* using log directory ‘/srv/hornik/tmp/CRAN/denim.Rcheck’ * using R Under development (unstable) (2024-05-28 r86639) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.4 (1) Debian flang-new version 18.1.4 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘denim/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘denim’ version ‘1.0.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Thinh Ong ’ New submission Possibly misspelled words in DESCRIPTION: Markovian (17:108) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘denim’ can be installed ... [67s/67s] WARNING Found the following significant warnings: Warning: package ‘graphics’ in options("defaultPackages") was not found Warning: package ‘stats’ in options("defaultPackages") was not found ./muParserBytecode.h:53:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] ./muParserBytecode.h:60:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] ./muParserBytecode.h:71:4: warning: anonymous types declared in an anonymous union are an extension [-Wnested-anon-types] muParserTokenReader.cpp:273:42: warning: invalid UTF-8 in comment [-Winvalid-utf8] See ‘/srv/hornik/tmp/CRAN/denim.Rcheck/00install.out’ for details. * used C++ compiler: ‘Debian clang version 18.1.5 (2)’ * checking C++ specification ... OK Not all R platforms support C++17 * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE Non-standard file/directory found at top level: ‘LICENSE.md’ * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... WARNING During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. * checking replacement functions ... WARNING During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found The argument of a replacement function which corresponds to the right hand side must be named ‘value’. * checking foreign function calls ... NOTE During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found See chapter ‘System and foreign language interfaces’ in the ‘Writing R Extensions’ manual. * checking R code for possible problems ... [2s/2s] NOTE During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/srv/hornik/tmp/R-d-clang-18/library/graphics/libs/graphics.so': /srv/hornik/tmp/R-d-clang-18/library/graphics/libs/graphics.so: undefined symbol: LENGTH_EX Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load Execution halted During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found See section ‘Good practice’ in ‘?attach’. During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found See section ‘Good practice’ in ‘?data’. During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found * checking Rd files ... [0s/0s] WARNING During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... WARNING During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found * checking Rd \usage sections ... WARNING During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found The \usage entries for S3 methods should use the \method markup and not their full name. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [0s/0s] ERROR Running examples in ‘denim-Ex.R’ failed The error occurred in: R Under development (unstable) (2024-05-28 r86639) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. During startup - Warning messages: 1: package ‘graphics’ in options("defaultPackages") was not found 2: package ‘stats’ in options("defaultPackages") was not found > pkgname <- "denim" > source(file.path(R.home("share"), "R", "examples-header.R")) Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/srv/hornik/tmp/R-d-clang-18/library/graphics/libs/graphics.so': /srv/hornik/tmp/R-d-clang-18/library/graphics/libs/graphics.so: undefined symbol: LENGTH_EX Calls: source ... assign -> loadNamespace -> library.dynam -> dyn.load Execution halted