R Under development (unstable) (2024-01-07 r85787 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> library(demic)
> 
> test_check("demic")
[1] "samples_pipeline results:"
    sample  est_ptr coefficient       pValue       cor correctY
1 Akk0_001 1.946931   0.3840328 7.840437e-25 0.9970041 3.260867
2 Akk1_001 2.763177   0.5858478 1.476701e-26 0.9979485 3.321042
3 Akk2_001 3.449088   0.7136534 5.229909e-31 0.9992274 3.361187
[1] "contigs_pipeline results:"
    sample  est_ptr coefficient       pValue       cor correctY
1 Akk0_001 1.715696   0.4011170 7.288541e-17 0.9969854 3.322873
2 Akk1_001 2.226228   0.5768216 2.693837e-14 0.9953022 3.408493
3 Akk2_001 2.701039   0.7113067 2.338425e-17 0.9983580 3.460695
    sample  est_ptr coefficient       pValue       cor correctY
1 Akk0_001 1.715696   0.4011170 7.288541e-17 0.9969854 3.322873
2 Akk1_001 2.226228   0.5768216 2.693837e-14 0.9953022 3.408493
3 Akk2_001 2.701039   0.7113067 2.338425e-17 0.9983580 3.460695
[1] "samples_pipeline results:"
      sample  est_ptr coefficient       pValue       cor correctY
1 Bfrag0_002 2.061760   0.3699599 1.470163e-36 0.9918912 2.216383
2 Bfrag1_002 3.043483   0.5690839 3.576654e-49 0.9981767 2.222179
3 Bfrag2_002 4.204818   0.7343522 1.049070e-51 0.9986483 2.208119
[1] "contigs_pipeline results:"
      sample  est_ptr coefficient       pValue       cor correctY
1 Bfrag0_002 2.016307   0.3664890 4.542776e-29 0.9925141 2.169409
2 Bfrag1_002 2.959016   0.5671724 9.967804e-38 0.9982152 2.136281
3 Bfrag2_002 4.099103   0.7375531 4.154507e-41 0.9988040 2.110920
      sample  est_ptr coefficient       pValue       cor correctY
1 Bfrag0_002 2.016307   0.3664890 4.542776e-29 0.9925141 2.169409
2 Bfrag1_002 2.959016   0.5671724 9.967804e-38 0.9982152 2.136281
3 Bfrag2_002 4.099103   0.7375531 4.154507e-41 0.9988040 2.110920
[1] "samples_pipeline results:"
      sample  est_ptr coefficient       pValue       cor correctY
1 Ecoli0_003 1.998594   0.3728261 5.377361e-48 0.9846956 2.300529
2 Ecoli1_003 2.869151   0.5675039 3.895207e-62 0.9947622 2.253054
3 Ecoli2_003 3.909774   0.7341253 4.441206e-67 0.9963963 2.140867
[1] "contigs_pipeline results:"
      sample  est_ptr coefficient       pValue       cor correctY
1 Ecoli0_003 1.990049   0.3706305 1.017798e-38 0.9858292 2.325948
2 Ecoli1_003 2.853738   0.5647964 5.066894e-49 0.9941844 2.278539
3 Ecoli2_003 3.931128   0.7372970 1.651148e-53 0.9961849 2.190109
      sample  est_ptr coefficient       pValue       cor correctY
1 Ecoli0_003 1.990049   0.3706305 1.017798e-38 0.9858292 2.325948
2 Ecoli1_003 2.853738   0.5647964 5.066894e-49 0.9941844 2.278539
3 Ecoli2_003 3.931128   0.7372970 1.651148e-53 0.9961849 2.190109
[1] "samples_pipeline results:"
   sample  est_ptr coefficient       pValue        cor correctY
1 Sample1 1.577167  -0.3978371 8.111920e-37 -0.7637339 1.481230
2 Sample2 2.354320  -0.7476431 1.453821e-88 -0.9410749 1.588319
3 Sample3 1.838580  -0.5317476 1.621567e-46 -0.8202775 1.417947
[1] "contigs_pipeline results:"
   sample  est_ptr coefficient       pValue       cor correctY
1 Sample1 1.588210   0.4092856 2.615677e-29 0.7674678 1.489151
2 Sample2 2.296994   0.7358040 2.051570e-66 0.9354331 1.590525
3 Sample3 1.840564   0.5393121 2.435692e-35 0.8196654 1.425356
   sample  est_ptr coefficient       pValue       cor correctY
1 Sample1 1.588210   0.4092856 2.615677e-29 0.7674678 1.489151
2 Sample2 2.296994   0.7358040 2.051570e-66 0.9354331 1.590525
3 Sample3 1.840564   0.5393121 2.435692e-35 0.8196654 1.425356
[1] "samples_pipeline results:"
   sample  est_ptr coefficient       pValue        cor  correctY
1 Sample1 2.281308  -0.6319368 5.251404e-62 -0.9775760 0.3235725
2 Sample2 1.748664  -0.4282018 4.980528e-39 -0.9244302 0.3799434
3 Sample3 2.323527  -0.6459869 1.588855e-64 -0.9803428 0.3075130
[1] "contigs_pipeline results:"
   sample  est_ptr coefficient       pValue       cor  correctY
1 Sample1 2.213034   0.6262499 2.574158e-48 0.9766598 0.3099378
2 Sample2 1.752228   0.4426046 1.283021e-31 0.9282515 0.3779174
3 Sample3 2.254366   0.6416850 6.401727e-52 0.9806849 0.3044411
   sample  est_ptr coefficient       pValue       cor  correctY
1 Sample1 2.213034   0.6262499 2.574158e-48 0.9766598 0.3099378
2 Sample2 1.752228   0.4426046 1.283021e-31 0.9282515 0.3779174
3 Sample3 2.254366   0.6416850 6.401727e-52 0.9806849 0.3044411
structure(list(`(Intercept)` = c(0.122133753095513, 0.112468233560288, 
0.0372788404325122, 0.177304339887256, 0.0270507610681736, 0.0842232868459067, 
0.106812647682803, 0.162034499737329, 0.14194349045613, 0.138951868657145
), GC_content = c(-0.139377848208212, -0.139377848208212, -0.139377848208212, 
-0.139377848208212, -0.139377848208212, -0.139377848208212, -0.139377848208212, 
-0.139377848208212, -0.139377848208212, -0.139377848208212), 
    s_c = c("a:1", "a:2", "b:3", "b:4", "c:5", "c:6", "d:7", 
    "d:8", "e:9", "e:10")), row.names = c("a:1", "a:2", "b:3", 
"b:4", "c:5", "c:6", "d:7", "d:8", "e:9", "e:10"), class = "data.frame")
[ FAIL 0 | WARN 6 | SKIP 0 | PASS 39 ]

[ FAIL 0 | WARN 6 | SKIP 0 | PASS 39 ]
> 
> proc.time()
   user  system elapsed 
  13.68    1.09   14.78