R Under development (unstable) (2025-04-29 r88182 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(demulticoder)
> 
> test_check("demulticoder")
cutadapt is not installed, skipping tests.
cutadapt is not installed, skipping tests.
cutadapt is not installed, skipping tests.
cutadapt is not installed, skipping tests.
Existing files found in the output directory. Overwriting existing files.
Rows: 2 Columns: 25
-- Column specification --------------------------------------------------------
Delimiter: ","
chr  (3): primer_name, forward, reverse
dbl (18): minCutadaptlength, maxN, maxEE_forward, maxEE_reverse, truncLen_fo...
lgl  (4): already_trimmed, count_all_samples, multithread, verbose

i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Rows: 2 Columns: 25
-- Column specification --------------------------------------------------------
Delimiter: ","
chr  (3): primer_name, forward, reverse
dbl (18): minCutadaptlength, maxN, maxEE_forward, maxEE_reverse, truncLen_fo...
lgl  (4): already_trimmed, count_all_samples, multithread, verbose

i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Rows: 4 Columns: 3
-- Column specification --------------------------------------------------------
Delimiter: ","
chr (3): sample_name, primer_name, organism

i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.
Creating output directory: D:/temp/2025_05_01_00_05_16_5604/RtmpaMqHOl/demulticoder_run/prefiltered_sequences
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
> 
> proc.time()
   user  system elapsed 
  12.78    1.85   14.42