributionLogNormal.cpp -o DistributionLogNormal.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c DistributionMathExpression.cpp -o DistributionMathExpression.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c DistributionNonparametric.cpp -o DistributionNonparametric.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c DistributionParametric.cpp -o DistributionParametric.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c DistributionTransitionProb.cpp -o DistributionTransitionProb.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c Model.cpp -o Model.o In file included from Model.cpp:1: In file included from ./Model.h:7: In file included from ./Compartment.h:10: In file included from ./muParser.h:36: In file included from ./muParserBase.h:42: In file included from ./muParserDef.h:36: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ In file included from Model.cpp:1: In file included from ./Model.h:7: In file included from ./Compartment.h:10: In file included from ./muParser.h:36: In file included from ./muParserBase.h:44: ./muParserBytecode.h:53:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 53 | struct // SValData | ^ ./muParserBytecode.h:60:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 60 | struct // SFunData | ^ ./muParserBytecode.h:71:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 71 | struct // SOprtData | ^ 4 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c ModelJSON.cpp -o ModelJSON.o In file included from ModelJSON.cpp:5: In file included from ./ModelJSON.h:12: In file included from ./Compartment.h:10: In file included from ./muParser.h:36: In file included from ./muParserBase.h:42: In file included from ./muParserDef.h:36: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ In file included from ModelJSON.cpp:5: In file included from ./ModelJSON.h:12: In file included from ./Compartment.h:10: In file included from ./muParser.h:36: In file included from ./muParserBase.h:44: ./muParserBytecode.h:53:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 53 | struct // SValData | ^ ./muParserBytecode.h:60:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 60 | struct // SFunData | ^ ./muParserBytecode.h:71:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 71 | struct // SOprtData | ^ 4 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c glue.cpp -o glue.o In file included from glue.cpp:1: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ In file included from glue.cpp:2: In file included from ./simcm.h:7: In file included from ./Compartment.h:10: In file included from ./muParser.h:36: In file included from ./muParserBase.h:44: ./muParserBytecode.h:53:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 53 | struct // SValData | ^ ./muParserBytecode.h:60:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 60 | struct // SFunData | ^ ./muParserBytecode.h:71:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 71 | struct // SOprtData | ^ 4 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c helpers.cpp -o helpers.o In file included from helpers.cpp:1: In file included from ./helpers.h:14: In file included from ./Model.h:7: In file included from ./Compartment.h:10: In file included from ./muParser.h:36: In file included from ./muParserBase.h:42: In file included from ./muParserDef.h:36: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ In file included from helpers.cpp:1: In file included from ./helpers.h:14: In file included from ./Model.h:7: In file included from ./Compartment.h:10: In file included from ./muParser.h:36: In file included from ./muParserBase.h:44: ./muParserBytecode.h:53:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 53 | struct // SValData | ^ ./muParserBytecode.h:60:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 60 | struct // SFunData | ^ ./muParserBytecode.h:71:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 71 | struct // SOprtData | ^ 4 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c muParser.cpp -o muParser.o In file included from muParser.cpp:29: In file included from ./muParser.h:36: In file included from ./muParserBase.h:42: In file included from ./muParserDef.h:36: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ In file included from muParser.cpp:29: In file included from ./muParser.h:36: In file included from ./muParserBase.h:44: ./muParserBytecode.h:53:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 53 | struct // SValData | ^ ./muParserBytecode.h:60:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 60 | struct // SFunData | ^ ./muParserBytecode.h:71:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 71 | struct // SOprtData | ^ 4 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c muParserBase.cpp -o muParserBase.o In file included from muParserBase.cpp:29: In file included from ./muParserBase.h:42: In file included from ./muParserDef.h:36: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ In file included from muParserBase.cpp:29: In file included from ./muParserBase.h:44: ./muParserBytecode.h:53:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 53 | struct // SValData | ^ ./muParserBytecode.h:60:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 60 | struct // SFunData | ^ ./muParserBytecode.h:71:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 71 | struct // SOprtData | ^ 4 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c muParserBytecode.cpp -o muParserBytecode.o In file included from muParserBytecode.cpp:29: In file included from ./muParserBytecode.h:36: In file included from ./muParserDef.h:36: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ In file included from muParserBytecode.cpp:29: ./muParserBytecode.h:53:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 53 | struct // SValData | ^ ./muParserBytecode.h:60:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 60 | struct // SFunData | ^ ./muParserBytecode.h:71:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 71 | struct // SOprtData | ^ 4 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c muParserCallback.cpp -o muParserCallback.o In file included from muParserCallback.cpp:29: In file included from ./muParserCallback.h:33: In file included from ./muParserDef.h:36: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c muParserError.cpp -o muParserError.o In file included from muParserError.cpp:29: In file included from ./muParserError.h:38: In file included from ./muParserDef.h:36: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c muParserTokenReader.cpp -o muParserTokenReader.o In file included from muParserTokenReader.cpp:35: In file included from ./muParserTokenReader.h:40: In file included from ./muParserDef.h:36: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ In file included from muParserTokenReader.cpp:36: In file included from ./muParserBase.h:44: ./muParserBytecode.h:53:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 53 | struct // SValData | ^ ./muParserBytecode.h:60:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 60 | struct // SFunData | ^ ./muParserBytecode.h:71:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 71 | struct // SOprtData | ^ muParserTokenReader.cpp:273:42: warning: invalid UTF-8 in comment [-Winvalid-utf8] 273 | // 14-31 are control characters. I dont want to have to deal with such strings at all! | ^ 5 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c myProb.cpp -o myProb.o In file included from myProb.cpp:3: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c simcm.cpp -o simcm.o In file included from simcm.cpp:1: In file included from ./simcm.h:7: In file included from ./Compartment.h:10: In file included from ./muParser.h:36: In file included from ./muParserBase.h:42: In file included from ./muParserDef.h:36: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ In file included from simcm.cpp:1: In file included from ./simcm.h:7: In file included from ./Compartment.h:10: In file included from ./muParser.h:36: In file included from ./muParserBase.h:44: ./muParserBytecode.h:53:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 53 | struct // SValData | ^ ./muParserBytecode.h:60:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 60 | struct // SFunData | ^ ./muParserBytecode.h:71:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 71 | struct // SOprtData | ^ 4 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c test-denim.cpp -o test-denim.o In file included from test-denim.cpp:16: In file included from ./ModelJSON.h:12: In file included from ./Compartment.h:10: In file included from ./muParser.h:36: In file included from ./muParserBase.h:42: In file included from ./muParserDef.h:36: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined] 26 | #define R_NO_REMAP | ^ :4:9: note: previous definition is here 4 | #define R_NO_REMAP 1 | ^ In file included from test-denim.cpp:16: In file included from ./ModelJSON.h:12: In file included from ./Compartment.h:10: In file included from ./muParser.h:36: In file included from ./muParserBase.h:44: ./muParserBytecode.h:53:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 53 | struct // SValData | ^ ./muParserBytecode.h:60:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 60 | struct // SFunData | ^ ./muParserBytecode.h:71:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] 71 | struct // SOprtData | ^ 4 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c test-runner.cpp -o test-runner.o clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o denim.so Compartment.o Distribution.o DistributionConstant.o DistributionDiscreteExponential.o DistributionDiscreteGamma.o DistributionDiscreteWeibull.o DistributionLogNormal.o DistributionMathExpression.o DistributionNonparametric.o DistributionParametric.o DistributionTransitionProb.o Model.o ModelJSON.o RcppExports.o glue.o helpers.o muParser.o muParserBase.o muParserBytecode.o muParserCallback.o muParserError.o muParserTokenReader.o myProb.o simcm.o test-denim.o test-runner.o -L/home/hornik/tmp/R-d-clang-18/lib -lR During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found installing to /srv/hornik/tmp/CRAN/denim.Rcheck/00LOCK-denim/00new/denim/libs ** R ** inst ** byte-compile and prepare package for lazy loading During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found ** help *** installing help indices *** copying figures ** building package indices During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found ** installing vignettes ** testing if installed package can be loaded from temporary location During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found ** testing if installed package keeps a record of temporary installation path * DONE (denim)